Wall clock time and date at job start Tue Mar 31 2020 14:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 N 1.46497 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99991 * 180.02562 * 4 3 2 6 6 O 1.21588 * 120.00308 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99949 * 179.97438 * 5 4 3 8 8 N 1.40096 * 120.00243 * 359.97438 * 7 5 4 9 9 C 1.34778 * 120.00341 * 180.28019 * 8 7 5 10 10 O 1.21612 * 119.99727 * 359.71871 * 9 8 7 11 11 C 1.47421 * 119.99994 * 179.72597 * 9 8 7 12 12 C 1.39672 * 120.21909 * 359.97438 * 11 9 8 13 13 C 1.37804 * 119.94363 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.37880 * 359.97438 * 13 12 11 15 15 C 1.37914 * 120.43994 * 0.02578 * 14 13 12 16 16 C 1.39115 * 120.04469 * 359.67379 * 15 14 13 17 17 S 1.76201 * 120.18647 * 180.32139 * 16 15 14 18 18 C 1.76201 * 100.00134 * 6.85621 * 17 16 15 19 19 H 1.08000 * 119.99961 * 5.65174 * 18 17 16 20 20 C 1.38808 * 120.00125 * 185.65518 * 18 17 16 21 21 N 1.31553 * 119.99937 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47027 * 60.00193 * 22 20 18 24 24 H 1.48496 * 109.47009 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47473 * 300.00238 * 22 20 18 26 26 H 1.09000 * 109.47010 * 60.00395 * 1 2 3 27 27 H 1.09007 * 109.47130 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47299 * 299.99768 * 1 2 3 29 29 H 1.08998 * 109.47195 * 239.99488 * 2 1 3 30 30 H 1.09004 * 109.47422 * 119.99891 * 2 1 3 31 31 H 1.08998 * 109.47412 * 59.99621 * 3 2 1 32 32 H 1.09004 * 109.46792 * 300.00276 * 3 2 1 33 33 H 0.96997 * 120.00187 * 359.97438 * 4 3 2 34 34 H 0.97005 * 119.99866 * 180.02562 * 7 5 4 35 35 H 0.97006 * 120.00008 * 359.97438 * 8 7 5 36 36 H 1.08000 * 120.03077 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.81325 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.78131 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.97339 * 179.97438 * 15 14 13 40 40 H 0.96995 * 120.00039 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5709 3.6627 0.0002 7 7 5.5266 2.6097 -0.0003 8 7 6.2271 1.3965 -0.0002 9 6 7.5749 1.3965 0.0055 10 8 8.1829 2.4497 0.0054 11 6 8.3119 0.1198 0.0117 12 6 7.6182 -1.0925 0.0122 13 6 8.3129 -2.2826 0.0185 14 6 9.6995 -2.2851 0.0238 15 6 10.4004 -1.0973 0.0234 16 6 9.7173 0.1145 0.0107 17 16 10.6090 1.6341 0.0015 18 6 12.2506 1.0245 -0.1943 19 1 12.4191 -0.0295 -0.3591 20 6 13.3272 1.8988 -0.1366 21 7 13.1219 3.1825 0.0648 22 14 15.0674 1.2523 -0.3434 23 1 15.2007 0.6065 -1.6741 24 1 16.0294 2.3789 -0.2409 25 1 15.3558 0.2575 0.7206 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9900 0.6025 -0.0006 34 1 6.0115 3.4498 0.0004 35 1 5.7421 0.5564 0.0003 36 1 6.5382 -1.0972 0.0085 37 1 7.7743 -3.2187 0.0194 38 1 10.2342 -3.2234 0.0292 39 1 11.4803 -1.1081 0.0279 40 1 13.8742 3.7934 0.1055 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049279585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:05 Heat of formation + Delta-G solvation = -3.348427 kcal Electronic energy + Delta-G solvation = -23927.128913 eV Core-core repulsion = 20255.675897 eV Total energy + Delta-G solvation = -3671.453016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53452 -39.33783 -37.65248 -36.10659 -35.54271 -32.85083 -32.72326 -31.74014 -30.43178 -29.62676 -26.44635 -25.92713 -23.64171 -22.27050 -22.08909 -21.22148 -20.78639 -19.30077 -18.09223 -17.47710 -16.81286 -16.22797 -15.86628 -15.57071 -15.23109 -15.19110 -14.87559 -14.58081 -14.40648 -14.09791 -13.91982 -13.32813 -13.13270 -13.01465 -12.91398 -12.43659 -12.25286 -11.71379 -11.53022 -11.36684 -11.34452 -11.24459 -11.12774 -11.05642 -10.63609 -10.42072 -10.03332 -9.84859 -9.60928 -9.41650 -8.85523 -8.56475 -8.25156 -8.18183 -6.66671 -6.55227 -4.27232 1.33049 1.87672 1.94123 2.83321 2.92084 3.03113 3.08904 3.13704 3.30883 3.32459 3.97471 4.31542 4.43148 4.58305 4.65999 4.83846 4.86359 4.96514 5.06811 5.22414 5.23898 5.24246 5.39601 5.47704 5.61339 5.72966 5.73660 5.80160 5.95577 6.14304 6.22363 6.39170 6.51740 6.55364 6.69153 6.90739 7.00468 7.33474 7.45086 7.46589 7.70416 8.06453 8.27615 8.61675 8.90809 10.47953 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002842 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.614611 B = 9848.491843 C =11151.066052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.136 3.864 4 N -0.747 5.747 5 C 0.712 3.288 6 O -0.580 6.580 7 N -0.526 5.526 8 N -0.541 5.541 9 C 0.556 3.444 10 O -0.501 6.501 11 C -0.174 4.174 12 C -0.061 4.061 13 C -0.184 4.184 14 C -0.073 4.073 15 C -0.149 4.149 16 C -0.056 4.056 17 S 0.195 5.805 18 C -0.598 4.598 19 H 0.092 0.908 20 C 0.084 3.916 21 N -0.855 5.855 22 Si 0.921 3.079 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.269 1.269 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.392 0.608 34 H 0.444 0.556 35 H 0.412 0.588 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.021 -10.904 0.064 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.012 3.988 4 N -0.405 5.405 5 C 0.411 3.589 6 O -0.455 6.455 7 N -0.281 5.281 8 N -0.296 5.296 9 C 0.346 3.654 10 O -0.376 6.376 11 C -0.191 4.191 12 C -0.081 4.081 13 C -0.209 4.209 14 C -0.096 4.096 15 C -0.174 4.174 16 C -0.176 4.176 17 S 0.461 5.539 18 C -0.745 4.745 19 H 0.110 0.890 20 C -0.128 4.128 21 N -0.487 5.487 22 Si 0.746 3.254 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.194 1.194 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.226 0.774 34 H 0.291 0.709 35 H 0.254 0.746 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.146 -7.732 0.175 19.726 hybrid contribution 1.692 -2.345 -0.203 2.899 sum -16.454 -10.078 -0.027 19.295 Atomic orbital electron populations 1.21668 0.94380 1.02225 1.02414 1.21763 0.97111 0.95790 1.02938 1.21309 0.77684 0.97143 1.02699 1.45141 1.07694 1.06886 1.80828 1.15660 0.80156 0.84646 0.78398 1.91015 1.64985 1.30353 1.59127 1.44435 1.02049 1.01643 1.79997 1.44925 1.04858 0.99475 1.80302 1.18470 0.79259 0.90453 0.77204 1.90830 1.65869 1.32351 1.48511 1.18691 0.92116 0.90830 1.17502 1.20822 0.97622 0.92049 0.97605 1.20625 0.94284 0.96907 1.09071 1.21120 0.94180 0.97486 0.96770 1.21452 1.01138 0.91046 1.03805 1.23057 0.95296 1.02312 0.96954 1.84750 0.96908 0.98109 1.74101 1.24021 0.94337 0.98449 1.57670 0.89010 1.25122 1.00250 0.94433 0.92948 1.69954 1.33256 1.02492 1.43028 0.86170 0.81089 0.78791 0.79374 1.19395 1.20493 1.19412 0.92278 0.92112 0.92284 0.91138 0.91141 0.91330 0.91334 0.77371 0.70931 0.74599 0.87453 0.86826 0.86798 0.84170 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.15 0.37 -0.33 16 2 C -0.14 -0.72 6.05 -26.73 -0.16 -0.88 16 3 C 0.14 1.09 5.67 -4.04 -0.02 1.07 16 4 N -0.75 -7.08 5.52 -65.23 -0.36 -7.44 16 5 C 0.71 9.68 8.68 -86.92 -0.75 8.93 16 6 O -0.58 -9.91 17.18 5.29 0.09 -9.82 16 7 N -0.53 -7.37 6.26 27.63 0.17 -7.19 16 8 N -0.54 -7.13 6.21 30.43 0.19 -6.94 16 9 C 0.56 9.87 7.87 -12.52 -0.10 9.78 16 10 O -0.50 -10.92 13.61 5.27 0.07 -10.85 16 11 C -0.17 -3.10 5.89 -104.76 -0.62 -3.72 16 12 C -0.06 -0.82 9.53 -39.20 -0.37 -1.20 16 13 C -0.18 -2.46 10.02 -39.58 -0.40 -2.86 16 14 C -0.07 -1.12 10.03 -39.54 -0.40 -1.51 16 15 C -0.15 -2.87 9.22 -39.37 -0.36 -3.24 16 16 C -0.06 -1.18 6.15 -38.39 -0.24 -1.41 16 17 S 0.20 4.99 18.56 -107.50 -2.00 2.99 16 18 C -0.60 -15.81 9.00 30.94 0.28 -15.54 16 19 H 0.09 2.28 4.98 -52.49 -0.26 2.01 16 20 C 0.08 2.23 5.49 -17.46 -0.10 2.14 16 21 N -0.86 -24.00 13.22 55.49 0.73 -23.27 16 22 Si 0.92 20.02 29.55 -169.99 -5.02 15.00 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.39 2.74 6.39 -40.82 -0.26 2.48 16 34 H 0.44 6.81 8.10 -182.60 -1.48 5.33 16 35 H 0.41 3.90 4.73 -182.60 -0.86 3.04 16 36 H 0.11 0.97 6.40 -52.49 -0.34 0.63 16 37 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.14 2.83 5.04 -52.49 -0.26 2.57 16 40 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -32.75 352.00 -10.09 -42.85 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.41 Total: 8.14 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.87 Total: -8.77 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.74 Total: -44.84 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.16 Total: -20.67 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -2.00 Total: 2.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.75 -10.09 -42.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049279585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.497 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds