Wall clock time and date at job start Tue Mar 31 2020 14:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47674 * 2 1 4 4 H 1.09001 * 109.46773 * 54.99863 * 3 2 1 5 5 C 1.50698 * 109.47432 * 174.99919 * 3 2 1 6 6 H 1.08003 * 119.99850 * 120.00267 * 5 3 2 7 7 C 1.37872 * 119.99927 * 300.00458 * 5 3 2 8 8 N 1.31513 * 120.00571 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99843 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47499 * 89.99799 * 9 7 5 11 11 H 1.48496 * 109.47282 * 209.99903 * 9 7 5 12 12 H 1.48507 * 109.46986 * 329.99792 * 9 7 5 13 13 N 1.46500 * 109.47146 * 295.00351 * 3 2 1 14 14 C 1.34779 * 120.00165 * 84.99328 * 13 3 2 15 15 O 1.21282 * 119.99927 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00033 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46866 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 14 19 19 O 1.21268 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.47087 * 120.00233 * 179.97438 * 18 17 16 21 21 C 1.39902 * 120.15581 * 359.72349 * 20 18 17 22 22 C 1.37812 * 119.84027 * 179.81092 * 21 20 18 23 23 C 1.38566 * 120.15786 * 0.44624 * 22 21 20 24 24 Cl 1.73599 * 119.83899 * 179.76206 * 23 22 21 25 25 C 1.38561 * 120.31948 * 359.78295 * 23 22 21 26 26 C 1.37814 * 120.16156 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.46659 * 300.00160 * 1 2 3 28 28 H 1.08997 * 109.46779 * 59.99665 * 1 2 3 29 29 H 1.08996 * 109.47505 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47299 * 240.00431 * 2 1 3 31 31 H 1.09001 * 109.47217 * 120.00536 * 2 1 3 32 32 H 0.96999 * 120.00271 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99985 * 264.99903 * 13 3 2 34 34 H 1.08993 * 109.47512 * 60.00410 * 16 14 13 35 35 H 1.09000 * 109.47247 * 300.00119 * 16 14 13 36 36 H 1.09000 * 109.47050 * 299.99952 * 17 16 14 37 37 H 1.09001 * 109.46801 * 60.00064 * 17 16 14 38 38 H 1.08002 * 120.07581 * 0.02562 * 21 20 18 39 39 H 1.08000 * 119.91990 * 180.18502 * 22 21 20 40 40 H 1.08004 * 119.92409 * 179.97438 * 25 23 22 41 41 H 1.08003 * 120.08126 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4063 0.3372 2.1733 9 14 6.0050 0.8810 1.3818 10 1 6.4418 2.1139 2.0849 11 1 6.4396 -0.3100 2.1548 12 1 6.6136 0.8414 0.0277 13 7 1.6526 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4341 16 6 0.0368 3.3388 -2.6544 17 6 -1.3821 3.8955 -2.5206 18 6 -1.7803 4.5704 -3.8078 19 8 -1.0055 4.6033 -4.7401 20 6 -3.1087 5.1892 -3.9335 21 6 -4.0073 5.1482 -2.8620 22 6 -5.2489 5.7335 -2.9855 23 6 -5.6114 6.3535 -4.1705 24 17 -7.1798 7.0828 -4.3191 25 6 -4.7284 6.3939 -5.2375 26 6 -3.4820 5.8162 -5.1271 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8294 -0.0606 2.9502 33 1 2.2720 2.1231 -1.9977 34 1 0.0681 2.6148 -3.4686 35 1 0.7282 4.1543 -2.8665 36 1 -2.0737 3.0803 -2.3082 37 1 -1.4129 4.6196 -1.7064 38 1 -3.7274 4.6620 -1.9392 39 1 -5.9425 5.7051 -2.1582 40 1 -5.0177 6.8785 -6.1583 41 1 -2.7949 5.8481 -5.9597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183929780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:06 Heat of formation + Delta-G solvation = -90.170068 kcal Electronic energy + Delta-G solvation = -23778.454943 eV Core-core repulsion = 20068.900601 eV Total energy + Delta-G solvation = -3709.554342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31164 -40.51323 -39.37620 -37.46462 -36.95888 -34.27655 -34.04752 -32.77247 -32.10538 -31.97058 -29.08187 -27.06839 -25.01492 -24.27241 -23.55173 -21.91999 -21.02753 -20.60653 -19.05997 -18.39565 -17.59302 -17.21387 -16.97944 -16.85666 -16.57377 -16.03289 -15.86090 -15.46871 -15.14944 -14.73921 -14.62111 -14.56378 -14.41566 -14.14582 -13.55300 -13.33042 -13.27874 -13.14682 -12.95431 -12.77141 -12.68045 -12.54323 -12.49406 -12.16325 -12.11874 -11.98895 -11.85911 -11.54496 -11.03316 -10.82165 -10.61816 -10.46025 -10.16380 -9.85419 -9.56433 -8.14952 -6.31643 -0.57149 0.22807 1.01046 1.25669 1.44824 1.45349 1.55624 1.92662 2.36076 2.57508 2.61369 3.08543 3.14890 3.64265 3.77559 3.83652 4.10946 4.17503 4.18136 4.24604 4.40020 4.53400 4.56192 4.61635 4.69590 4.81387 4.89919 4.90640 5.01106 5.07871 5.10656 5.10947 5.25028 5.30538 5.47700 5.59325 5.62035 5.67175 5.83526 5.96289 6.20520 6.43115 6.77189 7.05164 7.35748 7.64274 8.90061 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.002030 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.420147 B =13789.693200 C =14239.636216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.583 6.583 16 C -0.122 4.122 17 C -0.145 4.145 18 C 0.408 3.592 19 O -0.478 6.478 20 C -0.178 4.178 21 C -0.055 4.055 22 C -0.126 4.126 23 C -0.013 4.013 24 Cl -0.061 7.061 25 C -0.125 4.125 26 C -0.056 4.056 27 H 0.028 0.972 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.397 11.243 -14.728 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.187 1.187 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.465 6.465 16 C -0.162 4.162 17 C -0.183 4.183 18 C 0.288 3.712 19 O -0.355 6.355 20 C -0.179 4.179 21 C -0.074 4.074 22 C -0.144 4.144 23 C -0.040 4.040 24 Cl -0.032 7.032 25 C -0.144 4.144 26 C -0.074 4.074 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.177 0.823 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.647 11.199 -14.389 25.374 hybrid contribution 1.071 -0.079 0.238 1.100 sum -16.576 11.120 -14.151 24.468 Atomic orbital electron populations 1.21669 0.96663 0.99127 1.00497 1.21788 0.94079 0.99186 1.01090 1.18344 0.93408 0.89221 0.81614 0.98156 1.21605 0.91744 1.38741 1.06564 0.91292 1.25742 1.03116 0.94486 0.95148 1.70038 1.36927 1.38424 1.09804 0.85416 0.79434 0.77410 0.78492 1.20440 1.20991 1.18679 1.46319 1.15912 1.56148 1.17483 1.21086 0.81664 0.78438 0.90181 1.90644 1.52178 1.61268 1.42401 1.21416 0.98094 1.01960 0.94764 1.21753 0.96966 1.02722 0.96840 1.22576 0.85386 0.75049 0.88206 1.90526 1.52789 1.50879 1.41297 1.20643 0.96490 1.04249 0.96527 1.21725 0.91820 0.95247 0.98558 1.21318 0.97598 0.98199 0.97288 1.21459 0.87919 0.98328 0.96278 1.98398 1.25449 1.81345 1.98028 1.21232 0.92832 1.01084 0.99211 1.21509 0.95730 0.93174 0.97018 0.95306 0.93377 0.93790 0.94353 0.91194 0.92645 0.76359 0.87602 0.87859 0.86679 0.86883 0.82280 0.82440 0.82582 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.52 71.98 0.61 -4.67 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.28 13.93 2.24 44.25 0.10 14.03 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.91 -51.79 11.29 21.45 0.24 -51.55 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.98 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.71 -28.23 5.02 -446.09 -2.24 -30.47 16 14 C 0.50 18.00 6.40 87.66 0.56 18.56 16 15 O -0.58 -24.82 13.12 -3.04 -0.04 -24.86 16 16 C -0.12 -3.13 4.99 29.85 0.15 -2.98 16 17 C -0.15 -3.12 3.60 29.85 0.11 -3.01 16 18 C 0.41 8.50 7.11 28.01 0.20 8.70 16 19 O -0.48 -12.33 15.97 -2.99 -0.05 -12.37 16 20 C -0.18 -3.12 5.87 -20.15 -0.12 -3.23 16 21 C -0.06 -0.79 9.47 22.57 0.21 -0.58 16 22 C -0.13 -1.65 9.81 22.25 0.22 -1.43 16 23 C -0.01 -0.18 6.33 22.43 0.14 -0.04 16 24 Cl -0.06 -0.80 28.95 -2.72 -0.08 -0.88 16 25 C -0.13 -1.68 9.81 22.25 0.22 -1.46 16 26 C -0.06 -0.89 9.60 22.57 0.22 -0.68 16 27 H 0.03 1.33 7.85 -2.39 -0.02 1.32 16 28 H 0.05 1.96 5.65 -2.39 -0.01 1.95 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.75 8.14 -2.38 -0.02 1.74 16 31 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 33 H 0.40 13.80 8.54 -92.71 -0.79 13.01 16 34 H 0.11 2.47 8.10 -2.39 -0.02 2.45 16 35 H 0.10 2.47 8.10 -2.39 -0.02 2.45 16 36 H 0.12 2.34 8.04 -2.39 -0.02 2.32 16 37 H 0.11 2.35 8.05 -2.39 -0.02 2.33 16 38 H 0.16 1.86 7.05 -2.91 -0.02 1.84 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.15 2.21 7.65 -2.91 -0.02 2.19 16 Total: -1.00 -65.62 359.41 3.58 -62.03 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.27 Total: 23.95 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 3.46 Total: -9.83 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -2.00 Total: -82.02 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.09 Total: -37.23 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -65.62 3.58 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183929780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.137 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds