Wall clock time and date at job start Tue Mar 31 2020 13:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47382 * 70.76850 * 3 2 1 5 5 N 1.46902 * 109.47114 * 181.12125 * 4 3 2 6 6 C 1.46896 * 111.00187 * 299.43063 * 5 4 3 7 7 C 1.50706 * 109.47156 * 294.04012 * 6 5 4 8 8 H 1.08001 * 119.99705 * 355.09669 * 7 6 5 9 9 C 1.37869 * 119.99627 * 175.09149 * 7 6 5 10 10 N 1.31517 * 120.00764 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99709 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47191 * 60.00061 * 11 9 7 13 13 H 1.48496 * 109.47381 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47246 * 300.00180 * 11 9 7 15 15 C 1.46895 * 110.99759 * 63.38547 * 5 4 3 16 16 C 1.50701 * 109.47518 * 66.04530 * 15 5 4 17 17 C 1.38263 * 119.99881 * 270.02573 * 16 15 5 18 18 C 1.38214 * 119.99961 * 179.97438 * 17 16 15 19 19 C 1.38256 * 119.99888 * 359.94927 * 18 17 16 20 20 C 1.38203 * 120.00153 * 0.07496 * 19 18 17 21 21 S 1.76205 * 120.00176 * 179.97438 * 20 19 18 22 22 N 1.65595 * 107.22109 * 269.95226 * 21 20 19 23 23 O 1.42102 * 106.40028 * 23.49513 * 21 20 19 24 24 O 1.42101 * 106.40353 * 156.41151 * 21 20 19 25 25 C 1.38207 * 120.00246 * 89.99425 * 16 15 5 26 26 H 1.09000 * 109.47127 * 310.76256 * 3 2 1 27 27 H 1.09005 * 109.47017 * 190.76940 * 3 2 1 28 28 H 1.09009 * 109.47014 * 61.12577 * 4 3 2 29 29 H 1.08997 * 109.47172 * 301.12753 * 4 3 2 30 30 H 1.09001 * 109.47019 * 54.04373 * 6 5 4 31 31 H 1.09003 * 109.46837 * 174.04438 * 6 5 4 32 32 H 0.96995 * 120.00181 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47533 * 306.04314 * 15 5 4 34 34 H 1.08994 * 109.47221 * 186.04281 * 15 5 4 35 35 H 1.07997 * 119.99653 * 359.97346 * 17 16 15 36 36 H 1.07997 * 119.99776 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.99576 * 180.02562 * 19 18 17 38 38 H 0.96994 * 120.00272 * 149.99272 * 22 21 20 39 39 H 0.97006 * 119.99470 * 330.00149 * 22 21 20 40 40 H 1.08000 * 120.00300 * 359.72924 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.4742 -1.3619 5 7 4.5871 -0.4992 -1.3530 6 6 5.1348 0.8398 -1.0981 7 6 4.7968 1.7488 -2.2517 8 1 4.3013 1.3513 -3.1252 9 6 5.1202 3.0877 -2.1919 10 7 5.7239 3.5717 -1.1285 11 14 4.7006 4.2146 -3.6215 12 1 3.2320 4.2096 -3.8413 13 1 5.1506 5.5954 -3.3120 14 1 5.3862 3.7343 -4.8481 15 6 5.0911 -1.4696 -0.3722 16 6 4.7115 -2.8629 -0.8032 17 6 3.5131 -3.4128 -0.3871 18 6 3.1647 -4.6905 -0.7828 19 6 4.0140 -5.4182 -1.5956 20 6 5.2121 -4.8687 -2.0111 21 16 6.2948 -5.7963 -3.0464 22 7 7.3127 -6.6463 -2.0547 23 8 5.4875 -6.7579 -3.7120 24 8 7.1018 -4.8498 -3.7335 25 6 5.5608 -3.5907 -1.6149 26 1 2.9716 -0.6702 0.7784 27 1 2.9709 1.0104 0.1920 28 1 2.7712 0.2080 -2.1380 29 1 2.7390 -1.4761 -1.5628 30 1 4.7028 1.2405 -0.1811 31 1 6.2177 0.7751 -0.9917 32 1 5.9510 4.5137 -1.0863 33 1 4.6544 -1.2597 0.6042 34 1 6.1764 -1.3920 -0.3090 35 1 2.8493 -2.8440 0.2471 36 1 2.2288 -5.1201 -0.4574 37 1 3.7415 -6.4163 -1.9051 38 1 7.6689 -7.5011 -2.3430 39 1 7.5527 -6.2893 -1.1852 40 1 6.4947 -3.1594 -1.9440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423076500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:59 Heat of formation + Delta-G solvation = -17.023906 kcal Electronic energy + Delta-G solvation = -24706.660090 eV Core-core repulsion = 21034.614061 eV Total energy + Delta-G solvation = -3672.046029 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.75051 -37.65236 -37.24750 -36.01363 -35.91729 -33.41484 -32.92587 -31.96163 -31.41601 -30.22059 -27.33878 -25.43757 -23.72815 -23.37376 -21.85067 -20.07240 -19.52173 -18.11098 -17.57612 -17.43266 -16.85468 -16.34583 -16.18596 -15.66103 -15.38554 -14.92418 -14.73510 -14.38613 -14.17658 -13.88540 -13.61866 -13.22523 -12.88883 -12.46657 -12.40287 -12.28990 -12.18720 -12.16261 -12.09431 -12.02868 -11.73577 -11.42572 -11.28205 -11.14125 -10.93363 -10.78805 -10.68410 -10.54509 -10.32684 -9.98241 -9.46839 -9.38609 -8.92457 -8.52459 -7.50403 -6.13046 -4.14831 0.26292 0.70859 1.20873 2.97379 3.00017 3.02796 3.30272 3.32661 3.34683 3.38646 3.64020 4.23469 4.32274 4.37874 4.70596 4.76421 4.89366 4.92925 5.14877 5.22686 5.23592 5.34813 5.39107 5.50802 5.64170 5.73307 5.76307 5.81358 5.95939 6.00238 6.14853 6.17587 6.40660 6.52832 6.73633 6.78209 7.05494 7.11810 7.65393 7.76707 7.88058 7.98199 8.34678 8.92798 9.50909 10.97095 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.003657 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.741014 B = 7654.136683 C = 9116.524266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.222 3.778 3 C -0.075 4.075 4 C 0.068 3.932 5 N -0.521 5.521 6 C 0.186 3.814 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.079 3.921 16 C -0.082 4.082 17 C -0.057 4.057 18 C -0.142 4.142 19 C -0.025 4.025 20 C -0.677 4.677 21 S 2.702 3.298 22 N -1.250 6.250 23 O -0.968 6.968 24 O -0.956 6.956 25 C -0.001 4.001 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.006 0.994 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.419 0.581 39 H 0.417 0.583 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -19.614 5.079 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.062 4.062 5 N -0.244 5.244 6 C 0.062 3.938 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.049 4.049 16 C -0.084 4.084 17 C -0.076 4.076 18 C -0.161 4.161 19 C -0.045 4.045 20 C -0.765 4.765 21 S 2.790 3.210 22 N -0.923 5.923 23 O -0.958 6.958 24 O -0.945 6.945 25 C -0.021 4.021 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.248 0.752 39 H 0.244 0.756 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.488 -19.475 3.620 19.815 hybrid contribution -0.134 1.123 1.046 1.540 sum 0.354 -18.353 4.666 18.940 Atomic orbital electron populations 1.81154 1.13143 1.09829 1.09481 1.29269 0.95262 0.92433 0.92560 1.20265 0.81577 1.06716 1.03159 1.22126 0.89140 1.00976 0.94000 1.62440 1.05134 1.10056 1.46733 1.19901 0.95473 0.81825 0.96594 1.21076 1.38905 0.92365 1.02698 0.91740 1.24931 0.95133 0.98128 0.96001 1.69918 1.41088 1.14414 1.28203 0.86600 0.78818 0.79528 0.82764 1.20276 1.21373 1.20049 1.21191 1.01363 0.88095 0.94232 1.20114 0.94369 0.96444 0.97473 1.21485 0.95171 0.94595 0.96363 1.21229 1.00193 0.95108 0.99593 1.20837 0.91456 0.99401 0.92814 1.30546 1.13654 1.09686 1.22615 1.01536 0.73353 0.73270 0.72797 1.53174 1.67544 1.36903 1.34720 1.93582 1.69182 1.61112 1.71902 1.93644 1.68102 1.62941 1.69819 1.20911 0.99537 0.90680 0.90986 0.88453 0.85677 0.88733 0.91760 0.97610 0.94953 0.92750 0.93773 0.89536 0.85481 0.85271 0.84517 0.75171 0.75616 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.97 18.54 42.15 0.78 -7.19 16 2 C 0.22 3.40 15.43 -20.76 -0.32 3.07 16 3 C -0.08 -1.04 4.95 -29.52 -0.15 -1.19 16 4 C 0.07 1.07 4.75 -3.82 -0.02 1.06 16 5 N -0.52 -9.13 4.69 -237.52 -1.11 -10.24 16 6 C 0.19 4.06 4.49 -4.98 -0.02 4.04 16 7 C -0.51 -12.90 8.40 -34.44 -0.29 -13.19 16 8 H 0.06 1.64 7.29 -52.49 -0.38 1.26 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -24.55 13.29 55.43 0.74 -23.81 16 11 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 15 C 0.08 1.08 4.93 -4.98 -0.02 1.06 16 16 C -0.08 -1.02 4.89 -104.62 -0.51 -1.53 16 17 C -0.06 -0.62 7.91 -39.58 -0.31 -0.93 16 18 C -0.14 -1.40 10.05 -39.58 -0.40 -1.80 16 19 C -0.03 -0.26 9.52 -39.59 -0.38 -0.64 16 20 C -0.68 -7.37 5.97 -39.58 -0.24 -7.60 16 21 S 2.70 27.79 6.28 -107.50 -0.68 27.12 16 22 N -1.25 -7.18 9.52 60.35 0.57 -6.61 16 23 O -0.97 -12.47 17.28 -57.17 -0.99 -13.45 16 24 O -0.96 -13.66 17.28 -57.17 -0.99 -14.65 16 25 C 0.00 -0.02 9.18 -39.58 -0.36 -0.38 16 26 H 0.10 1.07 5.72 -51.93 -0.30 0.78 16 27 H 0.13 1.98 6.35 -51.93 -0.33 1.65 16 28 H 0.09 1.72 6.94 -51.92 -0.36 1.36 16 29 H 0.06 0.92 5.93 -51.93 -0.31 0.61 16 30 H 0.01 0.14 6.04 -51.93 -0.31 -0.18 16 31 H 0.03 0.77 7.93 -51.93 -0.41 0.35 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.04 0.53 6.03 -51.93 -0.31 0.21 16 34 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 35 H 0.13 1.19 7.31 -52.49 -0.38 0.81 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.15 7.62 -52.49 -0.40 0.75 16 38 H 0.42 1.67 8.96 -34.47 -0.31 1.36 16 39 H 0.42 1.51 8.96 -34.46 -0.31 1.21 16 40 H 0.15 1.75 7.61 -52.49 -0.40 1.35 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -34.16 350.62 -9.01 -43.17 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.48 Total: 1.23 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -3.12 Total: -16.55 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.98 Total: -47.85 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.98 Total: -28.10 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 27.79 SS G_CDS: -0.68 Total: 27.12 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.16 -9.01 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423076500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.148 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds