Wall clock time and date at job start Tue Mar 31 2020 13:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48502 * 109.47499 * 240.00047 * 3 2 1 5 5 H 1.48507 * 109.46928 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47472 * 119.99561 * 3 2 1 7 7 C 1.38814 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99618 * 160.12157 * 7 2 1 9 9 N 1.36927 * 120.00151 * 340.12359 * 7 2 1 10 10 C 1.47169 * 121.20799 * 336.34809 * 9 7 2 11 11 C 1.53234 * 108.70695 * 230.88641 * 10 9 7 12 12 O 1.43089 * 109.40857 * 308.36356 * 11 10 9 13 13 C 1.42673 * 113.87322 * 61.69126 * 12 11 10 14 14 H 1.09001 * 108.88298 * 55.59734 * 13 12 11 15 15 C 1.52487 * 110.68031 * 174.56662 * 13 12 11 16 16 C 1.53152 * 109.83198 * 61.57127 * 15 13 12 17 17 N 1.46982 * 108.46298 * 54.47629 * 16 15 13 18 18 C 1.34774 * 120.74212 * 125.38831 * 17 16 15 19 19 O 1.21627 * 120.00281 * 191.52532 * 18 17 16 20 20 C 1.47100 * 119.99746 * 11.52869 * 18 17 16 21 21 C 1.38381 * 127.99908 * 188.98454 * 20 18 17 22 22 C 1.37575 * 111.26491 * 180.02562 * 21 20 18 23 23 N 1.29559 * 117.94902 * 359.97438 * 22 21 20 24 24 S 1.56305 * 110.38011 * 359.69746 * 23 22 21 25 25 C 1.46805 * 118.51966 * 305.41919 * 17 16 15 26 26 C 1.47585 * 121.20453 * 156.33046 * 9 7 2 27 27 H 1.09001 * 110.28417 * 7.90946 * 26 9 7 28 28 H 0.97002 * 119.99961 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.59701 * 350.65099 * 10 9 7 30 30 H 1.08995 * 109.59811 * 111.12048 * 10 9 7 31 31 H 1.08995 * 109.48051 * 68.34321 * 11 10 9 32 32 H 1.09001 * 109.47811 * 188.37231 * 11 10 9 33 33 H 1.09002 * 109.40791 * 181.67721 * 15 13 12 34 34 H 1.09001 * 109.41179 * 301.45699 * 15 13 12 35 35 H 1.09000 * 109.64305 * 174.17392 * 16 15 13 36 36 H 1.09005 * 109.63356 * 294.78893 * 16 15 13 37 37 H 1.08006 * 124.36789 * 0.04087 * 21 20 18 38 38 H 1.08007 * 121.02708 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.52287 * 294.44359 * 25 17 16 40 40 H 1.09001 * 109.52500 * 174.24929 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0419 -1.2302 -0.3175 9 7 1.3867 -2.3525 0.4042 10 6 0.2194 -2.3133 1.2996 11 6 0.4654 -3.2712 2.4701 12 8 0.8410 -4.5553 1.9627 13 6 2.0493 -4.5455 1.2040 14 1 2.8455 -4.1190 1.8141 15 6 2.4516 -5.9636 0.8137 16 6 1.3640 -6.5891 -0.0647 17 7 1.1161 -5.6959 -1.2054 18 6 1.1981 -6.1545 -2.4700 19 8 1.1995 -5.3726 -3.4017 20 6 1.2857 -7.6009 -2.7236 21 6 1.5449 -8.2414 -3.9225 22 6 1.5471 -9.6084 -3.7676 23 7 1.3193 -10.0859 -2.5849 24 16 1.0918 -8.9246 -1.5637 25 6 0.7780 -4.2929 -0.9365 26 6 1.8607 -3.6766 -0.0432 27 1 2.8036 -3.5785 -0.5812 28 1 -0.4850 0.8401 -0.0004 29 1 0.0832 -1.3004 1.6786 30 1 -0.6710 -2.6246 0.7534 31 1 1.2659 -2.8800 3.0978 32 1 -0.4462 -3.3658 3.0602 33 1 3.3910 -5.9346 0.2615 34 1 2.5802 -6.5645 1.7140 35 1 1.6994 -7.5611 -0.4266 36 1 0.4481 -6.7066 0.5144 37 1 1.7228 -7.7337 -4.8591 38 1 1.7339 -10.2634 -4.6059 39 1 -0.1855 -4.2412 -0.4293 40 1 0.7257 -3.7441 -1.8768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074262676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:53 Heat of formation + Delta-G solvation = -8.372452 kcal Electronic energy + Delta-G solvation = -26066.464716 eV Core-core repulsion = 22394.793842 eV Total energy + Delta-G solvation = -3671.670874 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62959 -40.41966 -39.66643 -37.27011 -36.45067 -33.72500 -33.17156 -32.53962 -31.05473 -29.35605 -27.57126 -25.87386 -25.65594 -24.49463 -23.08957 -22.72662 -20.68791 -20.01370 -19.48927 -18.85456 -17.75360 -17.37047 -17.14644 -16.98478 -16.71933 -16.24496 -16.02713 -15.73810 -15.47997 -15.18087 -14.91553 -14.79378 -14.40412 -14.26591 -13.96132 -13.82580 -13.53958 -13.09804 -12.86365 -12.66983 -12.47878 -12.46780 -12.29887 -12.17304 -11.86287 -11.83149 -11.46006 -11.24413 -11.04276 -10.79290 -10.77009 -10.49570 -9.81665 -9.71176 -8.74603 -7.92825 -5.36008 -0.77643 0.20744 0.86703 1.22475 1.46273 1.46844 1.54284 1.75410 1.94601 2.47067 2.88442 3.20793 3.27583 3.43176 3.78747 3.84851 4.00285 4.08236 4.09769 4.12677 4.23206 4.37579 4.44785 4.54822 4.60502 4.70727 4.72511 4.81861 4.88909 4.90001 4.95469 5.02197 5.19355 5.28370 5.34924 5.53396 5.56096 5.62175 6.23558 6.25053 6.36034 6.89277 7.04722 7.72207 8.24838 9.12066 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.003786 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.882131 B = 7393.992489 C = 8194.958703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.141 3.859 11 C 0.053 3.947 12 O -0.380 6.380 13 C 0.086 3.914 14 H 0.056 0.944 15 C -0.114 4.114 16 C 0.109 3.891 17 N -0.600 5.600 18 C 0.588 3.412 19 O -0.573 6.573 20 C -0.297 4.297 21 C -0.104 4.104 22 C 0.067 3.933 23 N -0.559 5.559 24 S 0.474 5.526 25 C 0.127 3.873 26 C 0.130 3.870 27 H 0.064 0.936 28 H 0.252 0.748 29 H 0.069 0.931 30 H 0.004 0.996 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.182 0.818 38 H 0.213 0.787 39 H 0.062 0.938 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -19.888 1.607 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.240 4.240 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.398 4.398 8 H 0.085 0.915 9 N -0.324 5.324 10 C 0.016 3.984 11 C -0.025 4.025 12 O -0.299 6.299 13 C 0.027 3.973 14 H 0.074 0.926 15 C -0.153 4.153 16 C -0.016 4.016 17 N -0.333 5.333 18 C 0.377 3.623 19 O -0.453 6.453 20 C -0.430 4.430 21 C -0.141 4.141 22 C -0.125 4.125 23 N -0.387 5.387 24 S 0.631 5.369 25 C 0.002 3.998 26 C 0.022 3.978 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.199 0.801 38 H 0.229 0.771 39 H 0.080 0.920 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.026 -20.712 2.965 21.140 hybrid contribution 0.457 2.583 -2.264 3.465 sum 3.483 -18.128 0.701 18.473 Atomic orbital electron populations 1.70183 1.06527 1.26152 1.54536 1.25676 0.95979 1.01295 1.01001 0.85362 0.77651 0.79264 0.78287 1.20667 1.21908 1.20027 1.19433 0.93926 0.86094 1.40327 0.91521 1.44552 1.34539 1.00628 1.52698 1.21364 0.87861 0.99079 0.90116 1.23168 1.00456 0.83501 0.95367 1.87728 1.42250 1.29872 1.70059 1.22207 0.87210 0.96343 0.91589 0.92610 1.21858 0.98267 0.93682 1.01463 1.22242 1.01248 0.91410 0.86686 1.48109 1.68271 1.11328 1.05565 1.17266 0.76147 0.86261 0.82675 1.90801 1.52225 1.58065 1.44234 1.26730 1.15182 0.98488 1.02628 1.22400 0.98570 0.93924 0.99189 1.22564 1.00911 0.93542 0.95441 1.72149 1.22382 1.35175 1.09030 1.81714 1.57134 0.84887 1.13166 1.21876 0.99286 0.79391 0.99240 1.21757 0.95666 0.86132 0.94239 0.91772 0.93888 0.91295 0.97791 0.93504 0.87167 0.89017 0.85958 0.89205 0.88324 0.80126 0.77089 0.92005 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 11.15 21.65 0.24 -53.65 16 2 C -0.04 -2.39 4.90 84.86 0.42 -1.97 16 3 Si 0.97 44.47 29.60 68.60 2.03 46.50 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.27 -14.59 9.69 84.04 0.81 -13.77 16 8 H 0.07 3.58 7.91 -2.91 -0.02 3.56 16 9 N -0.60 -29.33 2.72 -672.47 -1.83 -31.16 16 10 C 0.14 6.50 4.98 86.33 0.43 6.93 16 11 C 0.05 1.85 6.98 72.06 0.50 2.35 16 12 O -0.38 -12.37 9.62 -148.98 -1.43 -13.81 16 13 C 0.09 2.70 2.71 30.48 0.08 2.78 16 14 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 15 C -0.11 -2.47 5.82 30.47 0.18 -2.29 16 16 C 0.11 2.43 5.50 86.34 0.47 2.90 16 17 N -0.60 -19.14 2.96 -823.19 -2.44 -21.58 16 18 C 0.59 19.75 7.64 86.57 0.66 20.41 16 19 O -0.57 -24.46 16.44 -4.12 -0.07 -24.53 16 20 C -0.30 -7.35 6.43 24.63 0.16 -7.19 16 21 C -0.10 -2.11 10.41 22.15 0.23 -1.88 16 22 C 0.07 1.10 11.14 84.87 0.95 2.05 16 23 N -0.56 -10.90 11.29 -85.47 -0.96 -11.86 16 24 S 0.47 8.68 19.20 -56.49 -1.08 7.59 16 25 C 0.13 5.14 5.64 86.42 0.49 5.63 16 26 C 0.13 5.27 3.02 44.94 0.14 5.40 16 27 H 0.06 2.73 7.99 -2.39 -0.02 2.71 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.07 3.57 6.03 -2.39 -0.01 3.56 16 30 H 0.00 0.20 7.18 -2.39 -0.02 0.18 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.60 3.30 -22.56 -0.07 1.53 16 36 H 0.10 2.08 7.96 -2.38 -0.02 2.07 16 37 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.06 2.64 6.59 -2.39 -0.02 2.63 16 40 H 0.05 2.41 7.02 -2.39 -0.02 2.39 16 Total: -1.00 -70.94 328.26 0.98 -69.96 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.01 Total: 11.18 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 5.52 Total: 21.35 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -4.99 Total: -118.25 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.50 Total: -38.33 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 8.68 SS G_CDS: -1.08 Total: 7.59 kcal Total: -70.94 0.98 -69.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074262676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.592 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds