Wall clock time and date at job start Tue Mar 31 2020 14:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48505 * 109.46994 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47023 * 299.99590 * 3 2 1 6 6 H 1.48498 * 109.47558 * 60.00085 * 3 2 1 7 7 C 1.39961 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99885 * 167.84789 * 7 2 1 9 9 C 1.41046 * 120.00304 * 347.85682 * 7 2 1 10 10 C 1.40741 * 120.30448 * 331.96553 * 9 7 2 11 11 C 1.36453 * 119.94979 * 180.02562 * 10 9 7 12 12 C 1.38882 * 120.58258 * 359.72191 * 11 10 9 13 13 C 1.38199 * 120.62133 * 0.56077 * 12 11 10 14 14 C 1.38691 * 120.02917 * 359.44315 * 13 12 11 15 15 N 1.39002 * 120.28593 * 180.29610 * 14 13 12 16 16 C 1.34775 * 120.00171 * 331.44399 * 15 14 13 17 17 O 1.21609 * 119.99929 * 4.46531 * 16 15 14 18 18 C 1.47454 * 120.00062 * 184.46360 * 16 15 14 19 19 C 1.40184 * 119.94868 * 359.73159 * 18 16 15 20 20 C 1.36199 * 120.48761 * 179.69770 * 19 18 16 21 21 C 1.40028 * 120.09246 * 0.58699 * 20 19 18 22 22 N 1.35549 * 133.26808 * 179.66801 * 21 20 19 23 23 C 1.30925 * 109.71412 * 180.02562 * 22 21 20 24 24 O 1.35207 * 125.01023 * 179.97438 * 23 22 21 25 25 N 1.36251 * 109.97502 * 0.02562 * 23 22 21 26 26 H 0.96996 * 126.39897 * 179.97438 * 25 23 22 27 27 C 1.38569 * 107.20160 * 359.97438 * 25 23 22 28 28 C 1.38208 * 133.88965 * 179.97438 * 27 25 23 29 29 H 0.97003 * 119.99808 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.02228 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.70790 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.68555 * 180.29632 * 12 11 10 33 33 H 1.07995 * 119.98447 * 179.71824 * 13 12 11 34 34 H 0.97000 * 119.99925 * 151.43837 * 15 14 13 35 35 H 1.07996 * 119.75413 * 359.97438 * 19 18 16 36 36 H 1.08006 * 119.95191 * 180.27280 * 20 19 18 37 37 H 0.96699 * 113.99526 * 90.02665 * 24 23 22 38 38 H 1.07995 * 120.21091 * 0.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7026 1.3462 -0.0006 5 1 1.8839 2.3963 -1.2126 6 1 1.8839 2.3964 1.2125 7 6 2.0082 -1.2121 0.0005 8 1 3.0701 -1.2228 -0.1964 9 6 1.3266 -2.4198 0.2580 10 6 0.1691 -2.4253 1.0585 11 6 -0.4843 -3.5979 1.3034 12 6 -0.0209 -4.7910 0.7642 13 6 1.1165 -4.8140 -0.0203 14 6 1.8007 -3.6371 -0.2857 15 7 2.9418 -3.6533 -1.0792 16 6 3.7154 -4.7559 -1.1247 17 8 3.3729 -5.7637 -0.5366 18 6 4.9771 -4.7404 -1.8877 19 6 5.3682 -3.5799 -2.5699 20 6 6.5344 -3.5514 -3.2729 21 6 7.3481 -4.6896 -3.3294 22 7 8.5295 -4.9578 -3.9373 23 6 8.8866 -6.1916 -3.6839 24 8 10.0150 -6.7816 -4.1385 25 7 7.9527 -6.7938 -2.8953 26 1 7.9791 -7.7057 -2.5659 27 6 6.9583 -5.8600 -2.6519 28 6 5.7771 -5.8830 -1.9347 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2013 -1.5021 1.4794 31 1 -1.3720 -3.5977 1.9186 32 1 -0.5521 -5.7100 0.9635 33 1 1.4703 -5.7483 -0.4306 34 1 3.1813 -2.8709 -1.6002 35 1 4.7423 -2.7005 -2.5341 36 1 6.8294 -2.6512 -3.7917 37 1 10.7760 -6.6803 -3.5505 38 1 5.4750 -6.7796 -1.4139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521669708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:14 Heat of formation + Delta-G solvation = 29.151232 kcal Electronic energy + Delta-G solvation = -25441.971036 eV Core-core repulsion = 21636.483360 eV Total energy + Delta-G solvation = -3805.487676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.39495 -39.84982 -38.34830 -37.30874 -36.24264 -33.91290 -33.68236 -33.45696 -30.23329 -29.87732 -29.55861 -27.97518 -25.31400 -23.90185 -22.96448 -21.99212 -21.54885 -20.80455 -19.71552 -19.29445 -18.05701 -17.54332 -17.31849 -16.82267 -16.10336 -15.71450 -15.24572 -14.75909 -14.52892 -14.31647 -14.22769 -14.07022 -13.84410 -13.26759 -13.02261 -12.69311 -12.41402 -12.19215 -11.84816 -11.68800 -11.61694 -11.36194 -11.18837 -11.04848 -10.92403 -10.50290 -10.27993 -10.18489 -9.74778 -9.34826 -9.29408 -8.81952 -8.65455 -8.30528 -7.39978 -7.00768 -6.70006 -4.43090 0.44305 1.25354 1.97673 2.26066 2.67689 2.89487 3.03725 3.07365 3.18938 3.35040 3.42086 3.81826 3.86701 4.02002 4.27726 4.60541 4.79129 4.96336 5.06011 5.14778 5.20242 5.42475 5.64134 5.86933 6.04500 6.20814 6.27447 6.34408 6.38554 6.51767 6.55863 6.60206 6.90524 7.02947 7.14887 7.23692 7.26717 7.45181 7.62155 7.69995 7.94151 8.08830 8.09666 8.38788 8.53059 8.77744 8.79407 8.98402 10.13461 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.003251 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.040027 B = 8611.598005 C =10287.805119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.468 4.468 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.147 4.147 11 C -0.115 4.115 12 C -0.224 4.224 13 C -0.094 4.094 14 C 0.013 3.987 15 N -0.623 5.623 16 C 0.540 3.460 17 O -0.538 6.538 18 C -0.101 4.101 19 C -0.091 4.091 20 C -0.070 4.070 21 C 0.076 3.924 22 N -0.487 5.487 23 C 0.453 3.547 24 O -0.443 6.443 25 N -0.597 5.597 26 H 0.425 0.575 27 C 0.045 3.955 28 C -0.046 4.046 29 H 0.280 0.720 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.404 0.596 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.411 0.589 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.387 -6.906 -5.136 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.498 4.498 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.167 4.167 11 C -0.134 4.134 12 C -0.244 4.244 13 C -0.114 4.114 14 C -0.081 4.081 15 N -0.265 5.265 16 C 0.328 3.672 17 O -0.418 6.418 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.090 4.090 21 C -0.044 4.044 22 N -0.219 5.219 23 C 0.149 3.851 24 O -0.245 6.245 25 N -0.222 5.222 26 H 0.264 0.736 27 C -0.064 4.064 28 C -0.068 4.068 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.241 0.759 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.269 0.731 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.186 -7.002 -5.770 16.840 hybrid contribution 0.500 0.153 0.708 0.880 sum 14.686 -6.850 -5.062 16.977 Atomic orbital electron populations 1.69811 1.07450 1.29101 1.35673 1.25863 0.94786 1.01170 0.92296 0.86262 0.80843 0.81013 0.78645 1.18382 1.19936 1.19759 1.19361 0.96011 0.90571 1.43845 0.90530 1.17408 0.92841 0.90610 0.89369 1.20933 0.98019 0.96928 1.00814 1.20501 0.98925 0.93516 1.00420 1.20352 1.00025 0.96595 1.07444 1.20900 0.94319 0.96964 0.99220 1.17758 0.91714 0.95544 1.03097 1.42765 1.23716 1.15699 1.44272 1.17991 0.83350 0.84180 0.81702 1.90693 1.72754 1.32310 1.46087 1.19784 0.96061 0.94142 1.00648 1.20923 0.96341 0.97738 0.96225 1.19917 0.92859 0.96372 0.99823 1.18948 0.92987 0.94271 0.98165 1.70613 1.14303 1.11071 1.25882 1.20344 0.86894 0.86454 0.91422 1.84813 1.17357 1.74762 1.47546 1.43367 1.19743 1.14993 1.44056 0.73593 1.18457 0.93312 0.90335 1.04255 1.19962 0.90261 0.99144 0.97445 0.90862 0.85970 0.89393 0.89196 0.86191 0.75859 0.84215 0.84380 0.73090 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.46 10.87 55.55 0.60 -18.86 16 2 C 0.08 1.79 5.23 -17.33 -0.09 1.70 16 3 Si 0.91 17.53 29.58 -169.99 -5.03 12.50 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.47 -11.37 8.35 -37.87 -0.32 -11.68 16 8 H 0.08 1.74 7.28 -52.48 -0.38 1.36 16 9 C 0.10 2.57 5.57 -106.65 -0.59 1.98 16 10 C -0.15 -3.72 8.61 -39.28 -0.34 -4.06 16 11 C -0.11 -2.69 9.97 -39.99 -0.40 -3.09 16 12 C -0.22 -5.19 10.04 -39.36 -0.39 -5.58 16 13 C -0.09 -2.25 8.75 -39.43 -0.34 -2.59 16 14 C 0.01 0.30 6.44 -83.20 -0.54 -0.23 16 15 N -0.62 -12.52 4.97 -10.44 -0.05 -12.57 16 16 C 0.54 10.24 7.63 -12.51 -0.10 10.14 16 17 O -0.54 -11.66 13.38 5.27 0.07 -11.59 16 18 C -0.10 -1.53 5.88 -104.92 -0.62 -2.15 16 19 C -0.09 -1.19 9.46 -39.58 -0.37 -1.57 16 20 C -0.07 -0.87 10.03 -39.64 -0.40 -1.27 16 21 C 0.08 1.01 7.22 -84.61 -0.61 0.40 16 22 N -0.49 -6.41 11.29 -12.18 -0.14 -6.55 16 23 C 0.45 4.64 9.39 -88.91 -0.83 3.80 16 24 O -0.44 -3.09 13.62 -17.32 -0.24 -3.33 16 25 N -0.60 -5.54 6.27 -11.93 -0.07 -5.61 16 26 H 0.42 2.50 8.96 -40.82 -0.37 2.13 16 27 C 0.04 0.55 7.28 -83.88 -0.61 -0.06 16 28 C -0.05 -0.63 9.61 -39.10 -0.38 -1.00 16 29 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 30 H 0.12 3.16 6.21 -52.48 -0.33 2.84 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.12 2.83 5.72 -52.49 -0.30 2.53 16 34 H 0.40 7.22 5.73 -40.82 -0.23 6.99 16 35 H 0.14 1.63 6.37 -52.49 -0.33 1.29 16 36 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.41 0.57 9.06 45.56 0.41 0.99 16 38 H 0.14 1.81 7.64 -52.49 -0.40 1.41 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -32.05 330.17 -9.14 -41.19 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -2.33 Total: 15.10 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -6.93 Total: -15.26 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.34 Total: -43.60 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.17 Total: -14.91 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.05 -9.14 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521669708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.345 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds