Wall clock time and date at job start Tue Mar 31 2020 14:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 N 1.46497 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99991 * 180.02562 * 4 3 2 6 6 O 1.21588 * 120.00308 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99949 * 179.97438 * 5 4 3 8 8 N 1.40096 * 120.00243 * 359.97438 * 7 5 4 9 9 C 1.34778 * 120.00341 * 180.28019 * 8 7 5 10 10 O 1.21612 * 119.99727 * 359.71871 * 9 8 7 11 11 C 1.47421 * 119.99994 * 179.72597 * 9 8 7 12 12 C 1.39672 * 120.21909 * 359.97438 * 11 9 8 13 13 C 1.37804 * 119.94363 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.37880 * 359.97438 * 13 12 11 15 15 C 1.37914 * 120.43994 * 0.02578 * 14 13 12 16 16 C 1.39115 * 120.04469 * 359.67379 * 15 14 13 17 17 S 1.76201 * 120.18647 * 180.32139 * 16 15 14 18 18 C 1.76201 * 100.00134 * 6.85621 * 17 16 15 19 19 H 1.08000 * 119.99961 * 5.65174 * 18 17 16 20 20 C 1.38808 * 120.00125 * 185.65518 * 18 17 16 21 21 N 1.31553 * 119.99937 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47027 * 60.00193 * 22 20 18 24 24 H 1.48496 * 109.47009 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47473 * 300.00238 * 22 20 18 26 26 H 1.09000 * 109.47010 * 60.00395 * 1 2 3 27 27 H 1.09007 * 109.47130 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47299 * 299.99768 * 1 2 3 29 29 H 1.08998 * 109.47195 * 239.99488 * 2 1 3 30 30 H 1.09004 * 109.47422 * 119.99891 * 2 1 3 31 31 H 1.08998 * 109.47412 * 59.99621 * 3 2 1 32 32 H 1.09004 * 109.46792 * 300.00276 * 3 2 1 33 33 H 0.96997 * 120.00187 * 359.97438 * 4 3 2 34 34 H 0.97005 * 119.99866 * 180.02562 * 7 5 4 35 35 H 0.97006 * 120.00008 * 359.97438 * 8 7 5 36 36 H 1.08000 * 120.03077 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.81325 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.78131 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.97339 * 179.97438 * 15 14 13 40 40 H 0.96995 * 120.00039 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5709 3.6627 0.0002 7 7 5.5266 2.6097 -0.0003 8 7 6.2271 1.3965 -0.0002 9 6 7.5749 1.3965 0.0055 10 8 8.1829 2.4497 0.0054 11 6 8.3119 0.1198 0.0117 12 6 7.6182 -1.0925 0.0122 13 6 8.3129 -2.2826 0.0185 14 6 9.6995 -2.2851 0.0238 15 6 10.4004 -1.0973 0.0234 16 6 9.7173 0.1145 0.0107 17 16 10.6090 1.6341 0.0015 18 6 12.2506 1.0245 -0.1943 19 1 12.4191 -0.0295 -0.3591 20 6 13.3272 1.8988 -0.1366 21 7 13.1219 3.1825 0.0648 22 14 15.0674 1.2523 -0.3434 23 1 15.2007 0.6065 -1.6741 24 1 16.0294 2.3789 -0.2409 25 1 15.3558 0.2575 0.7206 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9900 0.6025 -0.0006 34 1 6.0115 3.4498 0.0004 35 1 5.7421 0.5564 0.0003 36 1 6.5382 -1.0972 0.0085 37 1 7.7743 -3.2187 0.0194 38 1 10.2342 -3.2234 0.0292 39 1 11.4803 -1.1081 0.0279 40 1 13.8742 3.7934 0.1055 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049279585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:04 Heat of formation + Delta-G solvation = -27.654112 kcal Electronic energy + Delta-G solvation = -23928.182886 eV Core-core repulsion = 20255.675897 eV Total energy + Delta-G solvation = -3672.506989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73419 -40.63219 -39.01152 -36.87341 -36.86027 -34.76808 -33.52262 -32.96576 -31.79510 -30.88678 -27.84026 -27.08764 -25.00795 -23.46762 -22.82288 -22.27505 -22.08854 -20.46349 -19.68599 -18.86000 -18.07719 -17.23881 -17.11803 -16.95355 -16.66149 -16.20162 -16.04830 -15.76231 -15.54051 -15.48064 -15.34102 -14.73780 -14.50800 -13.80293 -13.70266 -13.47937 -13.31226 -12.96906 -12.92630 -12.88518 -12.56615 -12.49743 -12.07435 -11.99011 -11.85664 -11.70169 -11.54673 -11.41752 -11.33596 -10.40742 -10.33539 -10.00560 -9.89279 -9.37850 -8.47383 -8.45576 -6.24915 -0.02359 0.55520 0.73635 1.27250 1.38626 1.44820 1.63866 1.72829 1.91900 2.03074 2.21677 2.87400 3.02536 3.22374 3.41990 3.93196 3.97615 4.01446 4.14196 4.29409 4.39921 4.59002 4.64150 4.72544 4.77968 4.82842 4.88046 5.06868 5.20948 5.26344 5.28677 5.30839 5.38198 5.44098 5.46585 5.56233 5.61708 5.70230 6.09947 6.16470 6.29267 6.61702 6.96039 7.17704 7.37438 8.59537 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002842 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.614611 B = 9848.491843 C =11151.066052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.131 3.869 4 N -0.728 5.728 5 C 0.712 3.288 6 O -0.617 6.617 7 N -0.532 5.532 8 N -0.511 5.511 9 C 0.553 3.447 10 O -0.546 6.546 11 C -0.173 4.173 12 C -0.051 4.051 13 C -0.153 4.153 14 C -0.065 4.065 15 C -0.173 4.173 16 C -0.069 4.069 17 S 0.066 5.934 18 C -0.601 4.601 19 H 0.097 0.903 20 C 0.024 3.976 21 N -0.905 5.905 22 Si 0.992 3.008 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.259 1.259 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.407 0.593 34 H 0.436 0.564 35 H 0.433 0.567 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.150 0.850 39 H 0.119 0.881 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 -16.099 -0.058 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.008 3.992 4 N -0.386 5.386 5 C 0.411 3.589 6 O -0.494 6.494 7 N -0.286 5.286 8 N -0.267 5.267 9 C 0.343 3.657 10 O -0.423 6.423 11 C -0.188 4.188 12 C -0.071 4.071 13 C -0.175 4.175 14 C -0.086 4.086 15 C -0.199 4.199 16 C -0.187 4.187 17 S 0.326 5.674 18 C -0.748 4.748 19 H 0.115 0.885 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.813 3.187 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.183 1.183 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.244 0.756 34 H 0.281 0.719 35 H 0.279 0.721 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.168 0.832 39 H 0.137 0.863 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.064 -13.096 0.053 24.803 hybrid contribution 2.099 -1.054 -0.158 2.354 sum -18.966 -14.149 -0.105 23.663 Atomic orbital electron populations 1.21688 0.94057 1.02891 1.02214 1.21723 0.97246 0.93508 1.04103 1.21482 0.76501 0.99332 1.01907 1.45057 1.08308 1.06100 1.79137 1.15799 0.79699 0.85272 0.78150 1.90992 1.65491 1.32194 1.60760 1.44527 1.02306 1.01544 1.80219 1.44498 1.03657 1.00156 1.78356 1.18628 0.80400 0.90014 0.76703 1.90845 1.67180 1.33954 1.50364 1.19017 0.91013 0.92679 1.16119 1.21460 1.00579 0.90021 0.95007 1.21356 0.93410 0.98973 1.03807 1.21592 0.95613 0.97058 0.94356 1.21449 1.00631 0.92107 1.05668 1.22941 0.96452 1.00314 0.99003 1.84939 0.98823 1.03228 1.80440 1.24217 0.94561 0.98593 1.57422 0.88505 1.26149 1.04618 0.94569 0.92860 1.70118 1.34101 1.03919 1.45835 0.85094 0.75684 0.78232 0.79668 1.18567 1.20171 1.18338 0.92559 0.90964 0.92562 0.89912 0.89908 0.92224 0.92236 0.75551 0.71949 0.72074 0.81550 0.81168 0.83229 0.86342 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 71.98 0.71 -0.26 16 2 C -0.13 -0.84 6.05 30.59 0.19 -0.66 16 3 C 0.13 1.80 5.67 86.38 0.49 2.29 16 4 N -0.73 -11.64 5.52 -478.54 -2.64 -14.28 16 5 C 0.71 18.46 8.68 179.06 1.55 20.01 16 6 O -0.62 -21.06 17.18 -3.99 -0.07 -21.13 16 7 N -0.53 -14.52 6.26 -184.75 -1.16 -15.68 16 8 N -0.51 -12.28 6.21 -175.88 -1.09 -13.37 16 9 C 0.55 19.38 7.87 86.66 0.68 20.06 16 10 O -0.55 -25.18 13.61 -4.07 -0.06 -25.23 16 11 C -0.17 -5.83 5.89 -19.95 -0.12 -5.95 16 12 C -0.05 -1.06 9.53 22.51 0.21 -0.85 16 13 C -0.15 -2.93 10.02 22.27 0.22 -2.70 16 14 C -0.07 -1.68 10.03 22.29 0.22 -1.45 16 15 C -0.17 -6.56 9.22 22.40 0.21 -6.35 16 16 C -0.07 -2.96 6.15 23.04 0.14 -2.82 16 17 S 0.07 3.66 18.56 -56.49 -1.05 2.61 16 18 C -0.60 -34.00 9.00 67.96 0.61 -33.39 16 19 H 0.10 5.10 4.98 -2.91 -0.01 5.09 16 20 C 0.02 1.34 5.49 84.87 0.47 1.80 16 21 N -0.90 -54.72 13.22 21.65 0.29 -54.44 16 22 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.41 3.77 6.39 -92.71 -0.59 3.18 16 34 H 0.44 13.81 8.10 -213.32 -1.73 12.08 16 35 H 0.43 6.09 4.73 -213.32 -1.01 5.08 16 36 H 0.17 1.53 6.40 -2.91 -0.02 1.51 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.12 4.95 5.04 -2.91 -0.01 4.93 16 40 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -82.68 352.00 -0.37 -83.05 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -2.21 Total: 23.71 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 5.59 Total: -10.27 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -4.60 Total: -97.76 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.12 Total: -46.36 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.05 Total: 2.61 kcal Total: -82.68 -0.37 -83.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049279585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.391 kcal (2) G-P(sol) polarization free energy of solvation -82.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds