Wall clock time and date at job start Tue Mar 31 2020 14:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21716 * 120.00304 * 0.02562 * 14 13 3 16 16 C 1.46247 * 119.99962 * 180.02562 * 14 13 3 17 17 C 1.35002 * 119.99648 * 179.97438 * 16 14 13 18 18 C 1.46949 * 119.99240 * 180.02562 * 17 16 14 19 19 C 1.39931 * 120.21209 * 0.02562 * 18 17 16 20 20 C 1.37854 * 119.86557 * 179.97438 * 19 18 17 21 21 Cl 1.73601 * 119.84976 * 179.97438 * 20 19 18 22 22 C 1.38660 * 120.29481 * 359.97438 * 20 19 18 23 23 C 1.38124 * 120.42511 * 0.03191 * 22 20 19 24 24 C 1.38595 * 120.12414 * 359.69046 * 23 22 20 25 25 O 1.35714 * 120.15058 * 180.30314 * 24 23 22 26 26 C 1.42898 * 116.99821 * 0.25162 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08001 * 119.99599 * 0.02562 * 16 14 13 35 35 H 1.07993 * 120.00568 * 0.02562 * 17 16 14 36 36 H 1.07996 * 120.06154 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.78918 * 179.97438 * 22 20 19 38 38 H 1.07999 * 119.93810 * 179.97438 * 23 22 20 39 39 H 1.08998 * 109.47359 * 300.00462 * 26 25 24 40 40 H 1.09002 * 109.46889 * 60.00196 * 26 25 24 41 41 H 1.08996 * 109.47366 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3420 2.6325 -0.4307 16 6 0.0481 3.3178 -2.6167 17 6 -1.1714 3.8852 -2.7321 18 6 -1.5605 4.5413 -3.9881 19 6 -0.6706 4.5800 -5.0673 20 6 -1.0432 5.1969 -6.2425 21 17 0.0614 5.2453 -7.5809 22 6 -2.2962 5.7789 -6.3602 23 6 -3.1840 5.7479 -5.3026 24 6 -2.8298 5.1273 -4.1150 25 8 -3.7040 5.0911 -3.0776 26 6 -4.9767 5.7086 -3.2800 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4816 2.1128 33 1 2.2720 2.1232 -1.9977 34 1 0.7377 3.3457 -3.4474 35 1 -1.8610 3.8570 -1.9015 36 1 0.3058 4.1268 -4.9800 37 1 -2.5794 6.2604 -7.2845 38 1 -4.1578 6.2040 -5.4027 39 1 -4.8359 6.7652 -3.5077 40 1 -5.4881 5.2229 -4.1111 41 1 -5.5771 5.6082 -2.3759 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183896833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:55 Heat of formation + Delta-G solvation = -59.827474 kcal Electronic energy + Delta-G solvation = -24119.516450 eV Core-core repulsion = 20411.277862 eV Total energy + Delta-G solvation = -3708.238589 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36764 -40.70469 -38.78093 -37.36926 -37.08476 -35.06316 -34.38527 -33.23158 -31.15466 -30.83535 -29.40386 -28.11233 -25.74321 -24.48031 -23.36980 -22.81454 -21.50651 -20.65577 -19.36535 -18.95497 -18.02229 -17.61100 -17.16526 -16.98624 -16.76271 -16.25896 -16.03856 -15.61578 -15.14135 -14.98258 -14.86846 -14.63713 -14.43690 -14.08588 -13.76233 -13.65131 -13.62612 -13.14561 -12.98306 -12.92429 -12.76723 -12.52130 -12.40170 -12.23308 -11.86446 -11.81011 -11.77961 -11.40233 -11.25705 -11.23244 -10.86516 -10.75418 -9.83713 -9.66954 -8.95015 -8.37988 -6.43323 -0.54492 0.14612 0.91059 1.15403 1.26903 1.34930 1.45359 2.23528 2.26336 2.34438 2.53144 2.70075 2.98041 3.52433 3.64669 3.93973 4.00002 4.11557 4.23183 4.24729 4.32871 4.35991 4.41542 4.43499 4.52786 4.63479 4.73630 4.82173 4.84956 5.00006 5.02133 5.12384 5.12694 5.22195 5.32308 5.38219 5.43429 5.52838 5.53581 5.68608 6.16516 6.28699 6.58654 6.92666 7.20082 7.49518 8.77293 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.002823 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.631093 B = 9915.239261 C =11248.293806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.021 0.979 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.259 1.259 11 H -0.293 1.293 12 H -0.261 1.261 13 N -0.695 5.695 14 C 0.532 3.468 15 O -0.589 6.589 16 C -0.210 4.210 17 C -0.010 4.010 18 C -0.110 4.110 19 C -0.060 4.060 20 C -0.084 4.084 21 Cl -0.068 7.068 22 C -0.052 4.052 23 C -0.193 4.193 24 C 0.149 3.851 25 O -0.329 6.329 26 C 0.013 3.987 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.270 0.730 33 H 0.407 0.593 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.334 10.700 -18.775 30.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.144 3.856 4 H 0.039 0.961 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.186 1.186 13 N -0.343 5.343 14 C 0.323 3.677 15 O -0.473 6.473 16 C -0.230 4.230 17 C -0.030 4.030 18 C -0.111 4.111 19 C -0.078 4.078 20 C -0.111 4.111 21 Cl -0.039 7.039 22 C -0.071 4.071 23 C -0.212 4.212 24 C 0.102 3.898 25 O -0.242 6.242 26 C -0.080 4.080 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.171 0.829 35 H 0.141 0.859 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.189 0.811 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.578 10.532 -17.926 29.965 hybrid contribution 0.541 -0.333 0.460 0.785 sum -21.037 10.199 -17.466 29.183 Atomic orbital electron populations 1.21758 0.95252 1.00504 1.01559 1.22200 0.95815 0.98442 1.01059 1.18788 0.93203 0.89708 0.83923 0.96071 1.21302 0.90338 1.38534 1.07004 0.92528 1.25545 0.95747 0.95879 0.99842 1.69973 1.10250 1.46193 1.30865 0.86036 0.79281 0.79996 0.78339 1.18427 1.21991 1.18597 1.45914 1.15650 1.55740 1.17015 1.18746 0.81684 0.78562 0.88738 1.90754 1.52475 1.61843 1.42239 1.22942 0.99067 1.03690 0.97326 1.22021 0.95190 0.90696 0.95106 1.18238 0.93162 1.05051 0.94645 1.21280 0.99833 0.96543 0.90152 1.20765 0.93647 1.06292 0.90357 1.98380 1.62683 1.97565 1.45255 1.21286 0.90344 0.95564 0.99898 1.21443 1.03007 1.04857 0.91865 1.19424 0.89040 0.93582 0.87788 1.86089 1.26827 1.74472 1.36800 1.23484 0.80997 0.98327 1.05240 0.92820 0.94506 0.92236 0.93766 0.91256 0.92065 0.75790 0.82891 0.85930 0.83139 0.81851 0.81058 0.90701 0.90632 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.51 71.98 0.61 -4.74 16 2 C -0.14 -6.06 5.11 30.59 0.16 -5.91 16 3 C 0.25 12.08 1.83 44.24 0.08 12.16 16 4 H 0.02 1.16 6.63 -2.39 -0.02 1.15 16 5 C -0.53 -29.69 9.31 25.60 0.24 -29.45 16 6 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 7 C 0.03 1.70 5.45 84.66 0.46 2.16 16 8 N -0.93 -56.80 13.96 21.45 0.30 -56.50 16 9 Si 0.94 45.63 24.41 68.60 1.67 47.31 16 10 H -0.26 -11.82 6.83 99.48 0.68 -11.14 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.26 -12.72 6.53 99.48 0.65 -12.07 16 13 N -0.70 -28.16 5.02 -450.52 -2.26 -30.42 16 14 C 0.53 20.56 6.30 86.32 0.54 21.10 16 15 O -0.59 -26.76 13.36 -4.40 -0.06 -26.82 16 16 C -0.21 -6.07 9.41 23.61 0.22 -5.84 16 17 C -0.01 -0.28 9.21 23.81 0.22 -0.06 16 18 C -0.11 -2.44 5.88 -20.06 -0.12 -2.56 16 19 C -0.06 -1.15 9.18 22.59 0.21 -0.94 16 20 C -0.08 -1.40 6.31 22.28 0.14 -1.26 16 21 Cl -0.07 -1.10 28.94 -2.72 -0.08 -1.18 16 22 C -0.05 -0.66 9.81 22.34 0.22 -0.44 16 23 C -0.19 -2.40 9.03 22.33 0.20 -2.20 16 24 C 0.15 2.79 6.70 22.88 0.15 2.95 16 25 O -0.33 -6.27 9.68 -90.35 -0.87 -7.15 16 26 C 0.01 0.12 9.81 113.37 1.11 1.23 16 27 H 0.05 2.13 5.64 -2.39 -0.01 2.12 16 28 H 0.04 1.57 7.84 -2.39 -0.02 1.55 16 29 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.04 2.04 3.22 -2.39 -0.01 2.03 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.41 14.43 8.52 -92.71 -0.79 13.64 16 34 H 0.15 3.41 6.07 -2.91 -0.02 3.40 16 35 H 0.12 3.84 7.09 -2.91 -0.02 3.82 16 36 H 0.15 2.65 6.17 -2.91 -0.02 2.64 16 37 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.17 0.97 6.30 -2.91 -0.02 0.95 16 39 H 0.07 0.41 7.65 -2.39 -0.02 0.39 16 40 H 0.08 0.40 7.67 -2.39 -0.02 0.38 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.69 349.27 3.36 -68.33 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.20 Total: 20.21 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.45 Total: -13.79 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -1.96 Total: -86.92 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.93 Total: -33.96 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.67 Total: 47.31 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -71.69 3.36 -68.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183896833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.506 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds