Wall clock time and date at job start Tue Mar 31 2020 14:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21301 * 120.00487 * 2 1 4 4 C 1.46792 * 120.00127 * 179.97438 * 2 1 3 5 5 C 1.40022 * 120.20994 * 0.02681 * 4 2 1 6 6 C 1.37785 * 119.86057 * 179.97438 * 5 4 2 7 7 Cl 1.73598 * 119.84212 * 179.97438 * 6 5 4 8 8 C 1.38721 * 120.31528 * 359.97422 * 6 5 4 9 9 C 1.50701 * 119.77825 * 180.02562 * 8 6 5 10 10 C 1.38045 * 120.44082 * 359.79094 * 8 6 5 11 11 C 1.38683 * 120.12770 * 0.46619 * 10 8 6 12 12 O 1.35625 * 120.16206 * 179.79126 * 11 10 8 13 13 C 1.42904 * 116.99579 * 2.80157 * 12 11 10 14 14 H 1.09000 * 110.63823 * 33.42991 * 13 12 11 15 15 C 1.55148 * 110.71778 * 156.57401 * 13 12 11 16 16 C 1.54910 * 101.58306 * 153.86828 * 15 13 12 17 17 N 1.47429 * 104.82980 * 322.98808 * 16 15 13 18 18 C 1.36928 * 125.64963 * 204.09347 * 17 16 15 19 19 H 1.08005 * 120.00057 * 163.71221 * 18 17 16 20 20 C 1.38811 * 120.00290 * 343.71613 * 18 17 16 21 21 N 1.31613 * 119.99639 * 331.62610 * 20 18 17 22 22 Si 1.86795 * 120.00202 * 151.90374 * 20 18 17 23 23 H 1.48503 * 109.47037 * 179.72306 * 22 20 18 24 24 H 1.48494 * 109.47492 * 299.72250 * 22 20 18 25 25 H 1.48506 * 109.47233 * 59.72659 * 22 20 18 26 26 C 1.47025 * 108.69863 * 24.35820 * 17 16 15 27 27 H 1.08999 * 109.47149 * 270.00588 * 1 2 3 28 28 H 1.09004 * 109.46946 * 30.00574 * 1 2 3 29 29 H 1.08998 * 109.47332 * 149.99568 * 1 2 3 30 30 H 1.07998 * 120.07189 * 359.95142 * 5 4 2 31 31 H 1.08999 * 109.47018 * 90.00469 * 9 8 6 32 32 H 1.09005 * 109.46768 * 209.99581 * 9 8 6 33 33 H 1.08991 * 109.47071 * 329.99762 * 9 8 6 34 34 H 1.08003 * 119.94242 * 180.25870 * 10 8 6 35 35 H 1.09003 * 111.00951 * 35.78833 * 15 13 12 36 36 H 1.09000 * 111.00618 * 271.93935 * 15 13 12 37 37 H 1.09005 * 110.36394 * 204.15500 * 16 15 13 38 38 H 1.08988 * 110.46465 * 81.87103 * 16 15 13 39 39 H 0.97009 * 120.00336 * 355.00690 * 21 20 18 40 40 H 1.09002 * 109.88341 * 118.13190 * 26 17 16 41 41 H 1.09006 * 109.88173 * 239.29382 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 1.5453 -2.4864 0.0005 6 6 2.2415 -3.6755 0.0005 7 17 1.3786 -5.1818 0.0012 8 6 3.6287 -3.6746 0.0000 9 6 4.3780 -4.9821 -0.0005 10 6 4.3274 -2.4840 -0.0048 11 6 3.6452 -1.2766 0.0005 12 8 4.3310 -0.1065 0.0000 13 6 5.7559 -0.1897 -0.0684 14 1 6.0623 -1.0466 -0.6684 15 6 6.3556 1.1225 -0.6389 16 6 7.7734 1.1137 -0.0147 17 7 7.5866 0.5587 1.3383 18 6 8.4124 0.7722 2.4095 19 1 8.0685 0.5508 3.4091 20 6 9.6916 1.2732 2.2107 21 7 10.3237 1.0343 1.0814 22 14 10.5188 2.2800 3.5492 23 1 11.8724 2.6890 3.0958 24 1 9.7054 3.4895 3.8330 25 1 10.6362 1.4618 4.7829 26 6 6.3702 -0.2670 1.3453 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 0.4653 -2.4918 0.0009 31 1 4.5583 -5.2971 -1.0283 32 1 5.3311 -4.8549 0.5129 33 1 3.7867 -5.7399 0.5133 34 1 5.4074 -2.4928 -0.0094 35 1 5.7868 1.9900 -0.3042 36 1 6.4077 1.0877 -1.7271 37 1 8.1690 2.1278 0.0425 38 1 8.4417 0.4787 -0.5961 39 1 9.9266 0.4488 0.4177 40 1 6.6243 -1.2995 1.5852 41 1 5.6620 0.1222 2.0769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229362804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:33 Heat of formation + Delta-G solvation = -51.029308 kcal Electronic energy + Delta-G solvation = -25056.635996 eV Core-core repulsion = 21348.778925 eV Total energy + Delta-G solvation = -3707.857071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.91213 -40.19657 -39.39808 -38.25497 -37.17558 -34.65426 -34.20443 -31.56252 -30.98930 -30.71989 -29.52651 -28.07766 -26.43765 -24.19174 -23.58574 -22.31593 -21.91844 -21.02386 -19.70821 -19.04661 -17.84021 -17.63900 -16.96237 -16.43315 -16.21450 -15.85641 -15.65528 -15.56266 -15.40906 -15.25159 -15.17861 -14.82114 -14.59223 -14.12306 -13.60762 -13.46692 -13.31122 -13.11268 -13.01166 -12.91764 -12.78633 -12.71748 -12.57647 -12.49991 -12.37814 -11.93214 -11.90968 -11.73691 -11.69368 -11.51631 -10.69047 -10.60064 -10.11637 -9.29316 -9.13704 -8.42406 -5.43088 -0.51763 0.05321 1.06529 1.31498 1.54934 1.63081 1.82333 1.88423 2.46046 2.58703 3.02828 3.09911 3.33017 3.40869 3.51924 3.63477 3.67925 3.74614 3.85152 4.12304 4.19530 4.27078 4.34834 4.42355 4.49056 4.51535 4.65272 4.66637 4.67505 4.73274 4.76070 4.78125 4.90022 4.92675 5.08097 5.12667 5.16948 5.25129 5.39830 5.56539 6.17751 6.22997 6.62501 6.78745 7.59530 8.15422 8.91142 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.003298 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.387725 B = 8486.850440 C = 9552.329024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.387 3.613 3 O -0.491 6.491 4 C -0.224 4.224 5 C -0.006 4.006 6 C -0.098 4.098 7 Cl -0.049 7.049 8 C 0.001 3.999 9 C -0.128 4.128 10 C -0.225 4.225 11 C 0.172 3.828 12 O -0.285 6.285 13 C 0.079 3.921 14 H 0.103 0.897 15 C -0.113 4.113 16 C 0.149 3.851 17 N -0.622 5.622 18 C -0.357 4.357 19 H 0.057 0.943 20 C -0.070 4.070 21 N -0.938 5.938 22 Si 1.117 2.883 23 H -0.286 1.286 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.122 3.878 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.185 0.815 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.031 0.969 38 H 0.024 0.976 39 H 0.258 0.742 40 H 0.031 0.969 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.233 -12.795 -5.691 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.268 3.732 3 O -0.369 6.369 4 C -0.226 4.226 5 C -0.024 4.024 6 C -0.124 4.124 7 Cl -0.020 7.020 8 C 0.000 4.000 9 C -0.184 4.184 10 C -0.244 4.244 11 C 0.124 3.876 12 O -0.196 6.196 13 C 0.023 3.977 14 H 0.121 0.879 15 C -0.151 4.151 16 C 0.024 3.976 17 N -0.350 5.350 18 C -0.485 4.485 19 H 0.075 0.925 20 C -0.266 4.266 21 N -0.579 5.579 22 Si 0.940 3.060 23 H -0.212 1.212 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.004 4.004 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.134 0.866 30 H 0.202 0.798 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -20.668 -11.297 -5.217 24.125 hybrid contribution -0.750 -1.105 -0.219 1.354 sum -21.418 -12.403 -5.436 25.340 Atomic orbital electron populations 1.22263 0.89621 1.06437 1.06312 1.22905 0.93583 0.86354 0.70391 1.90635 1.73251 1.35241 1.37779 1.20135 0.90112 0.96824 1.15504 1.21442 1.01870 0.87566 0.91562 1.20593 0.91632 0.88277 1.11947 1.98359 1.75814 1.30621 1.97176 1.20014 0.92235 0.96158 0.91581 1.21088 1.00435 0.92373 1.04509 1.21237 1.01205 0.90923 1.11053 1.19813 0.91907 0.85544 0.90297 1.86352 1.19635 1.27957 1.85664 1.23493 0.77279 1.00563 0.96399 0.87898 1.22818 0.94872 0.96159 1.01224 1.21488 0.94011 0.96675 0.85456 1.44664 1.26623 1.55234 1.08494 1.19973 0.96347 1.45774 0.86418 0.92516 1.27191 0.93470 1.01994 1.03985 1.70912 1.37953 1.38135 1.10941 0.82845 0.74937 0.75543 0.72666 1.21153 1.20955 1.19831 1.21747 0.88989 0.94210 0.95430 0.86688 0.89086 0.86649 0.79753 0.88458 0.90503 0.89273 0.84148 0.91067 0.87528 0.95090 0.95835 0.93160 0.95103 0.96208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 9.75 71.23 0.69 -1.73 16 2 C 0.39 9.72 7.22 27.92 0.20 9.93 16 3 O -0.49 -17.62 15.91 17.86 0.28 -17.33 16 4 C -0.22 -5.50 5.88 -20.07 -0.12 -5.62 16 5 C -0.01 -0.10 9.13 22.60 0.21 0.10 16 6 C -0.10 -1.77 6.30 22.28 0.14 -1.63 16 7 Cl -0.05 -0.71 27.25 -2.72 -0.07 -0.78 16 8 C 0.00 0.02 5.89 -19.79 -0.12 -0.09 16 9 C -0.13 -2.04 9.60 71.24 0.68 -1.35 16 10 C -0.23 -5.88 8.57 22.33 0.19 -5.69 16 11 C 0.17 5.20 6.70 22.91 0.15 5.35 16 12 O -0.29 -10.47 7.94 -68.42 -0.54 -11.01 16 13 C 0.08 2.93 2.75 31.78 0.09 3.01 16 14 H 0.10 3.32 6.14 -2.39 -0.01 3.30 16 15 C -0.11 -4.34 6.81 31.98 0.22 -4.12 16 16 C 0.15 7.20 5.29 86.85 0.46 7.66 16 17 N -0.62 -33.37 3.30 -691.97 -2.28 -35.65 16 18 C -0.36 -21.12 10.02 84.03 0.84 -20.28 16 19 H 0.06 3.36 7.97 -2.91 -0.02 3.34 16 20 C -0.07 -4.08 5.08 84.86 0.43 -3.65 16 21 N -0.94 -57.74 12.95 21.65 0.28 -57.46 16 22 Si 1.12 52.11 30.00 68.60 2.06 54.17 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 C 0.12 5.48 6.86 86.73 0.60 6.08 16 27 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.12 0.70 6.46 -2.39 -0.02 0.69 16 30 H 0.19 1.62 6.36 -2.91 -0.02 1.60 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.26 8.08 -2.38 -0.02 1.24 16 33 H 0.09 1.24 6.87 -2.39 -0.02 1.22 16 34 H 0.14 3.75 5.71 -2.91 -0.02 3.73 16 35 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.03 1.64 7.93 -2.38 -0.02 1.62 16 38 H 0.02 1.18 6.80 -2.39 -0.02 1.16 16 39 H 0.26 15.94 6.01 -92.70 -0.56 15.39 16 40 H 0.03 1.36 7.94 -2.39 -0.02 1.34 16 41 H 0.02 0.96 8.06 -2.38 -0.02 0.94 16 Total: -1.00 -76.13 349.56 5.66 -70.46 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.27 Total: 9.63 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.67 Total: -12.03 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -2.00 Total: -93.11 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.26 Total: -28.34 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.06 Total: 54.17 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.07 Total: -0.78 kcal Total: -76.13 5.66 -70.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229362804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.434 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds