Wall clock time and date at job start Tue Mar 31 2020 14:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21717 * 119.99934 * 359.97438 * 14 13 3 16 16 C 1.46242 * 119.99862 * 179.97438 * 14 13 3 17 17 C 1.34997 * 120.00018 * 179.97438 * 16 14 13 18 18 C 1.46941 * 120.00146 * 180.02562 * 17 16 14 19 19 C 1.39921 * 120.20817 * 359.97438 * 18 17 16 20 20 C 1.37863 * 119.86998 * 179.97438 * 19 18 17 21 21 Cl 1.73602 * 119.85318 * 179.97438 * 20 19 18 22 22 C 1.38663 * 120.28993 * 0.02562 * 20 19 18 23 23 C 1.38125 * 120.42455 * 0.02562 * 22 20 19 24 24 C 1.38594 * 120.12341 * 359.69872 * 23 22 20 25 25 O 1.35707 * 120.14770 * 180.29670 * 24 23 22 26 26 C 1.42898 * 116.99964 * 0.25849 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.08001 * 119.99952 * 0.02562 * 16 14 13 35 35 H 1.08003 * 119.99888 * 359.97438 * 17 16 14 36 36 H 1.08005 * 120.06618 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.78367 * 180.02562 * 22 20 19 38 38 H 1.08009 * 119.93434 * 179.97438 * 23 22 20 39 39 H 1.08996 * 109.47603 * 180.02562 * 26 25 24 40 40 H 1.09009 * 109.47084 * 299.99549 * 26 25 24 41 41 H 1.08998 * 109.47376 * 59.99584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3420 2.6326 0.4307 16 6 0.0481 3.3177 2.6168 17 6 -1.1709 3.8860 2.7320 18 6 -1.5596 4.5429 3.9876 19 6 -0.6699 4.5815 5.0667 20 6 -1.0416 5.2002 6.2413 21 17 0.0625 5.2473 7.5802 22 6 -2.2938 5.7841 6.3583 23 6 -3.1821 5.7522 5.3010 24 6 -2.8243 5.1398 4.1103 25 8 -3.6943 5.1134 3.0692 26 6 -4.9623 5.7419 3.2672 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 0.7379 3.3462 3.4473 35 1 -1.8602 3.8585 1.9010 36 1 0.3063 4.1276 4.9797 37 1 -2.5764 6.2670 7.2822 38 1 -4.1556 6.2091 5.4010 39 1 -5.5598 5.6486 2.3604 40 1 -5.4817 5.2592 4.0952 41 1 -4.8130 6.7968 3.4975 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183896851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:57 Heat of formation + Delta-G solvation = -65.758327 kcal Electronic energy + Delta-G solvation = -24031.946649 eV Core-core repulsion = 20323.450879 eV Total energy + Delta-G solvation = -3708.495770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35821 -40.58996 -38.77651 -37.31366 -36.95253 -35.04745 -34.26725 -32.82580 -31.14677 -30.80121 -28.95751 -28.10068 -25.78288 -24.71942 -23.30909 -22.62593 -21.33229 -20.56846 -19.32533 -18.79469 -17.90569 -17.41163 -16.97625 -16.94435 -16.76289 -16.18025 -15.99801 -15.61393 -15.04749 -14.90514 -14.66869 -14.48876 -14.42393 -13.84872 -13.65988 -13.47879 -13.19114 -13.10699 -12.94303 -12.89898 -12.64833 -12.51563 -12.23881 -12.17420 -12.04952 -11.81647 -11.77372 -11.58609 -11.25781 -11.05408 -10.73207 -10.50372 -9.78589 -9.57890 -8.93909 -8.14841 -6.32394 -0.53136 0.14922 0.93102 1.15308 1.45386 1.47519 1.55172 2.24142 2.36541 2.40104 2.70769 2.72440 3.14386 3.55303 3.64986 3.95844 4.00941 4.13822 4.25279 4.35695 4.41309 4.48864 4.50317 4.57975 4.63937 4.73396 4.77256 4.82808 5.02073 5.07576 5.12679 5.23601 5.32663 5.40356 5.45518 5.53611 5.57722 5.64649 5.81366 5.96727 6.18015 6.29426 6.75558 7.03528 7.34729 7.61664 8.90512 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.002752 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.806650 B =10171.687726 C =11586.379952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.527 3.473 15 O -0.595 6.595 16 C -0.207 4.207 17 C -0.015 4.015 18 C -0.109 4.109 19 C -0.059 4.059 20 C -0.083 4.083 21 Cl -0.067 7.067 22 C -0.053 4.053 23 C -0.193 4.193 24 C 0.147 3.853 25 O -0.330 6.330 26 C 0.013 3.987 27 H 0.025 0.975 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 12.303 20.951 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.347 5.347 14 C 0.316 3.684 15 O -0.479 6.479 16 C -0.227 4.227 17 C -0.035 4.035 18 C -0.110 4.110 19 C -0.078 4.078 20 C -0.110 4.110 21 Cl -0.038 7.038 22 C -0.071 4.071 23 C -0.211 4.211 24 C 0.100 3.900 25 O -0.243 6.243 26 C -0.080 4.080 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.173 0.827 35 H 0.137 0.863 36 H 0.169 0.831 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.424 12.087 20.022 27.478 hybrid contribution 1.140 -0.118 -0.220 1.167 sum -13.285 11.969 19.802 26.681 Atomic orbital electron populations 1.21676 0.97069 0.99086 1.00218 1.21778 0.93682 0.99151 1.01306 1.18372 0.93663 0.89192 0.81384 0.98487 1.21568 0.91415 1.39030 1.06797 0.91009 1.25787 1.03394 0.94344 0.94982 1.70050 1.37157 1.38333 1.09829 0.85419 0.79017 0.78447 0.77576 1.18857 1.21160 1.19681 1.46174 1.15380 1.55584 1.17592 1.18812 0.82007 0.78847 0.88685 1.90758 1.52625 1.62038 1.42505 1.22987 0.99025 1.03403 0.97310 1.22004 0.95256 0.91070 0.95141 1.18236 0.93336 1.04828 0.94610 1.21270 0.99784 0.96595 0.90140 1.20756 0.93676 1.06220 0.90331 1.98377 1.62691 1.97571 1.45135 1.21289 0.90329 0.95587 0.99895 1.21442 1.02972 1.04977 0.91741 1.19438 0.89097 0.93661 0.87767 1.86095 1.27358 1.74200 1.36677 1.23484 0.81163 0.98149 1.05245 0.95617 0.93883 0.93539 0.94027 0.90939 0.92590 0.76090 0.82694 0.86335 0.83086 0.81768 0.81044 0.86908 0.90595 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.67 2.24 44.24 0.10 14.77 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -29.69 8.73 25.60 0.22 -29.47 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.23 11.30 21.45 0.24 -52.99 16 9 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.70 -30.13 5.02 -450.51 -2.26 -32.39 16 14 C 0.53 22.09 6.30 86.32 0.54 22.64 16 15 O -0.60 -29.89 13.36 -4.40 -0.06 -29.95 16 16 C -0.21 -6.42 9.41 23.61 0.22 -6.20 16 17 C -0.01 -0.43 9.21 23.81 0.22 -0.21 16 18 C -0.11 -2.57 5.88 -20.07 -0.12 -2.68 16 19 C -0.06 -1.19 9.18 22.59 0.21 -0.98 16 20 C -0.08 -1.42 6.31 22.28 0.14 -1.28 16 21 Cl -0.07 -1.09 28.94 -2.72 -0.08 -1.16 16 22 C -0.05 -0.69 9.81 22.34 0.22 -0.47 16 23 C -0.19 -2.56 9.03 22.33 0.20 -2.35 16 24 C 0.15 2.95 6.70 22.88 0.15 3.11 16 25 O -0.33 -6.82 9.68 -90.28 -0.87 -7.70 16 26 C 0.01 0.13 9.81 113.37 1.11 1.25 16 27 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 28 H 0.04 1.97 5.64 -2.39 -0.01 1.95 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 4.09 5.95 -2.39 -0.01 4.08 16 32 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.40 14.65 8.52 -92.71 -0.79 13.86 16 34 H 0.16 3.64 6.07 -2.91 -0.02 3.63 16 35 H 0.12 4.06 7.10 -2.91 -0.02 4.04 16 36 H 0.15 2.74 6.17 -2.91 -0.02 2.72 16 37 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.17 1.10 6.30 -2.91 -0.02 1.08 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.49 7.65 -2.38 -0.02 0.47 16 41 H 0.08 0.49 7.67 -2.39 -0.02 0.47 16 Total: -1.00 -71.23 356.04 3.73 -67.50 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.28 Total: 23.78 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 4.45 Total: -11.74 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.02 Total: -85.38 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.93 Total: -37.64 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -71.23 3.73 -67.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183896851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.742 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds