Wall clock time and date at job start Tue Mar 31 2020 13:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47436 * 2 1 4 4 C 1.53001 * 109.47282 * 120.00248 * 2 1 3 5 5 N 1.46497 * 109.47087 * 65.35349 * 4 2 1 6 6 C 1.46502 * 119.99587 * 273.29136 * 5 4 2 7 7 C 1.50699 * 109.47040 * 274.19521 * 6 5 4 8 8 H 1.07995 * 119.99950 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99765 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00085 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99879 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47165 * 59.99338 * 11 9 7 13 13 H 1.48494 * 109.46899 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46700 * 299.99136 * 11 9 7 15 15 S 1.65597 * 120.00311 * 93.29380 * 5 4 2 16 16 O 1.42106 * 106.40063 * 336.45795 * 15 5 4 17 17 O 1.42094 * 106.40530 * 203.53958 * 15 5 4 18 18 C 1.76198 * 107.21951 * 89.99718 * 15 5 4 19 19 C 1.38703 * 120.30962 * 270.02652 * 18 15 5 20 20 C 1.38488 * 118.50510 * 179.97438 * 19 18 15 21 21 C 1.39459 * 119.05261 * 359.97438 * 20 19 18 22 22 C 1.43199 * 119.73415 * 180.02562 * 21 20 19 23 23 N 9.66203 * 121.37296 * 134.45566 * 2 1 3 24 24 N 1.32784 * 120.52390 * 359.97438 * 21 20 19 25 25 C 1.31583 * 121.62473 * 0.02562 * 24 21 20 26 26 H 1.09004 * 109.46952 * 52.43319 * 1 2 3 27 27 H 1.08994 * 109.47052 * 172.43505 * 1 2 3 28 28 H 1.09004 * 109.46877 * 292.43730 * 1 2 3 29 29 H 1.09003 * 109.46859 * 240.00278 * 2 1 3 30 30 H 1.08992 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46906 * 300.00249 * 3 2 1 32 32 H 1.08992 * 109.47033 * 59.99827 * 3 2 1 33 33 H 1.09001 * 109.46984 * 305.35048 * 4 2 1 34 34 H 1.08997 * 109.46971 * 185.35392 * 4 2 1 35 35 H 1.08998 * 109.47554 * 34.19636 * 6 5 4 36 36 H 1.09004 * 109.47072 * 154.19444 * 6 5 4 37 37 H 0.97001 * 120.00097 * 180.02562 * 10 9 7 38 38 H 1.07993 * 120.74525 * 359.97438 * 19 18 15 39 39 H 1.08001 * 120.47547 * 180.02562 * 20 19 18 40 40 H 1.07996 * 119.54940 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6598 -2.1347 1.1865 6 6 0.3518 -2.5642 1.6874 7 6 0.4412 -2.8210 3.1696 8 1 1.3784 -2.6782 3.6868 9 6 -0.6736 -3.2384 3.8654 10 7 -1.8151 -3.4118 3.2357 11 14 -0.5630 -3.5561 5.7029 12 1 -0.1528 -2.3091 6.3971 13 1 -1.8888 -3.9915 6.2106 14 1 0.4404 -4.6198 5.9617 15 16 2.7084 -3.2468 0.5494 16 8 3.5787 -2.5287 -0.3145 17 8 1.9158 -4.3441 0.1171 18 6 3.7041 -3.8438 1.8747 19 6 4.8962 -3.2110 2.1948 20 6 5.6491 -3.7114 3.2439 21 6 5.1848 -4.8279 3.9386 22 6 5.9515 -5.3571 5.0262 23 7 6.5601 -5.7775 5.8884 24 7 4.0371 -5.4035 3.6003 25 6 3.3029 -4.9479 2.6079 26 1 -0.3633 0.6266 -0.8146 27 1 -0.3633 -1.0187 -0.1353 28 1 -0.3633 0.3923 0.9499 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6005 -0.2658 2.1366 34 1 3.1258 -0.6390 1.2984 35 1 -0.3844 -1.7830 1.4978 36 1 0.0500 -3.4792 1.1776 37 1 -2.5994 -3.7051 3.7252 38 1 5.2295 -2.3475 1.6384 39 1 6.5822 -3.2431 3.5205 40 1 2.3746 -5.4418 2.3616 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169108617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:00 Heat of formation + Delta-G solvation = -28.538137 kcal Electronic energy + Delta-G solvation = -25754.753637 eV Core-core repulsion = 22082.208313 eV Total energy + Delta-G solvation = -3672.545324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51178 -38.58856 -38.25999 -37.88189 -36.88654 -35.31364 -34.02540 -33.86588 -32.97546 -29.42779 -27.85030 -26.52060 -26.40831 -25.05497 -24.02140 -21.20096 -20.80531 -20.16347 -18.73759 -18.55372 -18.17668 -18.00916 -17.12176 -16.34667 -16.05647 -15.97296 -15.77305 -15.41075 -15.12482 -14.79633 -14.56672 -14.28132 -14.19407 -14.12000 -14.01231 -13.96685 -13.55783 -13.17499 -13.09934 -13.01702 -12.92633 -12.76293 -12.65381 -12.43673 -12.33532 -12.19838 -11.82307 -11.63422 -11.44642 -11.42294 -11.32978 -10.94502 -10.63132 -10.49769 -9.65250 -8.14061 -6.24786 -1.08152 -0.52371 -0.01690 1.18212 1.37981 1.40149 1.44237 1.47951 2.04899 2.19425 2.42301 2.54524 2.78457 3.18020 3.20800 3.40165 3.73987 3.75914 3.95137 3.98508 4.16978 4.30236 4.41286 4.44725 4.49987 4.71518 4.83808 4.94433 5.02951 5.09739 5.17313 5.20900 5.23382 5.35337 5.45285 5.54497 5.62403 5.66853 5.81375 5.99547 5.99827 6.15933 6.39235 6.87151 7.44695 8.93063 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.006421 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.450745 B = 4359.702440 C = 6203.726355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.137 4.137 4 C 0.125 3.875 5 N -0.977 5.977 6 C 0.250 3.750 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.024 3.976 10 N -0.920 5.920 11 Si 0.935 3.065 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.278 1.278 15 S 2.701 3.299 16 O -0.962 6.962 17 O -0.986 6.986 18 C -0.707 4.707 19 C 0.033 3.967 20 C -0.119 4.119 21 C 0.220 3.780 22 C 0.284 3.716 23 N -0.406 5.406 24 N -0.491 5.491 25 C 0.208 3.792 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.023 0.977 37 H 0.264 0.736 38 H 0.199 0.801 39 H 0.202 0.798 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.067 8.035 -4.537 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.195 4.195 4 C 0.000 4.000 5 N -0.816 5.816 6 C 0.127 3.873 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.176 4.176 10 N -0.560 5.560 11 Si 0.762 3.238 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.203 1.203 15 S 2.790 3.210 16 O -0.952 6.952 17 O -0.977 6.977 18 C -0.795 4.795 19 C 0.006 3.994 20 C -0.142 4.142 21 C 0.083 3.917 22 C -0.034 4.034 23 N -0.082 5.082 24 N -0.202 5.202 25 C 0.048 3.952 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.216 0.784 39 H 0.219 0.781 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.586 6.336 -3.542 15.404 hybrid contribution -0.628 -0.069 1.114 1.281 sum 12.958 6.266 -2.428 14.597 Atomic orbital electron populations 1.21919 0.95800 1.01103 1.01580 1.21597 0.95967 0.97821 0.98253 1.21733 1.01661 0.93693 1.02444 1.21556 1.00559 0.79010 0.98904 1.57259 1.27961 1.17759 1.78601 1.19046 0.79457 0.96040 0.92743 1.21791 0.96269 1.45114 0.94558 0.91603 1.25515 0.95270 0.95447 1.01385 1.70003 1.01156 1.47380 1.37467 0.85958 0.77109 0.78796 0.81959 1.19250 1.21351 1.20314 1.01636 0.72658 0.72832 0.73902 1.93534 1.66881 1.72649 1.62159 1.93536 1.69229 1.54601 1.80330 1.32372 1.13675 1.09293 1.24208 1.21849 0.88497 0.96615 0.92404 1.22506 1.02814 0.94262 0.94572 1.16887 0.90474 0.93377 0.90994 1.24974 0.92791 0.93110 0.92492 1.81255 1.10115 1.07315 1.09562 1.67611 1.05224 1.31672 1.15727 1.22454 0.96433 0.90091 0.86211 0.91939 0.94204 0.93041 0.91654 0.91232 0.91892 0.92047 0.89956 0.88432 0.93344 0.95882 0.92652 0.78416 0.78060 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 7.84 71.98 0.56 -3.66 16 2 C -0.12 -2.97 3.12 -10.79 -0.03 -3.00 16 3 C -0.14 -2.57 9.19 71.98 0.66 -1.91 16 4 C 0.12 3.41 4.83 86.38 0.42 3.83 16 5 N -0.98 -33.95 2.67 -519.85 -1.39 -35.33 16 6 C 0.25 11.18 4.70 85.63 0.40 11.58 16 7 C -0.54 -25.90 9.39 25.60 0.24 -25.66 16 8 H 0.07 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.02 1.25 5.46 84.66 0.46 1.71 16 10 N -0.92 -50.82 13.29 21.45 0.28 -50.53 16 11 Si 0.94 41.65 29.54 68.60 2.03 43.68 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 S 2.70 89.75 5.66 -56.49 -0.32 89.43 16 16 O -0.96 -29.87 16.23 -128.00 -2.08 -31.95 16 17 O -0.99 -40.75 15.86 -128.00 -2.03 -42.78 16 18 C -0.71 -20.24 6.00 22.44 0.13 -20.11 16 19 C 0.03 0.64 9.64 22.44 0.22 0.86 16 20 C -0.12 -2.03 9.80 22.62 0.22 -1.81 16 21 C 0.22 5.51 6.58 40.54 0.27 5.78 16 22 C 0.28 7.24 15.53 88.33 1.37 8.61 16 23 N -0.41 -11.45 18.54 19.00 0.35 -11.10 16 24 N -0.49 -15.67 10.28 -189.22 -1.94 -17.62 16 25 C 0.21 6.87 10.68 84.78 0.91 7.77 16 26 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 27 H 0.04 1.35 6.22 -2.39 -0.01 1.33 16 28 H 0.05 1.53 8.06 -2.38 -0.02 1.51 16 29 H 0.06 1.78 8.01 -2.39 -0.02 1.76 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 34 H 0.10 2.01 7.67 -2.39 -0.02 1.99 16 35 H 0.05 2.24 5.48 -2.39 -0.01 2.23 16 36 H 0.02 1.17 6.93 -2.39 -0.02 1.16 16 37 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.20 2.37 7.70 -2.91 -0.02 2.35 16 39 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.17 6.03 7.62 -2.91 -0.02 6.01 16 Total: -1.00 -65.56 358.64 1.80 -63.77 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.06 Total: 8.45 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 5.83 Total: -16.01 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -2.69 Total: -114.58 kcal Atomic # 8 Polarization: -70.62 SS G_CDS: -4.11 Total: -74.73 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 89.75 SS G_CDS: -0.32 Total: 89.43 kcal Total: -65.56 1.80 -63.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169108617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.228 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds