Wall clock time and date at job start Tue Mar 31 2020 14:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30089 * 124.88343 * 2 1 4 4 C 1.35571 * 108.84058 * 180.02562 * 3 2 1 5 5 C 1.40292 * 106.62763 * 359.97438 * 4 3 2 6 6 C 1.38582 * 119.92751 * 180.02562 * 5 4 3 7 7 C 1.38217 * 120.22373 * 0.02562 * 6 5 4 8 8 C 1.38185 * 120.67155 * 359.68715 * 7 6 5 9 9 C 1.39380 * 120.24159 * 0.60693 * 8 7 6 10 10 C 1.47386 * 120.30154 * 179.68685 * 9 8 7 11 11 O 1.21610 * 119.99872 * 179.73435 * 10 9 8 12 12 N 1.34775 * 120.00200 * 359.97438 * 10 9 8 13 13 C 1.39366 * 120.00099 * 174.04518 * 12 10 9 14 14 C 1.38626 * 119.58226 * 185.53897 * 13 12 10 15 15 C 1.40807 * 118.78987 * 179.76486 * 14 13 12 16 16 C 1.41551 * 120.99355 * 180.26270 * 15 14 13 17 17 H 1.07992 * 119.99865 * 212.58618 * 16 15 14 18 18 C 1.40033 * 119.99639 * 32.58999 * 16 15 14 19 19 N 1.30740 * 120.00599 * 357.27447 * 18 16 15 20 20 Si 1.86804 * 119.99713 * 177.28115 * 18 16 15 21 21 H 1.48501 * 109.47260 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.46995 * 119.99611 * 20 18 16 23 23 H 1.48503 * 109.47190 * 239.99518 * 20 18 16 24 24 C 1.41177 * 118.01415 * 0.50274 * 15 14 13 25 25 C 1.37586 * 119.01516 * 359.75700 * 24 15 14 26 26 N 1.32086 * 121.11668 * 359.97438 * 25 24 15 27 27 O 1.34147 * 124.88018 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46582 * 90.00207 * 1 2 3 29 29 H 1.08992 * 109.47190 * 210.00289 * 1 2 3 30 30 H 1.08998 * 109.46991 * 330.00671 * 1 2 3 31 31 H 1.08005 * 119.89241 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.66823 * 179.97438 * 7 6 5 33 33 H 1.08001 * 119.88085 * 180.30461 * 8 7 6 34 34 H 0.97003 * 119.99864 * 354.05542 * 12 10 9 35 35 H 1.07997 * 120.60363 * 0.02702 * 14 13 12 36 36 H 0.96996 * 120.00359 * 179.97438 * 19 18 16 37 37 H 1.07995 * 120.49356 * 179.77947 * 24 15 14 38 38 H 1.08003 * 119.44113 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2510 1.0671 0.0000 4 6 3.5539 0.6925 -0.0006 5 6 3.5682 -0.7104 -0.0003 6 6 4.7762 -1.3895 -0.0003 7 6 5.9680 -0.6893 0.0001 8 6 5.9737 0.6925 -0.0061 9 6 4.7726 1.3995 0.0000 10 6 4.7772 2.8734 0.0003 11 8 3.7259 3.4847 0.0007 12 7 5.9465 3.5436 -0.0047 13 6 5.9535 4.9317 -0.1296 14 6 7.1610 5.6018 -0.2497 15 6 7.1484 7.0038 -0.3799 16 6 8.3536 7.7345 -0.5112 17 1 8.4283 8.7309 -0.1016 18 6 9.4490 7.1653 -1.1723 19 7 9.3768 5.9396 -1.6215 20 14 11.0136 8.1572 -1.4124 21 1 10.8404 9.5066 -0.8171 22 1 12.1461 7.4640 -0.7473 23 1 11.2980 8.2897 -2.8639 24 6 5.8982 7.6595 -0.3705 25 6 4.7522 6.9092 -0.2408 26 7 4.8063 5.5944 -0.1264 27 8 2.2741 -1.1005 -0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 4.7866 -2.4695 -0.0005 32 1 6.9042 -1.2277 0.0006 33 1 6.9124 1.2266 -0.0107 34 1 6.7831 3.0599 0.0785 35 1 8.0942 5.0582 -0.2478 36 1 10.1354 5.5454 -2.0798 37 1 5.8421 8.7339 -0.4641 38 1 3.7921 7.4037 -0.2323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619298422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:50 Heat of formation + Delta-G solvation = 51.548918 kcal Electronic energy + Delta-G solvation = -25535.948629 eV Core-core repulsion = 21731.432189 eV Total energy + Delta-G solvation = -3804.516440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.37350 -39.75761 -38.25069 -37.21223 -34.95507 -34.25884 -33.72539 -31.78245 -31.20804 -30.45379 -28.47741 -28.19824 -25.97174 -24.00712 -23.23271 -21.99063 -21.90289 -21.21184 -19.79363 -18.22915 -17.88962 -17.36680 -16.98399 -16.54443 -15.81509 -15.31390 -15.17742 -14.53268 -14.18051 -14.12082 -13.99299 -13.89228 -13.67479 -13.48464 -12.99472 -12.79261 -12.68105 -12.55635 -12.23682 -12.06790 -12.01186 -11.42009 -11.36266 -11.17808 -10.89857 -10.52031 -10.28418 -10.10408 -9.70170 -9.39663 -9.36209 -8.98534 -8.54855 -7.89020 -7.74474 -7.00296 -6.68420 -4.63209 0.27604 0.95746 2.31858 2.32295 2.59981 2.80751 3.03365 3.08625 3.13656 3.29221 3.51439 3.67858 3.88599 3.99500 4.40149 4.60942 4.72855 4.76647 4.84212 4.91382 5.10382 5.12784 5.22360 5.43295 5.63099 5.65744 5.72816 5.94581 6.02266 6.03840 6.13328 6.38598 6.58221 6.65606 6.79905 6.97421 7.16715 7.37631 7.48886 7.57625 7.80829 7.98181 8.20937 8.44558 8.71714 8.78885 8.89592 9.67573 10.16075 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.002976 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.077880 B = 9407.794535 C =10641.864769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.240 3.760 3 N -0.448 5.448 4 C 0.073 3.927 5 C -0.003 4.003 6 C -0.074 4.074 7 C -0.100 4.100 8 C -0.089 4.089 9 C -0.067 4.067 10 C 0.533 3.467 11 O -0.445 6.445 12 N -0.654 5.654 13 C 0.334 3.666 14 C -0.231 4.231 15 C 0.140 3.860 16 C -0.457 4.457 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.805 5.805 20 Si 0.918 3.082 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.274 1.274 24 C -0.275 4.275 25 C 0.115 3.885 26 N -0.547 5.547 27 O -0.217 6.217 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.406 0.594 35 H 0.138 0.862 36 H 0.279 0.721 37 H 0.103 0.897 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 -16.304 2.231 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.029 3.971 3 N -0.176 5.176 4 C -0.041 4.041 5 C -0.054 4.054 6 C -0.093 4.093 7 C -0.118 4.118 8 C -0.109 4.109 9 C -0.071 4.071 10 C 0.317 3.683 11 O -0.313 6.313 12 N -0.301 5.301 13 C 0.109 3.891 14 C -0.256 4.256 15 C 0.131 3.869 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.432 5.432 20 Si 0.742 3.258 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.299 4.299 25 C -0.040 4.040 26 N -0.266 5.266 27 O -0.109 6.109 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.242 0.758 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.673 -15.935 2.184 17.821 hybrid contribution 2.308 -0.128 -0.371 2.341 sum -5.366 -16.063 1.812 17.033 Atomic orbital electron populations 1.20413 0.80733 1.05570 1.05204 1.26780 0.96890 0.78127 0.95280 1.70820 1.00685 1.27845 1.18299 1.19525 0.91607 0.90474 1.02489 1.20233 0.84149 0.94195 1.06781 1.19982 0.87282 1.00341 1.01742 1.20937 0.97316 0.93711 0.99845 1.21390 0.97052 0.94499 0.97935 1.19525 0.90517 0.94065 1.03019 1.18015 0.84797 0.85960 0.79518 1.90934 1.30034 1.68008 1.42359 1.43306 1.08730 1.05748 1.72300 1.18220 0.91028 0.82336 0.97499 1.21828 0.95685 0.95919 1.12185 1.17625 0.92311 0.91158 0.85773 1.19568 0.95384 1.01689 1.32279 0.90114 1.25917 0.99944 0.94916 0.93578 1.69709 1.31295 1.13306 1.28915 0.86108 0.80364 0.80585 0.78725 1.18464 1.19857 1.19901 1.22018 0.93605 0.99453 1.14821 1.21787 0.96881 0.88822 0.96512 1.67231 1.26975 1.09295 1.23069 1.84471 1.15060 1.36466 1.74895 0.88316 0.89011 0.87417 0.84429 0.83510 0.83879 0.75828 0.84439 0.91032 0.87840 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.00 0.38 -0.09 16 2 C 0.24 3.17 8.24 -13.02 -0.11 3.06 16 3 N -0.45 -7.95 10.62 -8.48 -0.09 -8.04 16 4 C 0.07 1.25 6.84 -84.44 -0.58 0.67 16 5 C 0.00 -0.05 7.42 -38.68 -0.29 -0.33 16 6 C -0.07 -0.77 10.05 -39.46 -0.40 -1.17 16 7 C -0.10 -0.95 10.00 -39.61 -0.40 -1.34 16 8 C -0.09 -1.08 9.53 -39.18 -0.37 -1.46 16 9 C -0.07 -1.13 5.90 -104.74 -0.62 -1.75 16 10 C 0.53 11.28 7.72 -12.54 -0.10 11.19 16 11 O -0.45 -11.29 14.33 5.27 0.08 -11.22 16 12 N -0.65 -13.46 5.33 -12.48 -0.07 -13.52 16 13 C 0.33 8.31 7.41 -154.78 -1.15 7.16 16 14 C -0.23 -5.89 8.61 -38.47 -0.33 -6.22 16 15 C 0.14 3.70 5.59 -106.55 -0.60 3.10 16 16 C -0.46 -11.79 9.12 -37.65 -0.34 -12.13 16 17 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 18 C 0.07 1.77 5.43 -17.34 -0.09 1.67 16 19 N -0.81 -19.84 10.60 55.55 0.59 -19.25 16 20 Si 0.92 18.16 29.56 -169.99 -5.02 13.13 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.28 -6.82 9.90 -38.70 -0.38 -7.21 16 25 C 0.11 2.81 11.15 -17.68 -0.20 2.61 16 26 N -0.55 -14.39 7.85 -12.54 -0.10 -14.49 16 27 O -0.22 -2.84 10.77 3.71 0.04 -2.80 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 1.42 6.41 -52.49 -0.34 1.08 16 34 H 0.41 6.71 6.75 -40.82 -0.28 6.43 16 35 H 0.14 3.46 6.14 -52.49 -0.32 3.14 16 36 H 0.28 6.22 8.29 -40.82 -0.34 5.89 16 37 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.12 2.67 8.06 -52.48 -0.42 2.24 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -35.62 335.88 -8.52 -44.14 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.44 Total: 9.22 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -5.56 Total: -2.22 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.33 Total: -55.31 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.12 Total: -14.02 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.62 -8.52 -44.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619298422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.686 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds