Wall clock time and date at job start Tue Mar 31 2020 14:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38074 * 119.56286 * 2 1 4 4 C 1.39669 * 119.02458 * 179.97438 * 3 2 1 5 5 C 1.48514 * 120.89929 * 180.02562 * 4 3 2 6 6 N 1.30813 * 126.30276 * 359.69067 * 5 4 3 7 7 O 1.21274 * 110.36227 * 179.80035 * 6 5 4 8 8 C 1.34248 * 109.90189 * 0.46870 * 7 6 5 9 9 C 1.47606 * 126.57813 * 179.75026 * 8 7 6 10 10 C 1.39602 * 120.18905 * 179.97438 * 9 8 7 11 11 C 1.37879 * 119.92095 * 179.97438 * 10 9 8 12 12 C 1.38532 * 120.31311 * 0.02562 * 11 10 9 13 13 C 1.38074 * 120.38897 * 359.97438 * 12 11 10 14 14 C 1.38792 * 120.06931 * 359.67624 * 13 12 11 15 15 O 1.35574 * 120.15666 * 180.29737 * 14 13 12 16 16 C 1.34803 * 116.99610 * 354.40451 * 15 14 13 17 17 H 1.08003 * 120.00400 * 5.05708 * 16 15 14 18 18 C 1.38688 * 119.99740 * 185.06324 * 16 15 14 19 19 N 1.31539 * 119.99908 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47043 * 60.00020 * 20 18 16 22 22 H 1.48498 * 109.46857 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46915 * 299.99913 * 20 18 16 24 24 N 1.32079 * 106.83645 * 359.70594 * 8 7 6 25 25 C 1.39714 * 118.20063 * 0.02562 * 4 3 2 26 26 C 1.38020 * 119.02754 * 359.97438 * 25 4 3 27 27 N 1.31872 * 119.56304 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47846 * 270.02571 * 1 2 3 29 29 H 1.09008 * 109.47239 * 30.02543 * 1 2 3 30 30 H 1.09009 * 109.47198 * 150.01991 * 1 2 3 31 31 H 1.08003 * 120.48555 * 359.97438 * 3 2 1 32 32 H 1.08010 * 120.03904 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.84269 * 180.02562 * 11 10 9 34 34 H 1.07994 * 119.81055 * 179.97438 * 12 11 10 35 35 H 1.07996 * 119.96146 * 179.97438 * 13 12 11 36 36 H 0.96995 * 119.99739 * 180.02562 * 19 18 16 37 37 H 1.07999 * 120.48348 * 180.02562 * 25 4 3 38 38 H 1.08001 * 119.56230 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1881 1.2010 0.0000 4 6 3.5848 1.1879 0.0005 5 6 4.3594 2.4550 0.0011 6 7 3.8639 3.6656 -0.0045 7 8 4.7562 4.4869 0.0018 8 6 5.9473 3.8675 0.0021 9 6 7.2745 4.5133 0.0035 10 6 8.4337 3.7355 0.0042 11 6 9.6707 4.3445 0.0050 12 6 9.7697 5.7263 0.0058 13 6 8.6316 6.5081 0.0051 14 6 7.3783 5.9118 -0.0030 15 8 6.2597 6.6778 -0.0097 16 6 6.4295 8.0098 0.1091 17 1 7.4250 8.4284 0.1216 18 6 5.3256 8.8427 0.2153 19 7 4.1132 8.3330 0.1996 20 14 5.5608 10.6885 0.3806 21 1 6.2858 11.2036 -0.8086 22 1 4.2347 11.3497 0.4773 23 1 6.3489 10.9793 1.6052 24 7 5.7035 2.5694 0.0017 25 6 4.2334 -0.0496 0.0005 26 6 3.4754 -1.2030 0.0005 27 7 2.1575 -1.1470 0.0005 28 1 -0.3635 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6489 2.1368 -0.0004 32 1 8.3617 2.6578 0.0040 33 1 10.5667 3.7415 0.0051 34 1 10.7427 6.1949 0.0068 35 1 8.7168 7.5847 0.0062 36 1 3.3412 8.9155 0.2735 37 1 5.3121 -0.1027 0.0013 38 1 3.9679 -2.1642 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323616970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:33 Heat of formation + Delta-G solvation = 84.899477 kcal Electronic energy + Delta-G solvation = -25498.207040 eV Core-core repulsion = 21695.136789 eV Total energy + Delta-G solvation = -3803.070251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.45620 -41.31501 -40.92381 -38.33956 -37.05324 -34.90089 -34.37638 -33.88329 -32.95384 -31.31861 -30.59548 -28.66278 -27.47893 -26.22504 -25.65032 -24.11179 -23.29729 -22.97154 -21.80565 -19.95250 -19.47788 -19.08152 -18.33451 -17.51376 -17.30868 -16.81236 -16.62174 -16.40713 -16.11646 -15.72562 -15.57679 -15.35643 -14.93345 -14.73841 -14.47460 -14.35326 -13.69172 -13.64021 -13.54126 -13.35472 -13.13521 -12.99170 -12.86704 -12.64413 -12.61241 -12.38563 -12.16556 -12.15144 -11.91862 -11.36034 -10.84444 -10.72054 -10.63107 -10.04951 -9.71997 -9.09883 -8.50142 -6.19333 -0.63005 -0.35083 -0.00935 0.64129 0.86350 1.36479 1.43025 1.47613 1.52795 1.79722 2.13529 2.22242 2.67792 2.78485 2.81157 3.10081 3.27097 3.27854 3.60403 3.84289 3.88959 4.01443 4.09671 4.18674 4.33093 4.42413 4.51181 4.53463 4.60897 4.66732 4.72932 4.74475 4.87010 4.98361 5.05167 5.10233 5.12423 5.13464 5.48249 5.53986 5.56159 5.65210 5.91376 6.07094 6.82091 6.90731 7.01960 7.62569 8.68929 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.003487 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.858121 B = 8028.534270 C =10073.048790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.127 3.873 3 C -0.154 4.154 4 C 0.016 3.984 5 C 0.198 3.802 6 N -0.406 5.406 7 O 0.078 5.922 8 C 0.257 3.743 9 C -0.153 4.153 10 C -0.013 4.013 11 C -0.192 4.192 12 C -0.027 4.027 13 C -0.244 4.244 14 C 0.149 3.851 15 O -0.200 6.200 16 C -0.419 4.419 17 H 0.116 0.884 18 C -0.015 4.015 19 N -0.902 5.902 20 Si 1.018 2.982 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.254 1.254 24 N -0.491 5.491 25 C -0.138 4.138 26 C 0.114 3.886 27 N -0.487 5.487 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.137 0.863 36 H 0.273 0.727 37 H 0.158 0.842 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -12.872 -0.095 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.010 4.010 3 C -0.176 4.176 4 C 0.006 3.994 5 C -0.073 4.073 6 N -0.118 5.118 7 O 0.022 5.978 8 C 0.044 3.956 9 C -0.157 4.157 10 C -0.032 4.032 11 C -0.210 4.210 12 C -0.045 4.045 13 C -0.263 4.263 14 C 0.094 3.906 15 O -0.102 6.102 16 C -0.495 4.495 17 H 0.133 0.867 18 C -0.215 4.215 19 N -0.537 5.537 20 Si 0.837 3.163 21 H -0.177 1.177 22 H -0.202 1.202 23 H -0.178 1.178 24 N -0.226 5.226 25 C -0.160 4.160 26 C -0.043 4.043 27 N -0.198 5.198 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.176 0.824 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.128 -13.846 -0.114 14.195 hybrid contribution 0.204 2.256 0.052 2.266 sum 3.332 -11.589 -0.062 12.059 Atomic orbital electron populations 1.20818 0.86011 1.04630 1.04382 1.21633 0.98740 0.86799 0.93784 1.22117 0.92817 1.00937 1.01697 1.17903 0.92451 0.88228 1.00811 1.24186 0.88257 0.93438 1.01422 1.74851 1.13859 1.00394 1.22720 1.85653 1.12817 1.33374 1.65945 1.26616 0.89955 0.86063 0.92979 1.16799 0.86454 0.89582 1.22881 1.21100 0.89663 0.99847 0.92600 1.21193 0.97143 0.94805 1.07873 1.21561 0.98230 0.93877 0.90860 1.21319 0.91235 1.01676 1.12116 1.19892 0.88500 0.90066 0.92185 1.83974 1.28642 1.20071 1.77525 1.21976 0.96084 0.78358 1.53043 0.86711 1.26659 0.93624 1.05918 0.95311 1.70234 0.98995 1.38378 1.46059 0.84650 0.78244 0.73236 0.80158 1.17741 1.20244 1.17813 1.72108 1.11812 1.13966 1.24759 1.22397 1.03107 0.90904 0.99565 1.23323 0.88600 0.99174 0.93192 1.67587 1.10959 1.29062 1.12203 0.88951 0.89659 0.89134 0.84775 0.83356 0.81476 0.81864 0.84559 0.91770 0.82430 0.77915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 10.17 71.23 0.72 -1.07 16 2 C 0.13 3.19 6.78 42.51 0.29 3.48 16 3 C -0.15 -4.65 9.41 22.58 0.21 -4.44 16 4 C 0.02 0.52 5.91 -19.83 -0.12 0.40 16 5 C 0.20 8.20 7.82 137.41 1.08 9.27 16 6 N -0.41 -19.61 11.93 -57.67 -0.69 -20.30 16 7 O 0.08 4.13 9.98 86.93 0.87 5.00 16 8 C 0.26 11.79 7.96 87.21 0.69 12.48 16 9 C -0.15 -6.41 5.89 -19.99 -0.12 -6.53 16 10 C -0.01 -0.40 9.70 22.51 0.22 -0.18 16 11 C -0.19 -4.82 10.03 22.25 0.22 -4.59 16 12 C -0.03 -0.72 10.03 22.30 0.22 -0.50 16 13 C -0.24 -9.11 9.16 22.36 0.20 -8.91 16 14 C 0.15 6.91 6.66 22.89 0.15 7.06 16 15 O -0.20 -11.29 8.20 -2.81 -0.02 -11.31 16 16 C -0.42 -22.71 9.49 67.93 0.64 -22.07 16 17 H 0.12 5.46 5.21 -2.91 -0.02 5.45 16 18 C -0.01 -0.79 5.49 84.84 0.47 -0.33 16 19 N -0.90 -54.03 13.67 21.62 0.30 -53.74 16 20 Si 1.02 40.54 29.55 68.60 2.03 42.56 16 21 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 22 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 24 N -0.49 -20.14 11.05 -302.27 -3.34 -23.48 16 25 C -0.14 -3.57 9.80 22.57 0.22 -3.35 16 26 C 0.11 2.40 11.17 84.63 0.95 3.35 16 27 N -0.49 -11.87 10.26 -184.11 -1.89 -13.75 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.37 8.08 -2.38 -0.02 1.35 16 30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.13 4.20 7.95 -2.91 -0.02 4.18 16 32 H 0.15 4.06 7.88 -2.91 -0.02 4.04 16 33 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.14 5.01 5.64 -2.91 -0.02 4.99 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.16 3.65 7.96 -2.91 -0.02 3.63 16 38 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -73.99 342.90 4.43 -69.55 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 1.12 Total: 21.38 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 6.06 Total: -15.91 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -5.62 Total: -111.27 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.84 Total: -6.32 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -73.99 4.43 -69.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323616970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.454 kcal (2) G-P(sol) polarization free energy of solvation -73.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds