Wall clock time and date at job start Tue Mar 31 2020 14:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47407 * 2 1 4 4 N 1.46497 * 109.47337 * 120.00612 * 2 1 3 5 5 C 1.34775 * 119.99991 * 154.99989 * 4 2 1 6 6 O 1.21588 * 120.00308 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99949 * 179.97438 * 5 4 2 8 8 N 1.40096 * 120.00243 * 359.97438 * 7 5 4 9 9 C 1.34778 * 120.00341 * 180.28019 * 8 7 5 10 10 O 1.21612 * 119.99727 * 359.71871 * 9 8 7 11 11 C 1.47421 * 119.99994 * 179.72597 * 9 8 7 12 12 C 1.39672 * 120.21909 * 359.97438 * 11 9 8 13 13 C 1.37804 * 119.94363 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.37880 * 359.97438 * 13 12 11 15 15 C 1.37914 * 120.43994 * 0.02578 * 14 13 12 16 16 C 1.39115 * 120.04469 * 359.67379 * 15 14 13 17 17 S 1.76201 * 120.18647 * 180.32139 * 16 15 14 18 18 C 1.76201 * 100.00134 * 6.85621 * 17 16 15 19 19 H 1.08000 * 119.99961 * 5.65174 * 18 17 16 20 20 C 1.38808 * 120.00125 * 185.65518 * 18 17 16 21 21 N 1.31553 * 119.99937 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47433 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46985 * 120.00120 * 22 20 18 25 25 H 1.48496 * 109.47261 * 239.99896 * 22 20 18 26 26 H 1.09007 * 109.46422 * 299.99918 * 1 2 3 27 27 H 1.09000 * 109.47650 * 59.99524 * 1 2 3 28 28 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46740 * 240.00319 * 2 1 3 30 30 H 1.08994 * 109.47305 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47104 * 300.00811 * 3 2 1 32 32 H 1.09000 * 109.46910 * 60.00423 * 3 2 1 33 33 H 0.96997 * 120.00187 * 334.99227 * 4 2 1 34 34 H 0.97005 * 119.99866 * 180.02562 * 7 5 4 35 35 H 0.97006 * 120.00008 * 359.97438 * 8 7 5 36 36 H 1.08000 * 120.03077 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.81325 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.78131 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.97339 * 179.97438 * 15 14 13 40 40 H 0.96995 * 120.00039 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2592 1.1942 6 8 3.9373 -1.1993 0.1996 7 7 3.6898 -1.8942 2.2947 8 7 2.8871 -1.9629 3.4408 9 6 3.3389 -2.5930 4.5433 10 8 4.4413 -3.1064 4.5414 11 6 2.4966 -2.6600 5.7513 12 6 1.2299 -2.0715 5.7586 13 6 0.4475 -2.1371 6.8911 14 6 0.9099 -2.7853 8.0263 15 6 2.1581 -3.3717 8.0365 16 6 2.9604 -3.3217 6.9011 17 16 4.5523 -4.0770 6.9072 18 6 4.5009 -4.8866 8.4714 19 1 3.5911 -4.8800 9.0532 20 6 5.6299 -5.5327 8.9559 21 7 6.7383 -5.5403 8.2474 22 14 5.5756 -6.3903 10.6144 23 1 4.2227 -6.2367 11.2072 24 1 5.8760 -7.8335 10.4355 25 1 6.5846 -5.7831 11.5189 26 1 -0.3632 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.4624 -0.7388 1.9894 34 1 4.5695 -2.3031 2.2934 35 1 2.0079 -1.5531 3.4425 36 1 0.8642 -1.5649 4.8777 37 1 -0.5315 -1.6810 6.8945 38 1 0.2889 -2.8305 8.9086 39 1 2.5109 -3.8742 8.9249 40 1 7.5273 -5.9915 8.5862 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049468560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:08 Heat of formation + Delta-G solvation = -0.306689 kcal Electronic energy + Delta-G solvation = -24190.838772 eV Core-core repulsion = 20519.517656 eV Total energy + Delta-G solvation = -3671.321116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58179 -39.38162 -37.66696 -36.27268 -35.53509 -32.85064 -31.99252 -31.19855 -30.43006 -29.48656 -27.53095 -25.92885 -23.65958 -22.66510 -22.08133 -20.94079 -20.58851 -19.39918 -18.10970 -17.45079 -16.77052 -16.07939 -15.74700 -15.60119 -15.21316 -14.87988 -14.69312 -14.56609 -14.22307 -14.08499 -13.90272 -13.27437 -13.14606 -13.00121 -12.65819 -12.50265 -12.25985 -11.73198 -11.72055 -11.35901 -11.31142 -11.27721 -11.11869 -11.02026 -10.59132 -10.41153 -10.01635 -9.84237 -9.62453 -9.42996 -8.85835 -8.56258 -8.24156 -8.17690 -6.66440 -6.55557 -4.27263 1.33290 1.87810 1.95010 2.83700 2.93184 3.03387 3.06671 3.15578 3.31598 3.32949 3.97133 4.31770 4.50242 4.70054 4.75226 4.86265 4.92476 4.96735 5.06700 5.22863 5.25792 5.37480 5.46805 5.47789 5.61318 5.73851 5.76174 5.95928 5.98535 6.22514 6.24586 6.39597 6.53567 6.57527 6.69552 6.91164 7.00723 7.33842 7.45862 7.47109 7.72196 8.07166 8.29410 8.62522 8.90940 10.47755 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002987 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.942274 B = 9371.954903 C =10576.603650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 C -0.166 4.166 4 N -0.742 5.742 5 C 0.713 3.287 6 O -0.580 6.580 7 N -0.527 5.527 8 N -0.540 5.540 9 C 0.556 3.444 10 O -0.501 6.501 11 C -0.174 4.174 12 C -0.061 4.061 13 C -0.184 4.184 14 C -0.073 4.073 15 C -0.149 4.149 16 C -0.055 4.055 17 S 0.194 5.806 18 C -0.597 4.597 19 H 0.093 0.907 20 C 0.084 3.916 21 N -0.855 5.855 22 Si 0.921 3.079 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.391 0.609 34 H 0.444 0.556 35 H 0.412 0.588 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 10.739 -9.492 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 C -0.224 4.224 4 N -0.400 5.400 5 C 0.412 3.588 6 O -0.455 6.455 7 N -0.282 5.282 8 N -0.295 5.295 9 C 0.346 3.654 10 O -0.376 6.376 11 C -0.191 4.191 12 C -0.081 4.081 13 C -0.209 4.209 14 C -0.096 4.096 15 C -0.174 4.174 16 C -0.176 4.176 17 S 0.460 5.540 18 C -0.744 4.744 19 H 0.111 0.889 20 C -0.128 4.128 21 N -0.487 5.487 22 Si 0.746 3.254 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.225 0.775 34 H 0.290 0.710 35 H 0.254 0.746 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.054 10.209 -11.053 19.279 hybrid contribution -1.494 -0.439 2.440 2.895 sum -13.548 9.770 -8.613 18.794 Atomic orbital electron populations 1.22102 0.94007 1.02822 1.03052 1.20842 0.93713 0.92750 0.87830 1.22226 1.02450 0.95754 1.02011 1.45276 1.17074 1.60188 1.17492 1.15681 0.82313 0.78518 0.82259 1.91007 1.57407 1.65959 1.31112 1.44448 1.18783 1.60783 1.04142 1.44920 1.17190 1.61415 1.06010 1.18466 0.87127 0.78312 0.81484 1.90830 1.20193 1.44822 1.81735 1.18696 0.96248 1.11211 0.92965 1.20822 0.92767 0.97105 0.97410 1.20627 1.00284 1.05832 0.94132 1.21121 0.95317 0.95683 0.97438 1.21457 0.94594 1.02673 0.98721 1.23055 1.03127 0.97394 0.94008 1.84757 1.04175 1.46657 1.18425 1.24098 1.01677 1.40011 1.08566 0.88913 1.25125 0.94094 0.94993 0.98573 1.69973 1.01824 1.39410 1.37521 0.86067 0.78821 0.79077 0.81403 1.19086 1.20161 1.20157 0.91963 0.90711 0.91807 0.89164 0.91844 0.91601 0.92469 0.77473 0.70983 0.74592 0.87450 0.86827 0.86803 0.84155 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.38 37.16 0.35 -0.49 16 2 C 0.15 1.24 3.18 -67.93 -0.22 1.02 16 3 C -0.17 -1.29 9.48 37.16 0.35 -0.93 16 4 N -0.74 -6.98 5.04 -58.68 -0.30 -7.27 16 5 C 0.71 9.56 8.64 -86.92 -0.75 8.81 16 6 O -0.58 -9.72 16.84 5.29 0.09 -9.63 16 7 N -0.53 -7.34 6.26 27.63 0.17 -7.17 16 8 N -0.54 -7.12 6.21 30.43 0.19 -6.93 16 9 C 0.56 9.88 7.87 -12.52 -0.10 9.78 16 10 O -0.50 -10.93 13.61 5.27 0.07 -10.86 16 11 C -0.17 -3.10 5.89 -104.76 -0.62 -3.72 16 12 C -0.06 -0.83 9.53 -39.20 -0.37 -1.20 16 13 C -0.18 -2.47 10.02 -39.58 -0.40 -2.86 16 14 C -0.07 -1.12 10.03 -39.54 -0.40 -1.52 16 15 C -0.15 -2.88 9.22 -39.37 -0.36 -3.24 16 16 C -0.06 -1.17 6.15 -38.39 -0.24 -1.41 16 17 S 0.19 4.95 18.56 -107.50 -2.00 2.96 16 18 C -0.60 -15.79 9.00 30.94 0.28 -15.51 16 19 H 0.09 2.31 4.98 -52.49 -0.26 2.05 16 20 C 0.08 2.22 5.49 -17.46 -0.10 2.12 16 21 N -0.86 -23.99 13.22 55.49 0.73 -23.26 16 22 Si 0.92 20.05 29.55 -169.99 -5.02 15.02 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.39 2.76 6.52 -40.82 -0.27 2.49 16 34 H 0.44 6.79 8.10 -182.60 -1.48 5.31 16 35 H 0.41 3.91 4.73 -182.60 -0.86 3.05 16 36 H 0.11 0.97 6.40 -52.49 -0.34 0.64 16 37 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.14 2.85 5.04 -52.49 -0.26 2.58 16 40 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -32.56 351.12 -9.71 -42.28 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.38 Total: 8.72 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.57 Total: -9.15 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.80 Total: -44.63 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.16 Total: -20.49 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -2.00 Total: 2.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.56 -9.71 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049468560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.968 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds