Wall clock time and date at job start Tue Mar 31 2020 14:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37916 * 119.93447 * 2 1 4 4 C 1.39599 * 119.86689 * 179.72740 * 3 2 1 5 5 C 1.47783 * 120.13116 * 180.27750 * 4 3 2 6 6 O 1.21559 * 120.00093 * 225.74769 * 5 4 3 7 7 N 1.34780 * 120.00298 * 45.74647 * 5 4 3 8 8 C 1.47024 * 125.64244 * 4.93245 * 7 5 4 9 9 C 1.54339 * 107.26068 * 178.84986 * 8 7 5 10 10 C 1.55150 * 103.01940 * 338.13802 * 9 8 7 11 11 O 1.42900 * 111.00316 * 277.23379 * 10 9 8 12 12 C 1.50702 * 111.00515 * 153.38673 * 10 9 8 13 13 H 1.08006 * 119.99571 * 6.34526 * 12 10 9 14 14 C 1.37872 * 120.00515 * 186.34962 * 12 10 9 15 15 N 1.31520 * 119.99727 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00542 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46890 * 59.99819 * 16 14 12 18 18 H 1.48497 * 109.47221 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47113 * 300.00088 * 16 14 12 20 20 C 1.47416 * 125.65200 * 185.23658 * 7 5 4 21 21 C 1.39635 * 119.73962 * 0.50261 * 4 3 2 22 22 C 1.50691 * 120.06954 * 179.77327 * 21 4 3 23 23 C 1.37877 * 119.86546 * 359.49926 * 21 4 3 24 24 C 1.38494 * 119.93867 * 179.97438 * 2 1 3 25 25 Cl 1.73606 * 119.86230 * 0.04195 * 24 2 1 26 26 H 1.09003 * 109.47046 * 270.01717 * 1 2 3 27 27 H 1.08999 * 109.47183 * 30.01912 * 1 2 3 28 28 H 1.09000 * 109.47242 * 150.02181 * 1 2 3 29 29 H 1.08003 * 120.06667 * 0.02562 * 3 2 1 30 30 H 1.09007 * 109.88319 * 298.38629 * 8 7 5 31 31 H 1.08999 * 109.88854 * 59.55841 * 8 7 5 32 32 H 1.09000 * 110.84795 * 219.66732 * 9 8 7 33 33 H 1.09007 * 110.66892 * 96.52109 * 9 8 7 34 34 H 0.96699 * 114.00169 * 173.65355 * 11 10 9 35 35 H 0.97000 * 119.99801 * 180.02562 * 15 14 12 36 36 H 1.09005 * 110.36445 * 322.93088 * 20 7 5 37 37 H 1.09005 * 110.36669 * 85.14244 * 20 7 5 38 38 H 1.09002 * 109.47518 * 265.64014 * 22 21 4 39 39 H 1.09001 * 109.47492 * 145.64139 * 22 21 4 40 40 H 1.09001 * 109.47139 * 25.63676 * 22 21 4 41 41 H 1.07993 * 119.93714 * 180.22539 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5911 1.1935 0.0058 5 6 4.3345 2.4708 0.0120 6 8 5.2782 2.6285 -0.7378 7 7 3.9660 3.4609 0.8489 8 6 2.9159 3.3700 1.8738 9 6 2.8679 4.7299 2.6022 10 6 4.2720 5.3268 2.3209 11 8 5.2398 4.8144 3.2390 12 6 4.2368 6.8329 2.3613 13 1 3.3357 7.3439 2.6672 14 6 5.3546 7.5585 2.0079 15 7 6.4519 6.9362 1.6359 16 14 5.3106 9.4253 2.0574 17 1 5.0122 9.8769 3.4403 18 1 6.6286 9.9629 1.6341 19 1 4.2559 9.9202 1.1367 20 6 4.5449 4.8162 0.8841 21 6 4.2824 -0.0197 0.0009 22 6 5.7893 -0.0301 0.0019 23 6 3.5835 -1.2082 0.0008 24 6 2.1981 -1.2001 0.0005 25 17 1.3249 -2.7006 0.0001 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6552 2.1305 0.0004 30 1 1.9545 3.1657 1.4024 31 1 3.1583 2.5795 2.5841 32 1 2.7150 4.5915 3.6725 33 1 2.0877 5.3644 2.1815 34 1 6.1480 5.0824 3.0434 35 1 7.2385 7.4467 1.3876 36 1 5.6173 4.7757 0.6932 37 1 4.0539 5.4576 0.1521 38 1 6.1529 -0.1062 -1.0229 39 1 6.1464 -0.8835 0.5783 40 1 6.1587 0.8919 0.4508 41 1 4.1169 -2.1471 0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:12 Heat of formation + Delta-G solvation = -72.642900 kcal Electronic energy + Delta-G solvation = -25438.765637 eV Core-core repulsion = 21729.971330 eV Total energy + Delta-G solvation = -3708.794307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36766 -38.75985 -37.24863 -36.53933 -34.41262 -33.81142 -32.26378 -31.35660 -30.01848 -29.34121 -27.80383 -25.61016 -24.93941 -23.82662 -22.31698 -21.33395 -19.70713 -18.77327 -17.27389 -16.79893 -16.41043 -16.19417 -15.41754 -15.08050 -14.74659 -14.53038 -14.34959 -14.01792 -13.52814 -13.30098 -13.07610 -13.03100 -12.89959 -12.69968 -12.43265 -12.27934 -11.92941 -11.84628 -11.70963 -11.52770 -11.42746 -11.23018 -11.05468 -10.95238 -10.75833 -10.62758 -10.52159 -10.23557 -9.50939 -9.38156 -8.95772 -8.72604 -8.59837 -8.39752 -7.84611 -6.30680 -4.40761 0.76424 1.11598 1.91718 2.94889 3.19779 3.26239 3.27483 3.43830 3.70397 4.23973 4.52768 4.55225 4.73105 4.91870 4.96505 5.10430 5.29059 5.34942 5.36778 5.43513 5.52503 5.62916 5.69387 5.76286 5.78534 5.85569 5.96734 6.01487 6.04273 6.18235 6.20438 6.43196 6.45692 6.60866 6.67764 6.80243 6.92656 7.20139 7.31195 7.70731 7.98157 8.12624 8.59648 8.64259 9.26420 9.34860 10.76300 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.003207 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.950214 B = 8728.779696 C = 9315.402755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 C -0.075 4.075 4 C -0.107 4.107 5 C 0.564 3.436 6 O -0.538 6.538 7 N -0.602 5.602 8 C 0.102 3.898 9 C -0.118 4.118 10 C 0.249 3.751 11 O -0.582 6.582 12 C -0.539 4.539 13 H 0.066 0.934 14 C 0.072 3.928 15 N -0.892 5.892 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.094 3.906 21 C -0.029 4.029 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.020 4.020 25 Cl -0.071 7.071 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.381 0.619 35 H 0.271 0.729 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 -14.932 -2.433 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.094 4.094 4 C -0.110 4.110 5 C 0.351 3.649 6 O -0.417 6.417 7 N -0.334 5.334 8 C -0.021 4.021 9 C -0.156 4.156 10 C 0.209 3.791 11 O -0.391 6.391 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.531 5.531 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.027 4.027 21 C -0.031 4.031 22 C -0.172 4.172 23 C -0.133 4.133 24 C -0.047 4.047 25 Cl -0.042 7.042 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.191 -15.255 -2.666 18.008 hybrid contribution 0.394 1.111 -0.307 1.218 sum -8.798 -14.144 -2.973 16.920 Atomic orbital electron populations 1.20854 0.89965 1.03475 1.03051 1.19631 0.96851 0.90995 1.01507 1.21222 0.92706 0.97729 0.97738 1.20088 0.93748 0.93883 1.03308 1.17766 0.83689 0.82600 0.80837 1.90774 1.28247 1.81339 1.41340 1.48708 1.37231 1.13711 1.33709 1.22149 0.89963 0.99787 0.90226 1.22636 0.99116 0.93806 1.00054 1.19602 0.84431 0.91393 0.83681 1.86112 1.20750 1.76846 1.55352 1.21417 0.99149 0.90397 1.46799 0.91562 1.25076 0.95199 0.99507 0.93396 1.69707 1.02659 1.36429 1.44262 0.86461 0.77413 0.84362 0.78668 1.19988 1.21083 1.20024 1.23318 1.00165 0.78182 1.00991 1.19865 0.96889 0.90736 0.95577 1.20876 0.89640 1.03511 1.03222 1.20813 0.91627 0.98540 1.02365 1.20911 0.92204 0.86565 1.05007 1.98350 1.76610 1.32383 1.96813 0.90524 0.90960 0.90872 0.84277 0.92477 0.92092 0.90649 0.90347 0.76909 0.91914 0.89316 0.91973 0.90139 0.91507 0.90222 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.61 36.00 0.35 -0.69 16 2 C -0.09 -1.03 5.88 -104.65 -0.62 -1.65 16 3 C -0.08 -1.00 8.08 -39.19 -0.32 -1.32 16 4 C -0.11 -1.70 5.37 -104.97 -0.56 -2.26 16 5 C 0.56 11.08 6.57 -12.36 -0.08 11.00 16 6 O -0.54 -12.24 15.55 5.31 0.08 -12.16 16 7 N -0.60 -12.03 3.33 -171.65 -0.57 -12.60 16 8 C 0.10 1.74 5.93 -3.05 -0.02 1.72 16 9 C -0.12 -2.25 6.13 -24.89 -0.15 -2.41 16 10 C 0.25 5.85 0.87 -89.63 -0.08 5.77 16 11 O -0.58 -14.48 13.16 -35.23 -0.46 -14.94 16 12 C -0.54 -13.67 8.27 -34.44 -0.28 -13.96 16 13 H 0.07 1.64 7.79 -52.48 -0.41 1.23 16 14 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 15 N -0.89 -23.36 10.69 55.43 0.59 -22.76 16 16 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 C 0.09 2.20 5.41 -2.54 -0.01 2.18 16 21 C -0.03 -0.42 5.91 -104.24 -0.62 -1.04 16 22 C -0.12 -1.59 9.10 36.00 0.33 -1.26 16 23 C -0.11 -1.38 9.48 -39.60 -0.38 -1.75 16 24 C -0.02 -0.23 6.32 -39.38 -0.25 -0.48 16 25 Cl -0.07 -0.71 27.27 -51.86 -1.41 -2.12 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.07 0.61 6.89 -51.93 -0.36 0.25 16 29 H 0.14 1.71 6.24 -52.48 -0.33 1.38 16 30 H 0.06 0.80 5.80 -51.93 -0.30 0.50 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.39 8.03 -51.92 -0.42 0.97 16 34 H 0.38 9.75 7.57 45.56 0.34 10.09 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 36 H 0.09 2.33 7.28 -51.93 -0.38 1.96 16 37 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 40 H 0.08 1.32 6.36 -51.93 -0.33 0.99 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -28.23 348.18 -9.01 -37.25 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.68 Total: 11.52 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.78 Total: -4.40 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.02 Total: -35.37 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.38 Total: -27.10 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.41 Total: -2.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.23 -9.01 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.396 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds