Wall clock time and date at job start Tue Mar 31 2020 14:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38420 * 119.84129 * 2 1 4 4 C 1.37891 * 120.18038 * 180.02562 * 3 2 1 5 5 C 1.39623 * 119.86903 * 359.97438 * 4 3 2 6 6 C 1.47769 * 120.15726 * 179.97438 * 5 4 3 7 7 O 1.21565 * 120.00387 * 134.92432 * 6 5 4 8 8 N 1.34782 * 119.99974 * 314.92030 * 6 5 4 9 9 C 1.47019 * 125.64655 * 354.80572 * 8 6 5 10 10 C 1.54425 * 107.28339 * 181.02599 * 9 8 6 11 11 C 1.55162 * 102.89386 * 22.18362 * 10 9 8 12 12 O 1.42902 * 111.00197 * 82.59303 * 11 10 9 13 13 C 1.50694 * 111.00451 * 206.41070 * 11 10 9 14 14 H 1.07999 * 120.00403 * 356.81567 * 13 11 10 15 15 C 1.37879 * 120.00046 * 176.82160 * 13 11 10 16 16 N 1.31521 * 119.99917 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00411 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47310 * 59.99589 * 17 15 13 19 19 H 1.48500 * 109.47326 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47007 * 299.99622 * 17 15 13 21 21 C 1.47428 * 125.64844 * 174.76479 * 8 6 5 22 22 C 1.39696 * 119.68850 * 0.25356 * 5 4 3 23 23 Cl 1.73604 * 120.09308 * 179.74295 * 22 5 4 24 24 C 1.38154 * 119.81566 * 359.51718 * 22 5 4 25 25 C 1.50694 * 119.93801 * 180.23072 * 24 22 5 26 26 H 1.09003 * 109.47253 * 90.00192 * 1 2 3 27 27 H 1.09002 * 109.47600 * 209.99511 * 1 2 3 28 28 H 1.08993 * 109.47489 * 330.00062 * 1 2 3 29 29 H 1.08000 * 119.90629 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.06852 * 179.97438 * 4 3 2 31 31 H 1.09009 * 109.88317 * 300.43911 * 9 8 6 32 32 H 1.09002 * 109.88329 * 61.45012 * 9 8 6 33 33 H 1.09003 * 110.72306 * 263.85138 * 10 9 8 34 34 H 1.08999 * 110.76438 * 140.54216 * 10 9 8 35 35 H 0.96705 * 113.99964 * 183.17913 * 12 11 10 36 36 H 0.97002 * 120.00332 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.36405 * 37.06804 * 21 8 6 38 38 H 1.08999 * 110.36322 * 274.74283 * 21 8 6 39 39 H 1.09008 * 109.47006 * 270.25201 * 25 24 22 40 40 H 1.09001 * 109.47362 * 30.24927 * 25 24 22 41 41 H 1.08993 * 109.47356 * 150.25524 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5746 1.2088 -0.0005 5 6 4.2771 0.0022 -0.0005 6 6 5.7548 0.0035 -0.0017 7 8 6.3640 -0.7390 0.7436 8 7 6.4274 0.8280 -0.8291 9 6 5.8238 1.6944 -1.8520 10 6 6.9768 2.4319 -2.5670 11 6 8.1985 1.5166 -2.2890 12 8 8.2464 0.4307 -3.2166 13 6 9.4822 2.3054 -2.3182 14 1 9.4647 3.3564 -2.5658 15 6 10.6791 1.6851 -2.0290 16 7 10.7005 0.4052 -1.7271 17 14 12.2704 2.6629 -2.0645 18 1 12.1928 3.7706 -1.0784 19 1 13.4068 1.7717 -1.7188 20 1 12.4764 3.2239 -3.4239 21 6 7.8900 1.0109 -0.8576 22 6 3.5765 -1.2063 -0.0054 23 17 4.4394 -2.7127 -0.0121 24 6 2.1950 -1.1994 0.0000 25 6 1.4364 -2.5015 0.0001 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6516 2.1336 -0.0004 30 1 4.1102 2.1467 -0.0010 31 1 5.2692 1.0898 -2.5698 32 1 5.1558 2.4151 -1.3803 33 1 7.1294 3.4206 -2.1342 34 1 6.7845 2.5039 -3.6375 35 1 8.9649 -0.1954 -3.0524 36 1 11.5426 -0.0313 -1.5240 37 1 8.3945 0.0624 -0.6734 38 1 8.1939 1.7530 -0.1194 39 1 1.2534 -2.8155 -1.0277 40 1 2.0225 -3.2635 0.5138 41 1 0.4846 -2.3675 0.5139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:07 Heat of formation + Delta-G solvation = -66.509457 kcal Electronic energy + Delta-G solvation = -25433.192631 eV Core-core repulsion = 21724.664290 eV Total energy + Delta-G solvation = -3708.528341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.24091 -38.82602 -37.09278 -36.34388 -34.35743 -33.50199 -32.18580 -31.99066 -30.14701 -28.17232 -27.85335 -26.78666 -24.98934 -23.10316 -22.20227 -21.32117 -19.68051 -19.01021 -17.20651 -16.82561 -16.39417 -15.95608 -15.32366 -15.00762 -14.75693 -14.59172 -14.47031 -14.03808 -13.54126 -13.19288 -13.10594 -13.05173 -12.94650 -12.72220 -12.46227 -12.27993 -12.02487 -11.65449 -11.57675 -11.43558 -11.33652 -11.22645 -11.01960 -10.75770 -10.64685 -10.57164 -10.49509 -10.18618 -9.45437 -9.31733 -8.76246 -8.69106 -8.66743 -8.35946 -7.76964 -6.27917 -4.38062 0.84366 1.08509 2.22626 3.02965 3.21707 3.28071 3.29271 3.47057 3.75297 4.26131 4.50051 4.60050 4.72129 4.86710 4.94507 4.99868 5.20909 5.26148 5.33392 5.40850 5.45194 5.52469 5.57651 5.66709 5.69871 5.81775 5.96461 6.00134 6.06483 6.12699 6.24162 6.31356 6.49933 6.63199 6.71319 6.84305 6.99128 7.25200 7.35105 7.74138 8.00449 8.19197 8.64173 8.70609 9.31144 9.42118 10.79138 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.023495 B = 0.003533 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.432477 B = 7924.411631 C = 8589.664129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.119 4.119 4 C -0.082 4.082 5 C -0.108 4.108 6 C 0.562 3.438 7 O -0.528 6.528 8 N -0.602 5.602 9 C 0.102 3.898 10 C -0.118 4.118 11 C 0.250 3.750 12 O -0.583 6.583 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.095 3.905 22 C 0.007 3.993 23 Cl -0.043 7.043 24 C -0.087 4.087 25 C -0.120 4.120 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.271 0.729 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.708 -0.191 2.519 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.100 4.100 5 C -0.112 4.112 6 C 0.348 3.652 7 O -0.405 6.405 8 N -0.334 5.334 9 C -0.021 4.021 10 C -0.156 4.156 11 C 0.209 3.791 12 O -0.392 6.392 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.531 5.531 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.026 4.026 22 C -0.020 4.020 23 Cl -0.013 7.013 24 C -0.088 4.088 25 C -0.176 4.176 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.235 0.765 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.712 -0.625 2.770 19.916 hybrid contribution 1.541 0.177 0.262 1.573 sum -18.171 -0.449 3.032 18.428 Atomic orbital electron populations 1.20892 0.90501 1.03182 1.02737 1.19806 0.96298 0.91863 0.98640 1.21011 0.93733 0.97789 1.01212 1.21353 0.94171 0.97007 0.97489 1.19963 0.94482 0.92648 1.04129 1.17685 0.85884 0.80444 0.81160 1.90797 1.69124 1.39471 1.41130 1.48634 1.09952 1.40594 1.34219 1.22155 0.96729 0.92897 0.90309 1.22652 0.94338 0.98498 1.00091 1.19593 0.91602 0.84284 0.83627 1.86087 1.56920 1.40004 1.56196 1.21438 0.91016 0.96596 1.48752 0.91544 1.25084 0.99649 0.95115 0.93348 1.69650 1.27796 1.09654 1.46027 0.86456 0.81961 0.79759 0.78688 1.20025 1.21082 1.19996 1.23310 0.75899 1.02369 1.01053 1.20803 0.91519 0.87394 1.02328 1.98395 1.76496 1.30136 1.96307 1.19509 0.91061 0.96277 1.01940 1.20926 1.00001 0.93706 1.03001 0.90680 0.90850 0.91222 0.84995 0.84357 0.92222 0.92530 0.90376 0.90658 0.76543 0.91858 0.89562 0.92038 0.90582 0.90779 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.59 36.00 0.35 -0.45 16 2 C -0.07 -0.68 5.88 -104.54 -0.62 -1.30 16 3 C -0.12 -1.27 9.68 -39.64 -0.38 -1.65 16 4 C -0.08 -1.09 8.43 -39.19 -0.33 -1.42 16 5 C -0.11 -1.83 5.38 -104.94 -0.56 -2.39 16 6 C 0.56 11.74 6.98 -12.36 -0.09 11.66 16 7 O -0.53 -12.77 15.86 5.31 0.08 -12.69 16 8 N -0.60 -12.60 3.33 -171.59 -0.57 -13.17 16 9 C 0.10 1.81 5.93 -3.01 -0.02 1.79 16 10 C -0.12 -2.31 6.14 -24.84 -0.15 -2.46 16 11 C 0.25 6.02 0.88 -89.62 -0.08 5.94 16 12 O -0.58 -15.03 13.17 -35.23 -0.46 -15.49 16 13 C -0.54 -13.93 8.26 -34.44 -0.28 -14.21 16 14 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 15 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 16 N -0.89 -23.89 10.69 55.43 0.59 -23.29 16 17 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.09 2.28 5.53 -2.53 -0.01 2.27 16 22 C 0.01 0.12 6.33 -39.07 -0.25 -0.13 16 23 Cl -0.04 -0.72 25.37 -51.86 -1.32 -2.03 16 24 C -0.09 -1.07 5.88 -104.64 -0.62 -1.68 16 25 C -0.12 -1.13 9.19 36.00 0.33 -0.80 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.43 5.93 -51.93 -0.31 0.13 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.14 1.69 6.19 -52.49 -0.32 1.37 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.06 0.81 5.75 -51.93 -0.30 0.51 16 33 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 34 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.38 10.24 7.25 45.56 0.33 10.57 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.09 2.36 7.42 -51.93 -0.39 1.97 16 38 H 0.06 1.50 8.03 -51.93 -0.42 1.09 16 39 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.07 0.74 6.91 -51.93 -0.36 0.38 16 41 H 0.07 0.53 5.93 -51.93 -0.31 0.22 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -30.28 344.86 -8.87 -39.15 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.56 Total: 10.15 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.81 Total: -3.08 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.02 Total: -36.46 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.38 Total: -28.18 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.32 Total: -2.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.28 -8.87 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.358 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds