Wall clock time and date at job start Tue Mar 31 2020 14:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47407 * 2 1 4 4 N 1.46497 * 109.47337 * 120.00612 * 2 1 3 5 5 C 1.34775 * 119.99991 * 154.99989 * 4 2 1 6 6 O 1.21588 * 120.00308 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99949 * 179.97438 * 5 4 2 8 8 N 1.40096 * 120.00243 * 359.97438 * 7 5 4 9 9 C 1.34778 * 120.00341 * 180.28019 * 8 7 5 10 10 O 1.21612 * 119.99727 * 359.71871 * 9 8 7 11 11 C 1.47421 * 119.99994 * 179.72597 * 9 8 7 12 12 C 1.39672 * 120.21909 * 359.97438 * 11 9 8 13 13 C 1.37804 * 119.94363 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.37880 * 359.97438 * 13 12 11 15 15 C 1.37914 * 120.43994 * 0.02578 * 14 13 12 16 16 C 1.39115 * 120.04469 * 359.67379 * 15 14 13 17 17 S 1.76201 * 120.18647 * 180.32139 * 16 15 14 18 18 C 1.76201 * 100.00134 * 6.85621 * 17 16 15 19 19 H 1.08000 * 119.99961 * 5.65174 * 18 17 16 20 20 C 1.38808 * 120.00125 * 185.65518 * 18 17 16 21 21 N 1.31553 * 119.99937 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47433 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46985 * 120.00120 * 22 20 18 25 25 H 1.48496 * 109.47261 * 239.99896 * 22 20 18 26 26 H 1.09007 * 109.46422 * 299.99918 * 1 2 3 27 27 H 1.09000 * 109.47650 * 59.99524 * 1 2 3 28 28 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46740 * 240.00319 * 2 1 3 30 30 H 1.08994 * 109.47305 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47104 * 300.00811 * 3 2 1 32 32 H 1.09000 * 109.46910 * 60.00423 * 3 2 1 33 33 H 0.96997 * 120.00187 * 334.99227 * 4 2 1 34 34 H 0.97005 * 119.99866 * 180.02562 * 7 5 4 35 35 H 0.97006 * 120.00008 * 359.97438 * 8 7 5 36 36 H 1.08000 * 120.03077 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.81325 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.78131 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.97339 * 179.97438 * 15 14 13 40 40 H 0.96995 * 120.00039 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2592 1.1942 6 8 3.9373 -1.1993 0.1996 7 7 3.6898 -1.8942 2.2947 8 7 2.8871 -1.9629 3.4408 9 6 3.3389 -2.5930 4.5433 10 8 4.4413 -3.1064 4.5414 11 6 2.4966 -2.6600 5.7513 12 6 1.2299 -2.0715 5.7586 13 6 0.4475 -2.1371 6.8911 14 6 0.9099 -2.7853 8.0263 15 6 2.1581 -3.3717 8.0365 16 6 2.9604 -3.3217 6.9011 17 16 4.5523 -4.0770 6.9072 18 6 4.5009 -4.8866 8.4714 19 1 3.5911 -4.8800 9.0532 20 6 5.6299 -5.5327 8.9559 21 7 6.7383 -5.5403 8.2474 22 14 5.5756 -6.3903 10.6144 23 1 4.2227 -6.2367 11.2072 24 1 5.8760 -7.8335 10.4355 25 1 6.5846 -5.7831 11.5189 26 1 -0.3632 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.4624 -0.7388 1.9894 34 1 4.5695 -2.3031 2.2934 35 1 2.0079 -1.5531 3.4425 36 1 0.8642 -1.5649 4.8777 37 1 -0.5315 -1.6810 6.8945 38 1 0.2889 -2.8305 8.9086 39 1 2.5109 -3.8742 8.9249 40 1 7.5273 -5.9915 8.5862 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049468560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:07 Heat of formation + Delta-G solvation = -24.498474 kcal Electronic energy + Delta-G solvation = -24191.887806 eV Core-core repulsion = 20519.517656 eV Total energy + Delta-G solvation = -3672.370151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75637 -40.67145 -39.02171 -37.11092 -36.85228 -34.77029 -33.26438 -32.12064 -31.79666 -30.70858 -28.03854 -27.84536 -25.02335 -23.63416 -23.32914 -22.21765 -21.55245 -20.57282 -19.72373 -18.84316 -18.03314 -17.24045 -17.02830 -16.88976 -16.71967 -16.14338 -15.86495 -15.74247 -15.47894 -15.34707 -15.03892 -14.73998 -14.49231 -13.91298 -13.63204 -13.32907 -13.15729 -13.01358 -13.00246 -12.88590 -12.55274 -12.52139 -12.26828 -12.04624 -11.88001 -11.80494 -11.52237 -11.42857 -11.35163 -10.41014 -10.33187 -9.99908 -9.89454 -9.37504 -8.47474 -8.46021 -6.25151 -0.02418 0.55305 0.74735 1.27456 1.35844 1.46458 1.64287 1.74217 1.93420 2.04501 2.21138 2.87185 3.02396 3.22315 3.42074 3.94518 3.98020 4.03615 4.19251 4.29256 4.36856 4.58969 4.63979 4.75523 4.81260 4.82698 4.97654 5.03005 5.06927 5.26457 5.29998 5.36869 5.39307 5.46206 5.48379 5.57953 5.63508 5.70111 6.10120 6.16588 6.30330 6.63900 6.95961 7.20357 7.39150 8.59557 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002987 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.942274 B = 9371.954903 C =10576.603650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 C -0.163 4.163 4 N -0.724 5.724 5 C 0.712 3.288 6 O -0.616 6.616 7 N -0.533 5.533 8 N -0.510 5.510 9 C 0.553 3.447 10 O -0.547 6.547 11 C -0.173 4.173 12 C -0.051 4.051 13 C -0.152 4.152 14 C -0.065 4.065 15 C -0.173 4.173 16 C -0.068 4.068 17 S 0.065 5.935 18 C -0.600 4.600 19 H 0.097 0.903 20 C 0.024 3.976 21 N -0.905 5.905 22 Si 0.993 3.007 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.271 1.271 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.406 0.594 34 H 0.435 0.565 35 H 0.433 0.567 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.150 0.850 39 H 0.119 0.881 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.370 13.183 -9.460 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 C -0.221 4.221 4 N -0.382 5.382 5 C 0.412 3.588 6 O -0.493 6.493 7 N -0.287 5.287 8 N -0.266 5.266 9 C 0.342 3.658 10 O -0.424 6.424 11 C -0.188 4.188 12 C -0.071 4.071 13 C -0.175 4.175 14 C -0.086 4.086 15 C -0.199 4.199 16 C -0.187 4.187 17 S 0.325 5.675 18 C -0.746 4.746 19 H 0.115 0.885 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.814 3.186 23 H -0.178 1.178 24 H -0.198 1.198 25 H -0.196 1.196 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.243 0.757 34 H 0.280 0.720 35 H 0.279 0.721 36 H 0.184 0.816 37 H 0.188 0.812 38 H 0.168 0.832 39 H 0.136 0.864 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.859 12.750 -11.048 24.568 hybrid contribution -0.165 -0.903 2.206 2.390 sum -18.025 11.847 -8.841 23.311 Atomic orbital electron populations 1.22062 0.90971 1.03416 1.04655 1.21041 0.95931 0.92367 0.86333 1.22199 1.00421 0.95852 1.03624 1.45229 1.15478 1.58861 1.18639 1.15821 0.83184 0.78439 0.81378 1.90984 1.58793 1.67202 1.32337 1.44552 1.18714 1.61035 1.04399 1.44490 1.17509 1.59851 1.04773 1.18625 0.86574 0.78072 0.82486 1.90844 1.22314 1.46755 1.82478 1.19021 0.97878 1.10244 0.91677 1.21457 0.90233 0.95410 0.99961 1.21355 1.01765 1.02220 0.92188 1.21589 0.93492 0.93740 0.99799 1.21447 0.96527 1.04307 0.97570 1.22936 1.00710 0.98742 0.96281 1.84948 1.10019 1.52108 1.20437 1.24277 1.01923 1.40088 1.08323 0.88510 1.26146 0.93659 0.95930 1.02463 1.70131 1.02657 1.41561 1.39665 0.84993 0.79247 0.77721 0.76617 1.17817 1.19802 1.19637 0.90155 0.89335 0.91701 0.91285 0.94945 0.89796 0.91095 0.75718 0.72049 0.72090 0.81576 0.81165 0.83247 0.86375 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.38 71.98 0.68 -0.27 16 2 C 0.15 2.00 3.18 44.99 0.14 2.15 16 3 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 4 N -0.72 -11.61 5.04 -457.82 -2.31 -13.92 16 5 C 0.71 18.47 8.64 179.06 1.55 20.02 16 6 O -0.62 -20.90 16.84 -3.99 -0.07 -20.97 16 7 N -0.53 -14.63 6.26 -184.75 -1.16 -15.79 16 8 N -0.51 -12.35 6.21 -175.88 -1.09 -13.44 16 9 C 0.55 19.46 7.87 86.66 0.68 20.14 16 10 O -0.55 -25.29 13.61 -4.07 -0.06 -25.34 16 11 C -0.17 -5.85 5.89 -19.95 -0.12 -5.97 16 12 C -0.05 -1.07 9.53 22.51 0.21 -0.85 16 13 C -0.15 -2.94 10.02 22.27 0.22 -2.72 16 14 C -0.07 -1.69 10.03 22.29 0.22 -1.46 16 15 C -0.17 -6.58 9.22 22.40 0.21 -6.38 16 16 C -0.07 -2.95 6.15 23.04 0.14 -2.81 16 17 S 0.07 3.62 18.56 -56.49 -1.05 2.57 16 18 C -0.60 -33.93 9.00 67.96 0.61 -33.32 16 19 H 0.10 5.13 4.98 -2.91 -0.01 5.12 16 20 C 0.02 1.33 5.49 84.87 0.47 1.80 16 21 N -0.91 -54.75 13.22 21.65 0.29 -54.47 16 22 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 23 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 27 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 1.26 7.58 -2.39 -0.02 1.25 16 30 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.41 3.86 6.52 -92.71 -0.60 3.25 16 34 H 0.44 13.89 8.10 -213.32 -1.73 12.16 16 35 H 0.43 6.18 4.73 -213.32 -1.01 5.18 16 36 H 0.17 1.56 6.40 -2.91 -0.02 1.54 16 37 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 39 H 0.12 4.96 5.04 -2.91 -0.01 4.95 16 40 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -82.93 351.12 0.06 -82.87 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -2.22 Total: 24.51 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 5.70 Total: -11.14 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -4.27 Total: -97.62 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.12 Total: -46.31 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.05 Total: 2.57 kcal Total: -82.93 0.06 -82.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049468560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.369 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds