Wall clock time and date at job start Tue Mar 31 2020 15:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30406 * 126.18163 * 2 1 4 4 N 1.28667 * 109.52994 * 180.02562 * 3 2 1 5 5 C 1.31291 * 109.23926 * 359.97438 * 4 3 2 6 6 C 1.47724 * 126.38128 * 179.97438 * 5 4 3 7 7 C 1.39702 * 120.01675 * 179.76179 * 6 5 4 8 8 C 1.37656 * 119.98285 * 179.71990 * 7 6 5 9 9 C 1.39553 * 120.01624 * 0.58398 * 8 7 6 10 10 C 1.48174 * 119.98335 * 179.72014 * 9 8 7 11 11 C 1.39490 * 119.65521 * 359.70018 * 10 9 8 12 12 C 1.38196 * 119.14345 * 179.75050 * 11 10 9 13 13 C 1.39448 * 118.45808 * 0.51502 * 12 11 10 14 14 O 1.35698 * 120.38032 * 179.70357 * 13 12 11 15 15 C 1.34804 * 117.00505 * 354.54170 * 14 13 12 16 16 H 1.08000 * 119.99618 * 5.05910 * 15 14 13 17 17 C 1.38651 * 120.00463 * 185.05770 * 15 14 13 18 18 N 1.31556 * 119.99806 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00191 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47117 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46979 * 120.00071 * 19 17 15 22 22 H 1.48499 * 109.47238 * 239.99851 * 19 17 15 23 23 C 1.38992 * 119.23318 * 359.72989 * 13 12 11 24 24 N 1.31634 * 120.79208 * 0.02562 * 23 13 12 25 25 C 1.39550 * 120.03370 * 359.69031 * 9 8 7 26 26 C 1.37658 * 120.01838 * 0.02562 * 25 9 8 27 27 O 1.34407 * 126.18239 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46831 * 269.96054 * 1 2 3 29 29 H 1.09001 * 109.47195 * 29.95610 * 1 2 3 30 30 H 1.08998 * 109.47338 * 149.95880 * 1 2 3 31 31 H 1.07998 * 120.00606 * 0.02562 * 7 6 5 32 32 H 1.08001 * 119.99226 * 180.32174 * 8 7 6 33 33 H 1.08002 * 120.42709 * 0.02562 * 11 10 9 34 34 H 1.07998 * 120.76907 * 180.24212 * 12 11 10 35 35 H 0.96994 * 120.00016 * 180.02562 * 18 17 15 36 36 H 1.07996 * 119.60113 * 179.97438 * 23 13 12 37 37 H 1.08006 * 119.99109 * 180.02562 * 25 9 8 38 38 H 1.07999 * 120.00899 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0526 0.0000 4 7 3.5096 0.6839 -0.0005 5 6 3.5688 -0.6277 -0.0004 6 6 4.7965 -1.4494 -0.0014 7 6 4.7045 -2.8433 0.0040 8 6 5.8489 -3.6083 -0.0027 9 6 7.1008 -2.9917 -0.0026 10 6 8.3322 -3.8159 -0.0037 11 6 8.2315 -5.2071 0.0016 12 6 9.3868 -5.9655 -0.0046 13 6 10.6151 -5.3053 -0.0050 14 8 11.7738 -6.0116 -0.0050 15 6 11.6742 -7.3510 0.1096 16 1 10.7022 -7.8218 0.1139 17 6 12.8195 -8.1243 0.2222 18 7 14.0035 -7.5508 0.2175 19 14 12.6815 -9.9803 0.3818 20 1 11.2497 -10.3738 0.3613 21 1 13.3887 -10.6286 -0.7518 22 1 13.2964 -10.4142 1.6620 23 6 10.6387 -3.9156 -0.0049 24 7 9.5196 -3.2226 -0.0039 25 6 7.1936 -1.5993 -0.0022 26 6 6.0501 -0.8329 -0.0014 27 8 2.3005 -1.0849 -0.0005 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 3.7357 -3.3206 0.0085 32 1 5.7779 -4.6860 -0.0038 33 1 7.2632 -5.6854 0.0060 34 1 9.3394 -7.0445 -0.0047 35 1 14.8047 -8.0917 0.2958 36 1 11.5867 -3.3982 -0.0048 37 1 8.1628 -1.1228 -0.0026 38 1 6.1220 0.2447 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239016737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:44 Heat of formation + Delta-G solvation = 71.081916 kcal Electronic energy + Delta-G solvation = -24315.666362 eV Core-core repulsion = 20511.996936 eV Total energy + Delta-G solvation = -3803.669425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.30612 -40.01357 -38.94180 -37.26620 -36.35463 -33.77538 -32.71190 -32.03668 -31.62553 -30.88018 -29.26584 -27.62620 -25.83031 -24.42408 -23.67986 -22.83226 -22.45419 -21.53670 -20.95298 -18.34926 -18.04644 -17.62075 -17.42747 -16.50216 -16.25222 -15.74418 -15.05086 -14.76378 -14.33995 -14.29839 -14.26539 -14.03068 -13.79607 -13.46956 -13.39647 -13.19990 -13.18015 -12.61809 -12.58948 -12.26701 -12.17983 -12.00595 -11.95489 -11.40355 -11.25730 -11.16802 -11.00753 -10.65388 -10.30527 -9.98339 -9.27359 -9.13336 -9.05735 -8.94294 -8.67904 -7.33405 -6.77519 -4.32103 0.22128 1.27995 1.37720 1.89759 1.97051 2.03585 2.47723 2.95966 2.96972 3.03032 3.55649 3.70688 3.74338 4.10524 4.49544 4.50332 4.57887 4.82528 4.83452 4.84858 4.87640 4.97721 4.99471 5.14570 5.18541 5.30043 5.33122 5.42906 5.47278 5.65148 5.67690 5.82784 5.92856 6.01358 6.22692 6.31194 6.40937 6.53844 6.73631 6.80573 6.87188 7.03676 7.29173 7.64914 8.08667 8.57216 8.66513 9.29082 10.38119 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.039520 B = 0.001961 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.328626 B =14274.265712 C =14961.616953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.150 3.850 3 N -0.286 5.286 4 N -0.286 5.286 5 C 0.226 3.774 6 C -0.058 4.058 7 C -0.076 4.076 8 C -0.129 4.129 9 C 0.035 3.965 10 C 0.021 3.979 11 C -0.091 4.091 12 C -0.206 4.206 13 C 0.110 3.890 14 O -0.153 6.153 15 C -0.393 4.393 16 H 0.097 0.903 17 C 0.043 3.957 18 N -0.845 5.845 19 Si 0.947 3.053 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.272 1.272 23 C 0.037 3.963 24 N -0.426 5.426 25 C -0.106 4.106 26 C -0.060 4.060 27 O -0.223 6.223 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.276 0.724 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.139 6.764 -0.224 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.060 4.060 3 N -0.134 5.134 4 N -0.132 5.132 5 C 0.020 3.980 6 C -0.060 4.060 7 C -0.095 4.095 8 C -0.148 4.148 9 C 0.034 3.966 10 C -0.112 4.112 11 C -0.111 4.111 12 C -0.231 4.231 13 C 0.051 3.949 14 O -0.052 6.052 15 C -0.468 4.468 16 H 0.115 0.885 17 C -0.164 4.164 18 N -0.477 5.477 19 Si 0.771 3.229 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.128 4.128 24 N -0.135 5.135 25 C -0.125 4.125 26 C -0.079 4.079 27 O -0.103 6.103 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.086 0.914 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.251 8.886 -0.226 22.116 hybrid contribution -0.506 -3.172 0.078 3.213 sum -20.757 5.714 -0.148 21.529 Atomic orbital electron populations 1.20332 0.80205 1.05646 1.05176 1.27978 0.97752 0.79590 1.00658 1.74376 0.96229 1.25639 1.17108 1.74754 1.11696 1.08374 1.18423 1.25620 0.83369 0.90425 0.98632 1.17189 0.86474 0.91413 1.10923 1.21001 0.99039 0.91616 0.97890 1.21077 0.90871 1.00316 1.02521 1.18792 0.91303 0.92875 0.93640 1.18990 0.90529 0.90104 1.11608 1.21717 0.98395 0.93578 0.97409 1.21460 0.91680 1.01140 1.08866 1.20581 0.87181 0.93004 0.94099 1.83944 1.25308 1.20816 1.75100 1.21520 0.95191 0.78090 1.52034 0.88517 1.25426 0.94058 1.01155 0.95802 1.70034 0.97809 1.36922 1.42907 0.85552 0.79180 0.79579 0.78627 1.18837 1.19782 1.19770 1.21769 0.96286 0.88417 1.06365 1.67306 0.97469 1.39745 1.08976 1.21246 0.98767 0.92782 0.99684 1.21085 0.89887 1.00707 0.96269 1.84821 1.17291 1.38003 1.70215 0.88382 0.87580 0.88921 0.85368 0.84835 0.85908 0.84319 0.91397 0.82752 0.83721 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.15 1.55 8.47 -12.88 -0.11 1.44 16 3 N -0.29 -3.84 12.22 32.58 0.40 -3.44 16 4 N -0.29 -4.19 11.91 32.05 0.38 -3.81 16 5 C 0.23 3.02 7.98 -13.91 -0.11 2.91 16 6 C -0.06 -0.74 5.88 -104.93 -0.62 -1.36 16 7 C -0.08 -0.88 9.71 -39.25 -0.38 -1.26 16 8 C -0.13 -1.60 9.40 -39.30 -0.37 -1.97 16 9 C 0.04 0.53 5.88 -104.84 -0.62 -0.09 16 10 C 0.02 0.36 6.73 -82.93 -0.56 -0.20 16 11 C -0.09 -1.54 9.45 -39.13 -0.37 -1.91 16 12 C -0.21 -4.04 9.25 -39.15 -0.36 -4.40 16 13 C 0.11 2.44 6.67 -38.85 -0.26 2.18 16 14 O -0.15 -3.96 9.76 0.28 0.00 -3.96 16 15 C -0.39 -9.97 9.50 30.89 0.29 -9.67 16 16 H 0.10 2.24 5.25 -52.49 -0.28 1.96 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.84 -22.80 13.67 55.48 0.76 -22.04 16 19 Si 0.95 18.71 29.55 -169.99 -5.02 13.68 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 C 0.04 0.75 11.14 -17.36 -0.19 0.56 16 24 N -0.43 -8.12 9.40 -9.62 -0.09 -8.21 16 25 C -0.11 -1.49 9.55 -39.30 -0.38 -1.87 16 26 C -0.06 -0.78 9.68 -39.25 -0.38 -1.16 16 27 O -0.22 -2.61 10.66 3.99 0.04 -2.57 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.13 1.20 7.92 -52.49 -0.42 0.79 16 32 H 0.13 1.40 6.15 -52.49 -0.32 1.08 16 33 H 0.12 1.64 6.17 -52.49 -0.32 1.32 16 34 H 0.14 2.63 5.75 -52.49 -0.30 2.33 16 35 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.16 2.91 8.06 -52.49 -0.42 2.48 16 37 H 0.15 2.03 7.52 -52.48 -0.39 1.64 16 38 H 0.14 1.63 7.85 -52.49 -0.41 1.22 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -30.62 341.19 -5.79 -36.40 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.27 Total: 4.48 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -4.13 Total: -15.69 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 1.45 Total: -37.50 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: 0.05 Total: -6.53 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.62 -5.79 -36.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239016737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.486 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds