Wall clock time and date at job start Tue Mar 31 2020 14:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47458 * 2 1 4 4 N 1.46501 * 109.47367 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00086 * 264.77289 * 4 3 2 6 6 H 1.08004 * 120.00061 * 138.85667 * 5 4 3 7 7 C 1.38953 * 120.00119 * 318.85383 * 5 4 3 8 8 N 1.31415 * 119.99638 * 341.82612 * 7 5 4 9 9 Si 1.86794 * 119.99877 * 161.82803 * 7 5 4 10 10 H 1.48497 * 109.47229 * 90.00231 * 9 7 5 11 11 H 1.48499 * 109.46881 * 209.99798 * 9 7 5 12 12 H 1.48500 * 109.47443 * 329.99737 * 9 7 5 13 13 C 1.34781 * 119.99614 * 84.77145 * 4 3 2 14 14 O 1.21293 * 119.99481 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00217 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.47446 * 180.02562 * 15 13 4 17 17 C 1.50697 * 109.47773 * 180.02562 * 16 15 13 18 18 O 1.21267 * 119.99284 * 0.02562 * 17 16 15 19 19 C 1.47086 * 120.00506 * 180.02562 * 17 16 15 20 20 C 1.39903 * 120.15307 * 359.72060 * 19 17 16 21 21 C 1.37818 * 119.83513 * 179.81114 * 20 19 17 22 22 C 1.38570 * 120.16014 * 0.44603 * 21 20 19 23 23 Cl 1.73589 * 119.84068 * 179.76254 * 22 21 20 24 24 C 1.38572 * 120.31752 * 359.78778 * 22 21 20 25 25 C 1.37819 * 120.15803 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47048 * 59.99231 * 1 2 3 27 27 H 1.08993 * 109.47257 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46282 * 299.99959 * 1 2 3 29 29 H 1.09008 * 109.46893 * 240.00118 * 2 1 3 30 30 H 1.08998 * 109.47048 * 120.00769 * 2 1 3 31 31 H 1.09000 * 109.46872 * 60.00439 * 3 2 1 32 32 H 1.08998 * 109.47619 * 300.00420 * 3 2 1 33 33 H 0.97001 * 119.99339 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.47120 * 60.00152 * 15 13 4 35 35 H 1.09001 * 109.47710 * 300.00619 * 15 13 4 36 36 H 1.09000 * 109.46617 * 59.99851 * 16 15 13 37 37 H 1.09001 * 109.47141 * 300.00931 * 16 15 13 38 38 H 1.07999 * 120.08054 * 0.02611 * 20 19 17 39 39 H 1.07994 * 119.91983 * 180.18732 * 21 20 19 40 40 H 1.08000 * 119.91779 * 179.97438 * 24 22 21 41 41 H 1.07997 * 120.07481 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.5503 1.1815 6 1 5.0712 0.9480 1.3521 7 6 3.7542 2.4348 2.1600 8 7 2.9287 3.4076 1.8451 9 14 4.3402 2.2409 3.9230 10 1 5.5849 3.0266 4.1202 11 1 3.2910 2.7349 4.8505 12 1 4.6107 0.8073 4.2000 13 6 4.1784 1.3361 -1.1633 14 8 5.3914 1.3357 -1.1638 15 6 3.4244 1.2168 -2.4626 16 6 4.4180 1.1105 -3.6211 17 6 3.6640 0.9918 -4.9205 18 8 2.4514 0.9927 -4.9200 19 6 4.3989 0.8749 -6.1893 20 6 5.7979 0.8794 -6.1941 21 6 6.4798 0.7655 -7.3864 22 6 5.7831 0.6561 -8.5792 23 17 6.6503 0.5193 -10.0766 24 6 4.3973 0.6559 -8.5824 25 6 3.7022 0.7641 -7.3973 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 2.6234 4.0248 2.5284 34 1 2.7973 2.0977 -2.6010 35 1 2.7980 0.3252 -2.4387 36 1 5.0447 0.2295 -3.4825 37 1 5.0448 2.0020 -3.6452 38 1 6.3421 0.9684 -5.2656 39 1 7.5597 0.7658 -7.3914 40 1 3.8609 0.5706 -9.5158 41 1 2.6222 0.7642 -7.4014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060556271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:08 Heat of formation + Delta-G solvation = -65.495731 kcal Electronic energy + Delta-G solvation = -24155.385593 eV Core-core repulsion = 20446.901210 eV Total energy + Delta-G solvation = -3708.484383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26979 -38.81281 -38.23009 -36.75536 -35.28942 -33.04495 -32.44296 -31.36369 -31.25797 -30.97888 -26.58951 -25.55961 -24.31571 -23.32049 -22.57109 -20.94043 -19.82541 -18.66126 -17.71202 -16.87115 -16.43834 -16.01790 -15.58479 -15.50458 -14.93010 -14.67412 -14.25032 -14.11344 -13.95669 -13.88047 -13.72684 -13.60354 -12.85853 -12.64078 -12.50918 -12.14918 -11.89668 -11.74091 -11.66526 -11.45296 -11.33043 -11.27766 -11.14829 -10.92496 -10.81999 -10.55449 -10.33533 -10.22654 -9.88149 -9.70247 -9.44845 -9.08530 -8.89927 -8.39223 -7.39498 -6.30390 -3.98952 0.26658 0.94225 1.70461 2.21458 3.18312 3.26405 3.31162 3.41037 3.85437 3.94457 4.19596 4.39673 4.49754 4.84860 4.91374 4.94805 5.03705 5.09752 5.25200 5.44905 5.48260 5.59062 5.62411 5.71142 5.75754 5.81480 5.85544 5.97906 6.07704 6.15022 6.27047 6.29606 6.35033 6.41387 6.45695 6.51541 6.65630 6.94678 7.27455 7.49649 7.59660 8.31568 8.53049 9.20900 9.42230 10.03854 10.74671 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.002441 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.329335 B =11468.491547 C =12409.565827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.108 3.892 4 N -0.441 5.441 5 C -0.309 4.309 6 H 0.087 0.913 7 C 0.038 3.962 8 N -0.871 5.871 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.462 3.538 14 O -0.586 6.586 15 C -0.127 4.127 16 C -0.146 4.146 17 C 0.395 3.605 18 O -0.449 6.449 19 C -0.160 4.160 20 C -0.057 4.057 21 C -0.123 4.123 22 C -0.011 4.011 23 Cl -0.068 7.068 24 C -0.126 4.126 25 C -0.052 4.052 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -5.376 -17.970 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.016 4.016 4 N -0.159 5.159 5 C -0.437 4.437 6 H 0.105 0.895 7 C -0.166 4.166 8 N -0.509 5.509 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.250 3.750 14 O -0.470 6.470 15 C -0.167 4.167 16 C -0.183 4.183 17 C 0.272 3.728 18 O -0.324 6.324 19 C -0.161 4.161 20 C -0.075 4.075 21 C -0.142 4.142 22 C -0.037 4.037 23 Cl -0.039 7.039 24 C -0.144 4.144 25 C -0.071 4.071 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.305 -5.218 -17.972 18.717 hybrid contribution 0.277 0.046 0.653 0.711 sum 0.582 -5.172 -17.319 18.084 Atomic orbital electron populations 1.21678 0.96347 1.00675 1.01599 1.21981 0.94947 0.99342 1.01634 1.21543 0.82221 0.94275 1.03547 1.43434 1.04473 1.63161 1.04861 1.19345 1.11905 1.21423 0.91037 0.89529 1.25422 0.97049 0.93602 1.00522 1.69933 1.33523 1.13461 1.33964 0.86101 0.78427 0.78852 0.82304 1.20299 1.20863 1.19418 1.20321 0.88012 0.81744 0.84926 1.90499 1.14108 1.55330 1.87048 1.21449 0.98270 1.03881 0.93086 1.21747 0.99620 1.05645 0.91308 1.22701 0.88993 0.71109 0.89957 1.90516 1.16121 1.36272 1.89469 1.20792 0.94614 1.05179 0.95480 1.21610 0.93090 0.94211 0.98629 1.21084 1.00969 1.01619 0.90538 1.21276 0.92666 1.02257 0.87539 1.98385 1.76726 1.96116 1.32648 1.21036 0.91918 1.02156 0.99316 1.21422 1.01025 0.94051 0.90552 0.93048 0.93479 0.92789 0.93116 0.91779 0.87879 0.93232 0.92300 0.89649 0.89888 0.87701 0.87580 0.83347 0.84174 0.84403 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.56 6.17 -26.73 -0.16 -2.72 16 3 C 0.11 2.36 4.69 -4.05 -0.02 2.34 16 4 N -0.44 -11.07 2.50 -114.82 -0.29 -11.35 16 5 C -0.31 -8.50 8.84 -14.93 -0.13 -8.63 16 6 H 0.09 2.48 7.82 -52.48 -0.41 2.07 16 7 C 0.04 1.01 4.95 -17.47 -0.09 0.93 16 8 N -0.87 -23.56 11.61 55.50 0.64 -22.91 16 9 Si 0.92 20.55 29.59 -169.99 -5.03 15.52 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.46 10.99 7.59 -10.99 -0.08 10.91 16 14 O -0.59 -15.59 15.89 5.55 0.09 -15.50 16 15 C -0.13 -2.33 3.59 -27.89 -0.10 -2.43 16 16 C -0.15 -2.19 3.60 -27.88 -0.10 -2.29 16 17 C 0.39 5.43 7.11 -30.72 -0.22 5.21 16 18 O -0.45 -7.21 15.97 5.57 0.09 -7.13 16 19 C -0.16 -1.82 5.87 -105.07 -0.62 -2.43 16 20 C -0.06 -0.56 9.47 -39.11 -0.37 -0.93 16 21 C -0.12 -1.10 9.81 -39.61 -0.39 -1.49 16 22 C -0.01 -0.10 6.33 -39.34 -0.25 -0.35 16 23 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 24 C -0.13 -1.11 9.81 -39.61 -0.39 -1.50 16 25 C -0.05 -0.53 9.60 -39.12 -0.38 -0.91 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.89 6.60 -51.92 -0.34 0.54 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.10 2.47 5.76 -51.93 -0.30 2.17 16 32 H 0.05 1.01 6.66 -51.93 -0.35 0.67 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.09 1.58 7.37 -51.92 -0.38 1.19 16 35 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 36 H 0.10 1.50 8.05 -51.93 -0.42 1.08 16 37 H 0.11 1.58 8.04 -51.93 -0.42 1.16 16 38 H 0.15 1.30 7.05 -52.49 -0.37 0.93 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.14 1.38 7.65 -52.49 -0.40 0.98 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -31.27 361.65 -8.87 -40.13 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.40 Total: 3.95 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.92 Total: -6.11 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.36 Total: -34.26 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.18 Total: -22.62 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.27 -8.87 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.361 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds