Wall clock time and date at job start Tue Mar 31 2020 13:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47033 * 274.62265 * 3 2 1 5 5 H 1.48498 * 109.47241 * 34.62375 * 3 2 1 6 6 H 1.48502 * 109.47029 * 154.61964 * 3 2 1 7 7 C 1.38817 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99361 * 144.07416 * 7 2 1 9 9 N 1.36931 * 120.00338 * 324.06986 * 7 2 1 10 10 C 1.47353 * 121.30540 * 330.74197 * 9 7 2 11 11 C 1.53197 * 108.79611 * 230.21969 * 10 9 7 12 12 O 1.43142 * 109.74122 * 308.78615 * 11 10 9 13 13 C 1.42598 * 113.63230 * 61.69534 * 12 11 10 14 14 H 1.09003 * 109.34498 * 56.07351 * 13 12 11 15 15 C 1.52786 * 111.11288 * 176.38444 * 13 12 11 16 16 C 1.51964 * 109.55918 * 181.89255 * 15 13 12 17 17 N 1.46847 * 109.37832 * 306.69650 * 16 15 13 18 18 C 1.34768 * 120.40914 * 231.88760 * 17 16 15 19 19 O 1.21689 * 119.99935 * 172.98229 * 18 17 16 20 20 C 1.46681 * 120.00195 * 352.97673 * 18 17 16 21 21 C 1.35662 * 126.13255 * 159.78989 * 20 18 17 22 22 N 1.30943 * 114.19421 * 179.78906 * 21 20 18 23 23 C 1.29425 * 117.36124 * 0.52902 * 22 21 20 24 24 S 1.70951 * 110.39491 * 359.70437 * 23 22 21 25 25 C 1.47132 * 119.17589 * 51.90576 * 17 16 15 26 26 C 1.46875 * 121.30399 * 150.72069 * 9 7 2 27 27 H 1.09003 * 109.65308 * 247.67195 * 26 9 7 28 28 H 0.96998 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.57972 * 350.01402 * 10 9 7 30 30 H 1.08996 * 109.58153 * 110.42556 * 10 9 7 31 31 H 1.09009 * 109.42167 * 188.70563 * 11 10 9 32 32 H 1.09007 * 109.43042 * 68.87288 * 11 10 9 33 33 H 1.09001 * 109.58072 * 302.33200 * 15 13 12 34 34 H 1.09008 * 109.57882 * 62.72721 * 15 13 12 35 35 H 1.08996 * 109.72647 * 186.55075 * 16 15 13 36 36 H 1.09009 * 109.16100 * 66.49348 * 16 15 13 37 37 H 1.08006 * 122.90060 * 359.97211 * 21 20 18 38 38 H 1.07997 * 124.80380 * 179.68844 * 23 22 21 39 39 H 1.09002 * 109.72409 * 187.10242 * 25 17 16 40 40 H 1.09001 * 109.72712 * 66.43652 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4000 2.1028 -1.3955 5 1 1.5000 2.6225 0.7955 6 1 3.5932 1.4139 0.6001 7 6 2.0102 -1.2022 0.0005 8 1 2.9362 -1.2914 -0.5483 9 7 1.5210 -2.2750 0.6969 10 6 0.6994 -2.0925 1.9064 11 6 1.2718 -2.9648 3.0281 12 8 1.4377 -4.3073 2.5598 13 6 2.3506 -4.4240 1.4707 14 1 3.3123 -3.9991 1.7585 15 6 2.5521 -5.8861 1.0757 16 6 3.5645 -5.9730 -0.0543 17 7 3.1479 -5.0896 -1.1508 18 6 3.0575 -5.5612 -2.4100 19 8 2.5908 -4.8617 -3.2896 20 6 3.5217 -6.9176 -2.7202 21 6 3.1621 -7.6593 -3.7977 22 7 3.7224 -8.8417 -3.8465 23 6 4.5239 -9.1604 -2.8815 24 16 4.6406 -7.8788 -1.7562 25 6 2.8307 -3.6830 -0.8576 26 6 1.7942 -3.6526 0.2671 27 1 0.8703 -4.1206 -0.0731 28 1 -0.4850 0.8400 -0.0004 29 1 0.7229 -1.0457 2.2094 30 1 -0.3279 -2.3918 1.6988 31 1 0.5877 -2.9588 3.8769 32 1 2.2379 -2.5674 3.3394 33 1 2.9115 -6.4507 1.9360 34 1 1.6067 -6.3049 0.7306 35 1 3.6244 -6.9993 -0.4164 36 1 4.5408 -5.6590 0.3152 37 1 2.4754 -7.3039 -4.5518 38 1 5.0450 -10.1027 -2.7987 39 1 2.4220 -3.2049 -1.7478 40 1 3.7333 -3.1608 -0.5404 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074188317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:44 Heat of formation + Delta-G solvation = 15.909318 kcal Electronic energy + Delta-G solvation = -25953.355381 eV Core-core repulsion = 22282.737443 eV Total energy + Delta-G solvation = -3670.617937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48454 -39.65097 -38.47260 -36.23503 -34.75440 -32.16593 -31.59873 -30.86279 -29.91602 -27.33335 -26.36654 -24.98725 -24.15157 -22.52305 -21.83105 -20.90771 -19.82303 -19.58476 -18.44031 -16.98037 -16.72648 -16.23627 -15.60493 -15.53644 -15.23572 -15.03625 -14.51510 -14.32756 -14.20198 -14.08421 -13.76425 -13.59905 -13.18967 -12.99018 -12.79247 -12.71956 -12.11311 -11.81989 -11.48339 -11.30465 -10.99900 -10.94370 -10.71551 -10.38981 -10.37258 -10.14524 -10.03780 -9.82512 -9.70852 -9.52010 -9.18372 -9.13409 -8.53538 -8.39342 -6.86292 -5.96722 -3.28788 0.06943 0.94375 1.33418 2.34930 2.89686 3.15363 3.32118 3.42331 3.45692 4.02723 4.12290 4.39288 4.45447 4.70440 4.91482 5.02138 5.09653 5.13162 5.23453 5.28791 5.39963 5.56648 5.64855 5.78306 5.82377 5.86885 5.98551 6.03769 6.11680 6.18338 6.32988 6.51957 6.60054 6.72450 6.90329 7.19260 7.31605 7.43152 7.72833 7.77286 8.11779 8.22813 8.97299 9.67395 10.28784 11.08306 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.003994 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.032399 B = 7009.668658 C = 7994.221221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.283 4.283 8 H 0.071 0.929 9 N -0.582 5.582 10 C 0.141 3.859 11 C 0.043 3.957 12 O -0.386 6.386 13 C 0.078 3.922 14 H 0.055 0.945 15 C -0.122 4.122 16 C 0.104 3.896 17 N -0.605 5.605 18 C 0.592 3.408 19 O -0.516 6.516 20 C -0.283 4.283 21 C 0.111 3.889 22 N -0.477 5.477 23 C 0.003 3.997 24 S 0.189 5.811 25 C 0.128 3.872 26 C 0.136 3.864 27 H 0.037 0.963 28 H 0.256 0.744 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.188 0.812 38 H 0.201 0.799 39 H 0.107 0.893 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.759 -16.757 2.215 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.179 4.179 3 Si 0.707 3.293 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.411 4.411 8 H 0.088 0.912 9 N -0.306 5.306 10 C 0.015 3.985 11 C -0.035 4.035 12 O -0.305 6.305 13 C 0.018 3.982 14 H 0.073 0.927 15 C -0.161 4.161 16 C -0.021 4.021 17 N -0.339 5.339 18 C 0.377 3.623 19 O -0.393 6.393 20 C -0.407 4.407 21 C -0.046 4.046 22 N -0.190 5.190 23 C -0.291 4.291 24 S 0.444 5.556 25 C 0.007 3.993 26 C 0.028 3.972 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.205 0.795 38 H 0.217 0.783 39 H 0.125 0.875 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.783 -16.684 2.299 19.477 hybrid contribution -0.163 1.334 -0.641 1.489 sum 9.620 -15.350 1.658 18.191 Atomic orbital electron populations 1.70349 1.05901 1.26245 1.48143 1.24914 0.94471 0.99018 0.99473 0.86667 0.80293 0.84336 0.77960 1.21177 1.21417 1.20130 1.18878 1.02659 0.88713 1.30863 0.91176 1.44041 1.61404 0.99167 1.26028 1.21344 0.93496 0.98460 0.85208 1.23243 1.00061 0.82785 0.97421 1.87743 1.64851 1.28012 1.49928 1.22400 0.92631 0.94353 0.88819 0.92708 1.21549 0.99973 0.97010 0.97545 1.21823 0.98746 0.93783 0.87768 1.48124 1.67079 1.12396 1.06272 1.16771 0.78685 0.83946 0.82880 1.90881 1.44680 1.57553 1.46226 1.25914 1.09591 1.02022 1.03180 1.22245 0.98281 0.87542 0.96506 1.66330 1.09910 1.17528 1.25265 1.29110 1.00326 1.05572 0.94076 1.84207 1.40408 1.07770 1.23224 1.21808 0.99021 0.77753 1.00755 1.21288 0.95838 0.88484 0.91571 0.94512 0.93470 0.90688 0.95125 0.89882 0.93760 0.89738 0.90736 0.89848 0.90390 0.79543 0.78259 0.87473 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.75 12.76 55.49 0.71 -24.04 16 2 C 0.02 0.65 4.38 -17.43 -0.08 0.58 16 3 Si 0.88 20.77 29.67 -169.99 -5.04 15.73 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.28 -7.43 8.68 -15.06 -0.13 -7.56 16 8 H 0.07 1.80 6.54 -52.48 -0.34 1.46 16 9 N -0.58 -14.01 3.02 -164.35 -0.50 -14.51 16 10 C 0.14 3.19 5.72 -3.47 -0.02 3.17 16 11 C 0.04 0.79 6.96 37.26 0.26 1.04 16 12 O -0.39 -7.19 10.49 -35.23 -0.37 -7.56 16 13 C 0.08 1.34 2.50 -26.63 -0.07 1.27 16 14 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.12 -1.60 5.72 -27.37 -0.16 -1.76 16 16 C 0.10 1.22 5.44 -4.38 -0.02 1.19 16 17 N -0.61 -9.48 2.98 -175.08 -0.52 -10.01 16 18 C 0.59 9.74 7.62 -12.86 -0.10 9.64 16 19 O -0.52 -10.51 16.34 5.20 0.08 -10.43 16 20 C -0.28 -3.65 6.03 -37.10 -0.22 -3.87 16 21 C 0.11 1.39 11.15 -18.85 -0.21 1.18 16 22 N -0.48 -5.49 10.51 -15.38 -0.16 -5.65 16 23 C 0.00 0.03 12.22 51.75 0.63 0.66 16 24 S 0.19 1.61 18.94 -107.50 -2.04 -0.43 16 25 C 0.13 2.44 4.54 -3.71 -0.02 2.42 16 26 C 0.14 2.81 3.00 -67.53 -0.20 2.61 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.81 6.98 -51.93 -0.36 1.44 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.32 8.14 -51.92 -0.42 0.89 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.08 0.83 3.48 -20.85 -0.07 0.76 16 36 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.19 2.25 8.06 -52.48 -0.42 1.82 16 38 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.11 2.40 6.83 -51.93 -0.35 2.05 16 40 H 0.08 1.44 7.41 -51.93 -0.38 1.06 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -32.37 330.79 -8.07 -40.43 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.88 Total: 0.88 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -0.33 Total: 10.59 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.47 Total: -54.20 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.28 Total: -17.99 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.04 Total: 15.73 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.04 Total: -0.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.37 -8.07 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074188317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.343 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds