Wall clock time and date at job start Tue Mar 31 2020 13:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47436 * 2 1 4 4 C 1.53001 * 109.47282 * 120.00248 * 2 1 3 5 5 N 1.46497 * 109.47087 * 65.35349 * 4 2 1 6 6 C 1.46502 * 119.99587 * 273.29136 * 5 4 2 7 7 C 1.50699 * 109.47040 * 274.19521 * 6 5 4 8 8 H 1.07995 * 119.99950 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99765 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00085 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99879 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47165 * 59.99338 * 11 9 7 13 13 H 1.48494 * 109.46899 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46700 * 299.99136 * 11 9 7 15 15 S 1.65597 * 120.00311 * 93.29380 * 5 4 2 16 16 O 1.42106 * 106.40063 * 336.45795 * 15 5 4 17 17 O 1.42094 * 106.40530 * 203.53958 * 15 5 4 18 18 C 1.76198 * 107.21951 * 89.99718 * 15 5 4 19 19 C 1.38703 * 120.30962 * 270.02652 * 18 15 5 20 20 C 1.38488 * 118.50510 * 179.97438 * 19 18 15 21 21 C 1.39459 * 119.05261 * 359.97438 * 20 19 18 22 22 C 1.43199 * 119.73415 * 180.02562 * 21 20 19 23 23 N 9.66203 * 121.37296 * 134.45566 * 2 1 3 24 24 N 1.32784 * 120.52390 * 359.97438 * 21 20 19 25 25 C 1.31583 * 121.62473 * 0.02562 * 24 21 20 26 26 H 1.09004 * 109.46952 * 52.43319 * 1 2 3 27 27 H 1.08994 * 109.47052 * 172.43505 * 1 2 3 28 28 H 1.09004 * 109.46877 * 292.43730 * 1 2 3 29 29 H 1.09003 * 109.46859 * 240.00278 * 2 1 3 30 30 H 1.08992 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46906 * 300.00249 * 3 2 1 32 32 H 1.08992 * 109.47033 * 59.99827 * 3 2 1 33 33 H 1.09001 * 109.46984 * 305.35048 * 4 2 1 34 34 H 1.08997 * 109.46971 * 185.35392 * 4 2 1 35 35 H 1.08998 * 109.47554 * 34.19636 * 6 5 4 36 36 H 1.09004 * 109.47072 * 154.19444 * 6 5 4 37 37 H 0.97001 * 120.00097 * 180.02562 * 10 9 7 38 38 H 1.07993 * 120.74525 * 359.97438 * 19 18 15 39 39 H 1.08001 * 120.47547 * 180.02562 * 20 19 18 40 40 H 1.07996 * 119.54940 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6598 -2.1347 1.1865 6 6 0.3518 -2.5642 1.6874 7 6 0.4412 -2.8210 3.1696 8 1 1.3784 -2.6782 3.6868 9 6 -0.6736 -3.2384 3.8654 10 7 -1.8151 -3.4118 3.2357 11 14 -0.5630 -3.5561 5.7029 12 1 -0.1528 -2.3091 6.3971 13 1 -1.8888 -3.9915 6.2106 14 1 0.4404 -4.6198 5.9617 15 16 2.7084 -3.2468 0.5494 16 8 3.5787 -2.5287 -0.3145 17 8 1.9158 -4.3441 0.1171 18 6 3.7041 -3.8438 1.8747 19 6 4.8962 -3.2110 2.1948 20 6 5.6491 -3.7114 3.2439 21 6 5.1848 -4.8279 3.9386 22 6 5.9515 -5.3571 5.0262 23 7 6.5601 -5.7775 5.8884 24 7 4.0371 -5.4035 3.6003 25 6 3.3029 -4.9479 2.6079 26 1 -0.3633 0.6266 -0.8146 27 1 -0.3633 -1.0187 -0.1353 28 1 -0.3633 0.3923 0.9499 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6005 -0.2658 2.1366 34 1 3.1258 -0.6390 1.2984 35 1 -0.3844 -1.7830 1.4978 36 1 0.0500 -3.4792 1.1776 37 1 -2.5994 -3.7051 3.7252 38 1 5.2295 -2.3475 1.6384 39 1 6.5822 -3.2431 3.5205 40 1 2.3746 -5.4418 2.3616 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169108617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:01 Heat of formation + Delta-G solvation = -9.768078 kcal Electronic energy + Delta-G solvation = -25753.939706 eV Core-core repulsion = 22082.208313 eV Total energy + Delta-G solvation = -3671.731393 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41171 -37.31431 -36.85196 -36.75492 -35.47011 -33.78242 -32.92792 -32.23917 -31.88232 -27.79682 -26.77127 -25.35777 -25.04224 -23.96467 -22.34065 -20.08408 -19.71988 -18.88463 -17.42023 -17.00366 -16.93092 -16.41441 -15.72224 -15.01374 -14.86190 -14.59003 -14.54088 -14.26836 -13.96309 -13.50332 -13.46533 -13.10320 -12.99612 -12.90398 -12.72502 -12.47431 -12.17301 -11.91213 -11.69863 -11.67338 -11.42936 -11.30806 -11.24328 -11.10616 -10.92813 -10.67498 -10.35553 -10.31118 -10.24098 -10.09505 -9.86951 -9.77333 -9.54418 -8.55493 -8.16764 -6.19599 -4.26979 0.02666 0.81119 1.01018 2.28158 2.50111 3.22754 3.24956 3.28543 3.31056 3.39397 3.67045 4.09016 4.30774 4.34760 4.50538 4.68481 4.82330 5.06280 5.13704 5.15747 5.22277 5.34619 5.44474 5.48254 5.55697 5.74872 5.88931 5.97746 6.09772 6.14944 6.20799 6.26567 6.35905 6.47080 6.65204 6.79226 7.08295 7.22024 7.29994 7.49383 7.50581 7.75835 8.04062 8.76967 9.40515 10.87817 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.006421 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.450745 B = 4359.702440 C = 6203.726355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.135 3.865 5 N -0.973 5.973 6 C 0.235 3.765 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.072 3.928 10 N -0.885 5.885 11 Si 0.885 3.115 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.273 1.273 15 S 2.689 3.311 16 O -0.968 6.968 17 O -0.947 6.947 18 C -0.701 4.701 19 C 0.024 3.976 20 C -0.148 4.148 21 C 0.233 3.767 22 C 0.268 3.732 23 N -0.384 5.384 24 N -0.464 5.464 25 C 0.228 3.772 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.266 0.734 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.156 5.869 -4.943 12.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.201 4.201 4 C 0.009 3.991 5 N -0.813 5.813 6 C 0.113 3.887 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.132 4.132 10 N -0.522 5.522 11 Si 0.713 3.287 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.198 1.198 15 S 2.775 3.225 16 O -0.958 6.958 17 O -0.937 6.937 18 C -0.786 4.786 19 C -0.003 4.003 20 C -0.172 4.172 21 C 0.094 3.906 22 C -0.050 4.050 23 N -0.061 5.061 24 N -0.174 5.174 25 C 0.068 3.932 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.668 4.138 -3.929 12.098 hybrid contribution 0.170 0.605 1.274 1.421 sum 10.838 4.743 -2.655 12.124 Atomic orbital electron populations 1.21952 0.94627 1.02605 1.01319 1.21584 0.96940 0.95948 0.99112 1.21768 1.00715 0.95957 1.01636 1.21238 0.98545 0.80816 0.98510 1.57396 1.29115 1.16078 1.78686 1.19527 0.77503 0.97566 0.94060 1.21464 0.96515 1.47121 0.93568 0.92305 1.24867 0.95214 0.94931 0.98236 1.69896 1.00549 1.45513 1.36290 0.86752 0.77603 0.78920 0.85453 1.20262 1.21046 1.19841 1.02255 0.72886 0.73644 0.73745 1.93538 1.67405 1.72859 1.61980 1.93583 1.67863 1.53156 1.79114 1.32734 1.12288 1.08933 1.24669 1.21314 0.90221 0.96296 0.92437 1.22014 1.01976 0.96416 0.96761 1.16657 0.90997 0.92312 0.90606 1.25025 0.93346 0.93718 0.92898 1.81231 1.09210 1.06735 1.08916 1.67740 1.03857 1.30488 1.15347 1.22708 0.96317 0.89013 0.85114 0.93699 0.91369 0.92295 0.90898 0.92793 0.92828 0.92637 0.89618 0.91707 0.92473 0.92835 0.92380 0.82213 0.83014 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 7.84 37.16 0.29 -1.85 16 2 C -0.12 -1.58 3.12 -90.62 -0.28 -1.86 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.14 1.98 4.83 -4.04 -0.02 1.96 16 5 N -0.97 -17.06 2.67 -115.66 -0.31 -17.37 16 6 C 0.23 5.08 4.70 -5.19 -0.02 5.06 16 7 C -0.55 -13.04 9.39 -34.44 -0.32 -13.37 16 8 H 0.06 1.37 7.81 -52.49 -0.41 0.96 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.88 -23.69 13.29 55.43 0.74 -22.95 16 11 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 15 S 2.69 45.40 5.66 -107.50 -0.61 44.79 16 16 O -0.97 -16.11 16.23 -57.17 -0.93 -17.03 16 17 O -0.95 -18.81 15.86 -57.17 -0.91 -19.72 16 18 C -0.70 -10.58 6.00 -39.32 -0.24 -10.81 16 19 C 0.02 0.29 9.64 -39.32 -0.38 -0.09 16 20 C -0.15 -1.62 9.80 -39.03 -0.38 -2.00 16 21 C 0.23 3.20 6.58 -85.08 -0.56 2.64 16 22 C 0.27 3.71 15.53 -22.47 -0.35 3.36 16 23 N -0.38 -5.77 18.54 41.84 0.78 -4.99 16 24 N -0.46 -7.54 10.28 -11.16 -0.11 -7.65 16 25 C 0.23 3.74 10.68 -17.57 -0.19 3.55 16 26 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.07 1.12 6.22 -51.93 -0.32 0.79 16 28 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 29 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 34 H 0.06 0.79 7.67 -51.93 -0.40 0.40 16 35 H 0.06 1.27 5.48 -51.93 -0.28 0.98 16 36 H 0.05 1.28 6.93 -51.93 -0.36 0.92 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.16 1.45 7.70 -52.49 -0.40 1.04 16 39 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.19 3.13 7.62 -52.49 -0.40 2.73 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -29.39 358.64 -8.26 -37.65 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.08 Total: -0.37 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.21 Total: -12.89 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 1.09 Total: -52.97 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.83 Total: -36.75 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 45.40 SS G_CDS: -0.61 Total: 44.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.39 -8.26 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169108617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.881 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds