Wall clock time and date at job start Tue Mar 31 2020 14:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47458 * 2 1 4 4 N 1.46501 * 109.47367 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00086 * 264.77289 * 4 3 2 6 6 H 1.08004 * 120.00061 * 138.85667 * 5 4 3 7 7 C 1.38953 * 120.00119 * 318.85383 * 5 4 3 8 8 N 1.31415 * 119.99638 * 341.82612 * 7 5 4 9 9 Si 1.86794 * 119.99877 * 161.82803 * 7 5 4 10 10 H 1.48497 * 109.47229 * 90.00231 * 9 7 5 11 11 H 1.48499 * 109.46881 * 209.99798 * 9 7 5 12 12 H 1.48500 * 109.47443 * 329.99737 * 9 7 5 13 13 C 1.34781 * 119.99614 * 84.77145 * 4 3 2 14 14 O 1.21293 * 119.99481 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00217 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.47446 * 180.02562 * 15 13 4 17 17 C 1.50697 * 109.47773 * 180.02562 * 16 15 13 18 18 O 1.21267 * 119.99284 * 0.02562 * 17 16 15 19 19 C 1.47086 * 120.00506 * 180.02562 * 17 16 15 20 20 C 1.39903 * 120.15307 * 359.72060 * 19 17 16 21 21 C 1.37818 * 119.83513 * 179.81114 * 20 19 17 22 22 C 1.38570 * 120.16014 * 0.44603 * 21 20 19 23 23 Cl 1.73589 * 119.84068 * 179.76254 * 22 21 20 24 24 C 1.38572 * 120.31752 * 359.78778 * 22 21 20 25 25 C 1.37819 * 120.15803 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47048 * 59.99231 * 1 2 3 27 27 H 1.08993 * 109.47257 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46282 * 299.99959 * 1 2 3 29 29 H 1.09008 * 109.46893 * 240.00118 * 2 1 3 30 30 H 1.08998 * 109.47048 * 120.00769 * 2 1 3 31 31 H 1.09000 * 109.46872 * 60.00439 * 3 2 1 32 32 H 1.08998 * 109.47619 * 300.00420 * 3 2 1 33 33 H 0.97001 * 119.99339 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.47120 * 60.00152 * 15 13 4 35 35 H 1.09001 * 109.47710 * 300.00619 * 15 13 4 36 36 H 1.09000 * 109.46617 * 59.99851 * 16 15 13 37 37 H 1.09001 * 109.47141 * 300.00931 * 16 15 13 38 38 H 1.07999 * 120.08054 * 0.02611 * 20 19 17 39 39 H 1.07994 * 119.91983 * 180.18732 * 21 20 19 40 40 H 1.08000 * 119.91779 * 179.97438 * 24 22 21 41 41 H 1.07997 * 120.07481 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.5503 1.1815 6 1 5.0712 0.9480 1.3521 7 6 3.7542 2.4348 2.1600 8 7 2.9287 3.4076 1.8451 9 14 4.3402 2.2409 3.9230 10 1 5.5849 3.0266 4.1202 11 1 3.2910 2.7349 4.8505 12 1 4.6107 0.8073 4.2000 13 6 4.1784 1.3361 -1.1633 14 8 5.3914 1.3357 -1.1638 15 6 3.4244 1.2168 -2.4626 16 6 4.4180 1.1105 -3.6211 17 6 3.6640 0.9918 -4.9205 18 8 2.4514 0.9927 -4.9200 19 6 4.3989 0.8749 -6.1893 20 6 5.7979 0.8794 -6.1941 21 6 6.4798 0.7655 -7.3864 22 6 5.7831 0.6561 -8.5792 23 17 6.6503 0.5193 -10.0766 24 6 4.3973 0.6559 -8.5824 25 6 3.7022 0.7641 -7.3973 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 2.6234 4.0248 2.5284 34 1 2.7973 2.0977 -2.6010 35 1 2.7980 0.3252 -2.4387 36 1 5.0447 0.2295 -3.4825 37 1 5.0448 2.0020 -3.6452 38 1 6.3421 0.9684 -5.2656 39 1 7.5597 0.7658 -7.3914 40 1 3.8609 0.5706 -9.5158 41 1 2.6222 0.7642 -7.4014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060556271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:07 Heat of formation + Delta-G solvation = -81.157029 kcal Electronic energy + Delta-G solvation = -24156.064717 eV Core-core repulsion = 20446.901210 eV Total energy + Delta-G solvation = -3709.163507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30002 -40.38674 -39.36034 -37.46482 -37.13021 -34.71545 -33.81900 -32.96815 -32.13708 -32.06131 -28.19671 -27.06875 -25.87897 -24.29128 -23.52494 -22.45925 -20.98513 -20.30498 -18.87461 -18.54107 -17.83966 -17.15036 -16.93267 -16.73418 -16.44709 -16.04050 -15.56688 -15.46134 -15.37212 -15.10027 -14.62882 -14.54428 -14.25983 -14.20007 -13.72582 -13.37616 -13.32482 -13.11339 -12.96560 -12.89665 -12.61089 -12.54685 -12.49481 -12.29477 -12.12858 -12.03219 -11.97815 -11.85654 -11.47359 -10.88479 -10.80287 -10.33350 -10.16627 -9.85608 -9.37128 -8.32309 -6.09023 -0.57738 0.22503 1.00391 1.24720 1.38353 1.41536 1.54012 2.06507 2.29925 2.60811 2.75966 3.02218 3.24523 3.65223 3.80099 3.85100 4.05629 4.12382 4.16478 4.17940 4.21771 4.35500 4.42659 4.55776 4.58954 4.67421 4.78681 4.89601 4.91640 4.97735 5.02504 5.08054 5.09928 5.14950 5.25687 5.28397 5.39932 5.48180 5.58327 5.61463 6.25344 6.42232 6.55996 7.19625 7.48536 8.08833 8.71476 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.002441 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.329335 B =11468.491547 C =12409.565827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.111 3.889 4 N -0.456 5.456 5 C -0.340 4.340 6 H 0.064 0.936 7 C 0.002 3.998 8 N -0.893 5.893 9 Si 0.980 3.020 10 H -0.278 1.278 11 H -0.269 1.269 12 H -0.266 1.266 13 C 0.450 3.550 14 O -0.622 6.622 15 C -0.113 4.113 16 C -0.142 4.142 17 C 0.407 3.593 18 O -0.477 6.477 19 C -0.176 4.176 20 C -0.057 4.057 21 C -0.124 4.124 22 C -0.012 4.012 23 Cl -0.059 7.059 24 C -0.123 4.123 25 C -0.055 4.055 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.272 0.728 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 -5.961 -19.139 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.012 4.012 4 N -0.175 5.175 5 C -0.468 4.468 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.530 5.530 9 Si 0.804 3.196 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.190 1.190 13 C 0.240 3.760 14 O -0.508 6.508 15 C -0.153 4.153 16 C -0.180 4.180 17 C 0.287 3.713 18 O -0.354 6.354 19 C -0.177 4.177 20 C -0.075 4.075 21 C -0.142 4.142 22 C -0.039 4.039 23 Cl -0.030 7.030 24 C -0.141 4.141 25 C -0.073 4.073 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.016 -5.806 -19.154 20.015 hybrid contribution 0.436 0.249 0.933 1.060 sum 0.420 -5.557 -18.220 19.054 Atomic orbital electron populations 1.21633 0.93489 1.02411 1.02051 1.21879 0.97324 0.96614 1.01237 1.21587 0.80430 0.96501 1.02713 1.43733 1.05810 1.63166 1.04771 1.19341 1.12300 1.22235 0.92936 0.91835 1.26174 0.96985 0.92869 1.03981 1.70005 1.34028 1.13752 1.35263 0.85147 0.78063 0.78871 0.77542 1.20373 1.19408 1.18998 1.21171 0.87973 0.80537 0.86299 1.90457 1.15811 1.56748 1.87835 1.21328 0.98473 1.04297 0.91240 1.21713 0.99062 1.06152 0.91025 1.22591 0.88479 0.70027 0.90208 1.90507 1.17066 1.38048 1.89761 1.20597 0.95152 1.07424 0.94575 1.21711 0.92519 0.93840 0.99460 1.21301 1.01980 1.00867 0.90059 1.21444 0.92960 1.01495 0.87986 1.98394 1.76526 1.95991 1.32066 1.21237 0.91987 1.01252 0.99649 1.21503 1.01291 0.93967 0.90584 0.91974 0.91095 0.92991 0.92353 0.93307 0.90245 0.92323 0.91828 0.89660 0.88726 0.86956 0.87510 0.82660 0.82302 0.82323 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.17 16 2 C -0.13 -4.75 6.17 30.59 0.19 -4.56 16 3 C 0.11 4.89 4.69 86.38 0.41 5.29 16 4 N -0.46 -23.52 2.50 -635.55 -1.59 -25.11 16 5 C -0.34 -19.28 8.84 84.04 0.74 -18.53 16 6 H 0.06 3.81 7.82 -2.91 -0.02 3.78 16 7 C 0.00 0.12 4.95 84.93 0.42 0.54 16 8 N -0.89 -48.85 11.61 21.66 0.25 -48.60 16 9 Si 0.98 42.51 29.59 68.60 2.03 44.54 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 13 C 0.45 21.95 7.59 87.65 0.67 22.61 16 14 O -0.62 -34.08 15.89 -3.07 -0.05 -34.13 16 15 C -0.11 -4.18 3.59 29.85 0.11 -4.07 16 16 C -0.14 -4.24 3.60 29.85 0.11 -4.14 16 17 C 0.41 10.94 7.11 28.01 0.20 11.14 16 18 O -0.48 -15.05 15.97 -2.99 -0.05 -15.10 16 19 C -0.18 -3.82 5.87 -20.15 -0.12 -3.94 16 20 C -0.06 -1.04 9.47 22.57 0.21 -0.82 16 21 C -0.12 -1.94 9.81 22.25 0.22 -1.72 16 22 C -0.01 -0.19 6.33 22.43 0.14 -0.05 16 23 Cl -0.06 -0.85 28.95 -2.72 -0.08 -0.93 16 24 C -0.12 -1.92 9.81 22.25 0.22 -1.70 16 25 C -0.06 -1.05 9.60 22.57 0.22 -0.83 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.99 6.60 -2.38 -0.02 1.97 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 3.88 5.76 -2.39 -0.01 3.87 16 32 H 0.06 2.41 6.66 -2.39 -0.02 2.40 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.09 3.15 7.37 -2.38 -0.02 3.13 16 35 H 0.09 3.26 6.49 -2.39 -0.02 3.24 16 36 H 0.11 3.18 8.05 -2.39 -0.02 3.17 16 37 H 0.11 3.18 8.04 -2.39 -0.02 3.16 16 38 H 0.16 2.54 7.05 -2.91 -0.02 2.52 16 39 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.15 2.65 7.65 -2.91 -0.02 2.63 16 Total: -1.00 -68.32 361.65 6.00 -62.32 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.04 Total: 20.97 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.44 Total: -3.95 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.34 Total: -73.71 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.10 Total: -49.23 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -68.32 6.00 -62.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.836 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds