Wall clock time and date at job start Tue Mar 31 2020 14:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38420 * 119.84129 * 2 1 4 4 C 1.37891 * 120.18038 * 180.02562 * 3 2 1 5 5 C 1.39623 * 119.86903 * 359.97438 * 4 3 2 6 6 C 1.47769 * 120.15726 * 179.97438 * 5 4 3 7 7 O 1.21565 * 120.00387 * 134.92432 * 6 5 4 8 8 N 1.34782 * 119.99974 * 314.92030 * 6 5 4 9 9 C 1.47019 * 125.64655 * 354.80572 * 8 6 5 10 10 C 1.54425 * 107.28339 * 181.02599 * 9 8 6 11 11 C 1.55162 * 102.89386 * 22.18362 * 10 9 8 12 12 O 1.42902 * 111.00197 * 82.59303 * 11 10 9 13 13 C 1.50694 * 111.00451 * 206.41070 * 11 10 9 14 14 H 1.07999 * 120.00403 * 356.81567 * 13 11 10 15 15 C 1.37879 * 120.00046 * 176.82160 * 13 11 10 16 16 N 1.31521 * 119.99917 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00411 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47310 * 59.99589 * 17 15 13 19 19 H 1.48500 * 109.47326 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47007 * 299.99622 * 17 15 13 21 21 C 1.47428 * 125.64844 * 174.76479 * 8 6 5 22 22 C 1.39696 * 119.68850 * 0.25356 * 5 4 3 23 23 Cl 1.73604 * 120.09308 * 179.74295 * 22 5 4 24 24 C 1.38154 * 119.81566 * 359.51718 * 22 5 4 25 25 C 1.50694 * 119.93801 * 180.23072 * 24 22 5 26 26 H 1.09003 * 109.47253 * 90.00192 * 1 2 3 27 27 H 1.09002 * 109.47600 * 209.99511 * 1 2 3 28 28 H 1.08993 * 109.47489 * 330.00062 * 1 2 3 29 29 H 1.08000 * 119.90629 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.06852 * 179.97438 * 4 3 2 31 31 H 1.09009 * 109.88317 * 300.43911 * 9 8 6 32 32 H 1.09002 * 109.88329 * 61.45012 * 9 8 6 33 33 H 1.09003 * 110.72306 * 263.85138 * 10 9 8 34 34 H 1.08999 * 110.76438 * 140.54216 * 10 9 8 35 35 H 0.96705 * 113.99964 * 183.17913 * 12 11 10 36 36 H 0.97002 * 120.00332 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.36405 * 37.06804 * 21 8 6 38 38 H 1.08999 * 110.36322 * 274.74283 * 21 8 6 39 39 H 1.09008 * 109.47006 * 270.25201 * 25 24 22 40 40 H 1.09001 * 109.47362 * 30.24927 * 25 24 22 41 41 H 1.08993 * 109.47356 * 150.25524 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5746 1.2088 -0.0005 5 6 4.2771 0.0022 -0.0005 6 6 5.7548 0.0035 -0.0017 7 8 6.3640 -0.7390 0.7436 8 7 6.4274 0.8280 -0.8291 9 6 5.8238 1.6944 -1.8520 10 6 6.9768 2.4319 -2.5670 11 6 8.1985 1.5166 -2.2890 12 8 8.2464 0.4307 -3.2166 13 6 9.4822 2.3054 -2.3182 14 1 9.4647 3.3564 -2.5658 15 6 10.6791 1.6851 -2.0290 16 7 10.7005 0.4052 -1.7271 17 14 12.2704 2.6629 -2.0645 18 1 12.1928 3.7706 -1.0784 19 1 13.4068 1.7717 -1.7188 20 1 12.4764 3.2239 -3.4239 21 6 7.8900 1.0109 -0.8576 22 6 3.5765 -1.2063 -0.0054 23 17 4.4394 -2.7127 -0.0121 24 6 2.1950 -1.1994 0.0000 25 6 1.4364 -2.5015 0.0001 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6516 2.1336 -0.0004 30 1 4.1102 2.1467 -0.0010 31 1 5.2692 1.0898 -2.5698 32 1 5.1558 2.4151 -1.3803 33 1 7.1294 3.4206 -2.1342 34 1 6.7845 2.5039 -3.6375 35 1 8.9649 -0.1954 -3.0524 36 1 11.5426 -0.0313 -1.5240 37 1 8.3945 0.0624 -0.6734 38 1 8.1939 1.7530 -0.1194 39 1 1.2534 -2.8155 -1.0277 40 1 2.0225 -3.2635 0.5138 41 1 0.4846 -2.3675 0.5139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:06 Heat of formation + Delta-G solvation = -86.212605 kcal Electronic energy + Delta-G solvation = -25434.047024 eV Core-core repulsion = 21724.664290 eV Total energy + Delta-G solvation = -3709.382734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52936 -40.17897 -38.80436 -37.52755 -36.13567 -34.54710 -34.20893 -32.88212 -31.81291 -29.73735 -28.86055 -27.96150 -26.63959 -24.59321 -23.17464 -22.47866 -21.50203 -20.43880 -19.12736 -18.29267 -17.55004 -17.11054 -17.06920 -16.59599 -16.17951 -16.17016 -15.49710 -15.20879 -14.88515 -14.73357 -14.68331 -14.32450 -13.83581 -13.70310 -13.56120 -13.51338 -13.40371 -13.23714 -13.06202 -12.82226 -12.59343 -12.47457 -12.33718 -12.28167 -12.23426 -12.17486 -11.95070 -11.80440 -11.24208 -10.96330 -10.65808 -10.34002 -9.72797 -9.70624 -9.46027 -8.25768 -6.43667 -0.21828 0.13197 1.09467 1.43283 1.43327 1.52028 1.62828 2.03176 2.37947 2.55745 3.00007 3.39579 3.64003 3.77261 3.83462 4.05693 4.07744 4.10537 4.20323 4.27709 4.37195 4.57303 4.59412 4.69155 4.71248 4.75066 4.84025 4.94521 5.01304 5.05762 5.08634 5.14480 5.19283 5.28633 5.32646 5.39935 5.44846 5.49319 5.74387 5.80679 6.03976 6.56521 6.66354 7.08374 7.27259 7.34241 8.79419 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.023495 B = 0.003533 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.432477 B = 7924.411631 C = 8589.664129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 C -0.107 4.107 4 C -0.082 4.082 5 C -0.141 4.141 6 C 0.556 3.444 7 O -0.577 6.577 8 N -0.607 5.607 9 C 0.106 3.894 10 C -0.111 4.111 11 C 0.232 3.768 12 O -0.590 6.590 13 C -0.556 4.556 14 H 0.073 0.927 15 C 0.024 3.976 16 N -0.918 5.918 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.268 1.268 21 C 0.109 3.891 22 C -0.016 4.016 23 Cl -0.071 7.071 24 C -0.091 4.091 25 C -0.120 4.120 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.149 0.851 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.374 0.626 36 H 0.269 0.731 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.348 2.212 2.156 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.125 4.125 4 C -0.101 4.101 5 C -0.144 4.144 6 C 0.346 3.654 7 O -0.458 6.458 8 N -0.338 5.338 9 C -0.016 4.016 10 C -0.149 4.149 11 C 0.191 3.809 12 O -0.398 6.398 13 C -0.594 4.594 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.558 5.558 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.193 1.193 21 C -0.014 4.014 22 C -0.043 4.043 23 Cl -0.042 7.042 24 C -0.092 4.092 25 C -0.176 4.176 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.191 0.809 30 H 0.167 0.833 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.223 0.777 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.393 1.806 2.384 23.583 hybrid contribution 2.547 -0.563 0.387 2.637 sum -20.846 1.243 2.771 21.066 Atomic orbital electron populations 1.21026 0.87194 1.04842 1.04171 1.20351 0.98497 0.90858 0.95627 1.21474 0.92500 0.99647 0.98850 1.21517 0.95518 0.95805 0.97241 1.19730 0.91596 0.94748 1.08370 1.18442 0.87871 0.79160 0.79948 1.90749 1.70716 1.41308 1.42984 1.48686 1.08642 1.41428 1.35069 1.22312 0.96380 0.93098 0.89768 1.22673 0.92578 0.98414 1.01230 1.19883 0.93358 0.84359 0.83278 1.86079 1.56468 1.40412 1.56886 1.21801 0.91997 0.97075 1.48572 0.90899 1.25874 1.02800 0.95915 0.93040 1.69791 1.28183 1.11048 1.46756 0.85479 0.78085 0.78400 0.78902 1.19280 1.21355 1.19316 1.22849 0.78083 0.99467 1.00993 1.21078 0.92848 0.86017 1.04386 1.98376 1.77416 1.31803 1.96590 1.19893 0.89678 0.98498 1.01088 1.21008 1.00694 0.92022 1.03873 0.89080 0.89725 0.89157 0.80851 0.83335 0.91840 0.88170 0.88570 0.89667 0.77660 0.92167 0.94097 0.93291 0.89602 0.92050 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.59 71.24 0.68 -0.23 16 2 C -0.05 -0.87 5.88 -19.81 -0.12 -0.99 16 3 C -0.11 -1.77 9.68 22.23 0.22 -1.56 16 4 C -0.08 -1.98 8.43 22.52 0.19 -1.79 16 5 C -0.14 -4.71 5.38 -20.07 -0.11 -4.82 16 6 C 0.56 24.18 6.98 86.76 0.61 24.79 16 7 O -0.58 -29.86 15.86 -3.92 -0.06 -29.92 16 8 N -0.61 -26.00 3.33 -815.05 -2.71 -28.71 16 9 C 0.11 3.59 5.93 86.76 0.51 4.11 16 10 C -0.11 -4.21 6.14 31.82 0.20 -4.01 16 11 C 0.23 11.40 0.88 -10.15 -0.01 11.39 16 12 O -0.59 -31.54 13.17 -148.98 -1.96 -33.50 16 13 C -0.56 -29.04 8.26 25.60 0.21 -28.83 16 14 H 0.07 3.62 7.78 -2.91 -0.02 3.59 16 15 C 0.02 1.29 5.29 84.65 0.45 1.74 16 16 N -0.92 -51.33 10.69 21.45 0.23 -51.10 16 17 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.11 5.50 5.53 86.86 0.48 5.98 16 22 C -0.02 -0.49 6.33 22.60 0.14 -0.35 16 23 Cl -0.07 -2.51 25.37 -2.72 -0.07 -2.58 16 24 C -0.09 -2.03 5.88 -19.88 -0.12 -2.14 16 25 C -0.12 -1.98 9.19 71.23 0.65 -1.33 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.08 0.52 5.93 -2.39 -0.01 0.51 16 28 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 29 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 30 H 0.15 3.14 6.19 -2.91 -0.02 3.12 16 31 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.10 2.53 5.75 -2.39 -0.01 2.52 16 33 H 0.10 3.26 8.03 -2.39 -0.02 3.24 16 34 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.37 21.15 7.25 -74.05 -0.54 20.61 16 36 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.04 2.40 7.42 -2.39 -0.02 2.39 16 38 H 0.05 2.52 8.03 -2.39 -0.02 2.50 16 39 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.06 1.19 6.91 -2.39 -0.02 1.17 16 41 H 0.10 1.07 5.93 -2.39 -0.01 1.06 16 Total: -1.00 -71.57 344.86 1.98 -69.60 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.54 Total: 30.17 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 3.99 Total: 1.96 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.48 Total: -79.81 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -2.02 Total: -63.42 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.07 Total: -2.58 kcal Total: -71.57 1.98 -69.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.618 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds