Wall clock time and date at job start Tue Mar 31 2020 14:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33524 * 125.97347 * 2 1 4 4 N 1.31912 * 114.57003 * 179.97438 * 3 2 1 5 5 C 1.29681 * 116.92065 * 0.02562 * 4 3 2 6 6 N 1.38754 * 124.94035 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99874 * 359.97438 * 6 5 4 8 8 O 1.21381 * 120.00177 * 359.97438 * 7 6 5 9 9 C 1.49306 * 119.99609 * 179.97438 * 7 6 5 10 10 O 1.21364 * 120.00540 * 353.04219 * 9 7 6 11 11 N 1.34785 * 119.99733 * 173.04005 * 9 7 6 12 12 C 1.46921 * 120.62810 * 1.62516 * 11 9 7 13 13 C 1.52768 * 109.00583 * 233.58217 * 12 11 9 14 14 C 1.53040 * 109.38123 * 305.58658 * 13 12 11 15 15 C 1.50695 * 109.44951 * 181.25150 * 14 13 12 16 16 H 1.07996 * 120.00612 * 239.93987 * 15 14 13 17 17 C 1.37884 * 119.99841 * 59.94087 * 15 14 13 18 18 N 1.31514 * 119.99712 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47056 * 60.00190 * 19 17 15 21 21 H 1.48500 * 109.47071 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47259 * 300.00256 * 19 17 15 23 23 C 1.53037 * 109.53646 * 61.24158 * 14 13 12 24 24 C 1.46925 * 120.62945 * 181.90243 * 11 9 7 25 25 S 1.70964 * 110.11573 * 359.97438 * 5 4 3 26 26 H 1.09000 * 109.47205 * 89.99680 * 1 2 3 27 27 H 1.08999 * 109.47357 * 209.99465 * 1 2 3 28 28 H 1.08998 * 109.47282 * 329.99993 * 1 2 3 29 29 H 1.08004 * 122.71576 * 359.70982 * 3 2 1 30 30 H 0.97000 * 119.99831 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.59006 * 353.41414 * 12 11 9 32 32 H 1.08995 * 109.58723 * 113.84601 * 12 11 9 33 33 H 1.09003 * 109.56254 * 185.55301 * 13 12 11 34 34 H 1.09000 * 109.35946 * 65.50049 * 13 12 11 35 35 H 1.08999 * 109.46246 * 301.22492 * 14 13 12 36 36 H 0.97005 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.50291 * 178.67903 * 23 14 13 38 38 H 1.09003 * 109.52682 * 58.59974 * 23 14 13 39 39 H 1.09005 * 109.58544 * 246.16154 * 24 11 9 40 40 H 1.09003 * 109.58645 * 6.43498 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0806 0.0000 4 7 3.5844 0.8198 0.0005 5 6 3.9313 -0.4298 0.0005 6 7 5.2399 -0.8912 0.0015 7 6 6.2636 -0.0145 0.0021 8 8 6.0408 1.1787 0.0013 9 6 7.6716 -0.5110 0.0038 10 8 7.8969 -1.6967 0.1319 11 7 8.6926 0.3575 -0.1370 12 6 8.4376 1.7994 -0.2575 13 6 9.1271 2.3232 -1.5160 14 6 10.6103 1.9481 -1.4760 15 6 11.2983 2.4905 -2.7021 16 1 11.7877 1.8165 -3.3895 17 6 11.3030 3.8476 -2.9463 18 7 10.7066 4.6683 -2.1095 19 14 12.1565 4.5202 -4.4657 20 1 11.5330 3.9390 -5.6818 21 1 12.0183 5.9984 -4.4975 22 1 13.5960 4.1578 -4.4262 23 6 10.7521 0.4246 -1.4439 24 6 10.0814 -0.1202 -0.1790 25 16 2.5418 -1.4258 0.0004 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3634 0.8900 0.5138 29 1 1.8988 2.0868 -0.0046 30 1 5.4179 -1.8447 0.0017 31 1 7.3644 1.9759 -0.3302 32 1 8.8365 2.3153 0.6159 33 1 9.0272 3.4076 -1.5625 34 1 8.6624 1.8766 -2.3951 35 1 11.0688 2.3743 -0.5837 36 1 10.7103 5.6231 -2.2812 37 1 11.8090 0.1576 -1.4391 38 1 10.2725 -0.0046 -2.3237 39 1 10.6171 0.2359 0.7010 40 1 10.0926 -1.2100 -0.1973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547756443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:35 Heat of formation + Delta-G solvation = 4.081298 kcal Electronic energy + Delta-G solvation = -24789.036126 eV Core-core repulsion = 21117.905288 eV Total energy + Delta-G solvation = -3671.130839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16574 -39.82955 -38.42690 -37.13461 -35.41591 -33.48050 -32.33549 -31.26142 -30.10810 -27.64256 -26.47729 -25.26998 -23.96498 -22.52927 -22.41919 -21.07549 -19.71687 -19.31452 -18.30485 -17.12023 -16.85007 -16.50951 -16.16518 -16.02604 -15.22348 -15.01336 -14.71117 -14.54077 -14.08843 -13.91741 -13.35745 -13.21411 -13.15242 -13.02357 -12.93558 -12.74940 -12.35980 -11.82052 -11.50840 -11.44394 -11.04011 -10.94384 -10.87722 -10.63053 -10.38386 -10.12163 -9.94084 -9.66050 -9.48423 -9.24604 -9.18982 -8.56817 -8.43889 -8.33083 -8.14726 -6.00329 -4.07073 0.39289 0.64676 1.35668 1.52738 2.28842 2.70487 3.30505 3.31352 3.36287 3.38502 3.40709 4.20042 4.42488 4.52857 4.68845 4.84449 5.16768 5.29160 5.42889 5.48870 5.56706 5.63216 5.80797 5.88772 5.98410 6.04134 6.20490 6.41990 6.50069 6.58031 6.62389 6.78397 6.98097 7.13527 7.24589 7.52280 7.62252 7.73595 7.81728 7.94143 8.02858 8.13010 8.41692 8.95821 9.57769 11.05096 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.002920 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.786721 B = 9586.893553 C =10604.423763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.245 4.245 3 C 0.067 3.933 4 N -0.472 5.472 5 C 0.269 3.731 6 N -0.613 5.613 7 C 0.506 3.494 8 O -0.429 6.429 9 C 0.506 3.494 10 O -0.543 6.543 11 N -0.553 5.553 12 C 0.043 3.957 13 C -0.121 4.121 14 C 0.046 3.954 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.107 3.893 25 S 0.126 5.874 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.180 0.820 30 H 0.433 0.567 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 -11.584 6.150 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.367 4.367 3 C -0.084 4.084 4 N -0.193 5.193 5 C -0.100 4.100 6 N -0.266 5.266 7 C 0.286 3.714 8 O -0.296 6.296 9 C 0.286 3.714 10 O -0.423 6.423 11 N -0.284 5.284 12 C -0.077 4.077 13 C -0.159 4.159 14 C 0.027 3.973 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.015 4.015 25 S 0.377 5.623 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.197 0.803 30 H 0.272 0.728 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.304 -11.768 6.245 22.639 hybrid contribution 0.449 0.919 -0.893 1.357 sum -17.855 -10.849 5.352 21.568 Atomic orbital electron populations 1.20168 0.86512 1.03306 1.02876 1.25768 1.01420 0.93798 1.15697 1.21618 0.85875 1.00229 1.00689 1.66562 1.17722 1.15809 1.19162 1.23557 0.90593 0.92370 1.03453 1.42783 1.00735 1.11859 1.71273 1.20836 0.86613 0.86440 0.77468 1.90524 1.83039 1.14377 1.41681 1.19456 0.85308 0.86378 0.80225 1.90718 1.84686 1.15556 1.51319 1.48271 1.05832 1.09059 1.65240 1.23469 1.06845 0.76470 1.00876 1.21915 0.97098 1.04032 0.92845 1.18685 0.92606 0.88416 0.97578 1.21137 1.34213 0.91927 1.07973 0.92774 1.24967 0.95399 0.97105 0.96497 1.69833 1.43408 1.03264 1.36315 0.86673 0.80097 0.77768 0.83538 1.20363 1.21296 1.20325 1.22024 0.99067 1.00216 0.94781 1.21949 0.79593 0.99794 1.00140 1.83905 0.96359 1.10010 1.72035 0.90668 0.91262 0.90126 0.80318 0.72765 0.84488 0.91834 0.87542 0.94545 0.95397 0.92869 0.91713 0.92825 0.91257 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.41 36.00 0.37 0.00 16 2 C -0.24 -2.17 6.59 -35.96 -0.24 -2.41 16 3 C 0.07 0.75 11.24 -19.17 -0.22 0.53 16 4 N -0.47 -6.93 8.64 -15.17 -0.13 -7.06 16 5 C 0.27 3.46 8.01 -87.54 -0.70 2.76 16 6 N -0.61 -7.98 5.39 -13.55 -0.07 -8.05 16 7 C 0.51 8.21 7.76 -11.65 -0.09 8.12 16 8 O -0.43 -7.98 11.65 5.47 0.06 -7.91 16 9 C 0.51 8.74 7.76 -11.65 -0.09 8.65 16 10 O -0.54 -9.57 15.91 5.48 0.09 -9.49 16 11 N -0.55 -10.24 2.98 -173.59 -0.52 -10.75 16 12 C 0.04 0.86 6.20 -3.93 -0.02 0.84 16 13 C -0.12 -2.82 5.14 -26.83 -0.14 -2.95 16 14 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 15 C -0.51 -13.87 8.56 -34.44 -0.29 -14.16 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.00 11.30 55.43 0.63 -24.37 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 24 C 0.11 1.90 6.43 -3.71 -0.02 1.88 16 25 S 0.13 1.14 23.22 -107.50 -2.50 -1.36 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.43 4.47 8.31 -40.82 -0.34 4.13 16 31 H 0.14 2.76 3.79 -56.99 -0.22 2.55 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.11 2.78 6.03 -51.93 -0.31 2.47 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.38 7.01 -51.93 -0.36 1.02 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -31.43 343.22 -9.15 -40.58 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.00 Total: 3.97 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.87 Total: 3.12 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.09 Total: -50.24 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.15 Total: -17.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.43 -9.15 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547756443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.666 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds