Wall clock time and date at job start Tue Mar 31 2020 13:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48498 * 109.46996 * 239.99856 * 3 2 1 5 5 H 1.48497 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47192 * 119.99723 * 3 2 1 7 7 C 1.37880 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99700 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00093 * 270.00359 * 10 9 7 12 12 C 1.53005 * 109.46882 * 269.99875 * 11 10 9 13 13 C 1.53003 * 117.49580 * 243.62221 * 12 11 10 14 14 C 1.52996 * 59.99885 * 252.51122 * 13 12 11 15 15 C 1.34777 * 119.99795 * 89.99887 * 10 9 7 16 16 O 1.21607 * 120.00166 * 0.02562 * 15 10 9 17 17 N 1.34773 * 120.00169 * 179.97438 * 15 10 9 18 18 C 1.40779 * 120.00522 * 185.38202 * 17 15 10 19 19 C 1.34227 * 122.53332 * 205.19036 * 18 17 15 20 20 S 1.70594 * 110.96597 * 180.23840 * 19 18 17 21 21 C 1.75802 * 91.64562 * 359.65865 * 20 19 18 22 22 C 1.46558 * 125.40651 * 180.08660 * 21 20 19 23 23 N 1.34776 * 119.99968 * 0.29072 * 22 21 20 24 24 O 1.21708 * 120.00044 * 180.29210 * 22 21 20 25 25 C 1.36687 * 109.18883 * 0.33372 * 21 20 19 26 26 H 0.97003 * 120.00143 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47009 * 60.00122 * 9 7 2 28 28 H 1.08996 * 109.47120 * 300.00008 * 9 7 2 29 29 H 1.08995 * 109.47368 * 30.00034 * 11 10 9 30 30 H 1.09002 * 109.46868 * 150.00127 * 11 10 9 31 31 H 1.09000 * 115.55085 * 29.33179 * 12 11 10 32 32 H 1.08999 * 117.50158 * 0.02562 * 13 12 11 33 33 H 1.09000 * 117.49521 * 145.01881 * 13 12 11 34 34 H 1.09000 * 117.49859 * 252.51120 * 14 13 12 35 35 H 1.09005 * 117.49872 * 107.48753 * 14 13 12 36 36 H 0.97005 * 119.99682 * 5.38147 * 17 15 10 37 37 H 1.07999 * 124.51300 * 359.96794 * 19 18 17 38 38 H 0.97002 * 119.99998 * 359.97438 * 23 22 21 39 39 H 0.96997 * 120.00640 * 180.02562 * 23 22 21 40 40 H 1.07999 * 123.37271 * 179.78759 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 2.6782 -4.1699 -1.2674 12 6 1.7472 -5.3014 -1.7078 13 6 2.3392 -6.7095 -1.7960 14 6 2.0066 -5.9380 -3.0746 15 6 2.6419 -4.1243 1.1686 16 8 2.2473 -3.6619 2.2218 17 7 3.5173 -5.1490 1.1685 18 6 3.8888 -5.7577 2.3823 19 6 5.0560 -6.4017 2.5393 20 16 5.1989 -7.0297 4.1190 21 6 3.6276 -6.3844 4.5722 22 6 3.0003 -6.5237 5.8894 23 7 3.6391 -7.1873 6.8733 24 8 1.9024 -6.0402 6.0947 25 6 3.0815 -5.7368 3.4995 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5574 -0.8880 28 1 0.6248 -2.5562 0.8919 29 1 2.6854 -3.3886 -2.0273 30 1 3.6878 -4.5599 -1.1375 31 1 0.7105 -5.2102 -1.3837 32 1 3.3918 -6.8299 -1.5397 33 1 1.6919 -7.5451 -1.5295 34 1 1.1406 -6.2661 -3.6495 35 1 2.8405 -5.5507 -3.6601 36 1 3.8915 -5.4671 0.3319 37 1 5.8029 -6.5117 1.7671 38 1 4.5140 -7.5730 6.7095 39 1 3.2239 -7.2798 7.7449 40 1 2.1146 -5.2564 3.5248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603017203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:49 Heat of formation + Delta-G solvation = 4.065124 kcal Electronic energy + Delta-G solvation = -24771.265484 eV Core-core repulsion = 21100.133944 eV Total energy + Delta-G solvation = -3671.131540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33343 -39.37839 -37.87649 -36.96467 -34.45575 -33.84248 -33.49017 -32.33605 -29.40842 -27.78798 -26.21573 -24.93307 -23.28735 -22.36822 -21.38566 -20.86630 -19.92037 -19.12072 -18.31850 -17.90197 -17.05353 -16.50900 -16.14119 -15.66231 -15.10098 -15.05112 -14.89570 -14.70335 -14.25770 -13.90643 -13.74801 -13.26345 -13.06337 -13.02650 -12.71156 -12.31880 -12.16664 -11.59528 -11.50707 -11.21705 -11.14378 -10.91525 -10.61569 -10.38590 -10.26097 -10.17278 -10.06496 -9.94264 -9.88483 -9.63155 -9.31540 -8.80478 -8.41592 -7.95688 -7.59699 -6.02831 -4.07592 0.48208 1.42751 1.75597 2.38064 3.14533 3.22812 3.33110 3.38079 3.38355 3.43075 3.81110 3.88409 4.34280 4.48794 4.79907 4.84806 4.94478 5.05910 5.10979 5.31408 5.32065 5.36818 5.61208 5.64039 5.74880 5.91171 5.93394 6.01994 6.10884 6.30607 6.38222 6.59423 6.76005 6.87681 7.12056 7.33607 7.48055 7.63643 7.94221 8.10747 8.23349 8.52189 8.92129 9.18905 9.57551 11.05098 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.003988 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.344436 B = 7018.499993 C = 8682.402411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.261 3.739 10 N -0.601 5.601 11 C 0.143 3.857 12 C -0.166 4.166 13 C -0.185 4.185 14 C -0.175 4.175 15 C 0.699 3.301 16 O -0.562 6.562 17 N -0.681 5.681 18 C 0.168 3.832 19 C -0.289 4.289 20 S 0.189 5.811 21 C -0.267 4.267 22 C 0.598 3.402 23 N -0.854 5.854 24 O -0.523 6.523 25 C -0.035 4.035 26 H 0.264 0.736 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.403 0.597 37 H 0.169 0.831 38 H 0.397 0.603 39 H 0.407 0.593 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.958 -19.360 2.209 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.142 3.858 10 N -0.335 5.335 11 C 0.018 3.982 12 C -0.186 4.186 13 C -0.222 4.222 14 C -0.212 4.212 15 C 0.401 3.599 16 O -0.438 6.438 17 N -0.331 5.331 18 C 0.059 3.941 19 C -0.431 4.431 20 S 0.453 5.547 21 C -0.388 4.388 22 C 0.382 3.618 23 N -0.418 5.418 24 O -0.400 6.400 25 C -0.070 4.070 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.240 0.760 37 H 0.187 0.813 38 H 0.226 0.774 39 H 0.239 0.761 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.810 -19.242 3.599 22.862 hybrid contribution 0.006 1.405 -1.224 1.863 sum 11.816 -17.836 2.375 21.527 Atomic orbital electron populations 1.69916 1.05957 1.27153 1.50213 1.24907 0.94855 0.99127 0.95028 0.86571 0.79537 0.82804 0.78571 1.20310 1.21162 1.20203 1.21398 0.93309 0.90710 1.51355 0.92560 1.19270 0.86740 0.81162 0.98671 1.47549 1.47580 1.36304 1.02064 1.20979 0.94262 0.95010 0.87916 1.22985 1.01706 0.93664 1.00243 1.23011 1.01148 0.95437 1.02557 1.22903 1.03422 1.04211 0.90691 1.15938 0.79430 0.79226 0.85350 1.90925 1.60891 1.62213 1.29780 1.42903 1.47757 1.35653 1.06822 1.16346 0.92458 0.97374 0.87943 1.24582 1.01613 1.13131 1.03735 1.82414 1.15711 1.53350 1.03203 1.24266 1.01585 1.13709 0.99208 1.16914 0.84520 0.77497 0.82830 1.43637 1.23357 1.59472 1.15333 1.90924 1.19746 1.47478 1.81813 1.21033 1.01915 0.94568 0.89511 0.92631 0.94615 0.93580 0.88907 0.92348 0.87131 0.89284 0.89065 0.88882 0.88718 0.76031 0.81345 0.77429 0.76149 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.26 6.72 5.16 -5.19 -0.03 6.69 16 10 N -0.60 -12.45 2.46 -180.80 -0.44 -12.90 16 11 C 0.14 2.21 5.50 -4.04 -0.02 2.19 16 12 C -0.17 -2.23 6.01 -90.62 -0.54 -2.77 16 13 C -0.18 -1.94 10.18 -26.73 -0.27 -2.22 16 14 C -0.17 -1.85 10.25 -26.73 -0.27 -2.12 16 15 C 0.70 14.76 8.15 -86.92 -0.71 14.05 16 16 O -0.56 -14.43 13.41 5.27 0.07 -14.36 16 17 N -0.68 -10.86 5.31 -15.33 -0.08 -10.94 16 18 C 0.17 2.55 6.34 -85.30 -0.54 2.01 16 19 C -0.29 -3.29 10.88 29.32 0.32 -2.97 16 20 S 0.19 1.80 22.14 -107.50 -2.38 -0.58 16 21 C -0.27 -3.76 6.45 -36.79 -0.24 -3.99 16 22 C 0.60 8.50 8.05 -12.91 -0.10 8.40 16 23 N -0.85 -7.44 8.87 30.23 0.27 -7.17 16 24 O -0.52 -9.91 17.67 5.18 0.09 -9.82 16 25 C -0.03 -0.60 8.65 -40.28 -0.35 -0.95 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 29 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 30 H 0.06 0.74 6.02 -51.93 -0.31 0.43 16 31 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 5.11 6.39 -40.82 -0.26 4.85 16 37 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.40 2.32 7.94 -40.82 -0.32 2.00 16 39 H 0.41 2.85 8.93 -40.82 -0.36 2.49 16 40 H 0.18 3.66 6.31 -52.49 -0.33 3.33 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -35.99 358.28 -9.43 -45.41 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.89 Total: 9.02 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -3.18 Total: 4.79 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.48 Total: -56.83 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.16 Total: -24.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.99 -9.43 -45.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603017203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.479 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds