Wall clock time and date at job start Tue Mar 31 2020 14:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47032 * 180.02562 * 17 16 14 19 19 O 1.21259 * 120.00303 * 0.02562 * 18 17 16 20 20 C 1.47093 * 119.99832 * 180.02562 * 18 17 16 21 21 C 1.39898 * 120.15854 * 359.72336 * 20 18 17 22 22 C 1.37811 * 119.84117 * 179.81367 * 21 20 18 23 23 C 1.38564 * 120.15805 * 0.44459 * 22 21 20 24 24 Cl 1.73601 * 119.84305 * 179.76460 * 23 22 21 25 25 C 1.38570 * 120.31979 * 359.78639 * 23 22 21 26 26 C 1.37813 * 120.15961 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 30 30 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 31 31 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 32 32 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 33 33 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 34 34 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 35 35 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 36 36 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 37 37 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 38 38 H 1.08008 * 120.07638 * 0.02562 * 21 20 18 39 39 H 1.07997 * 119.92548 * 180.18596 * 22 21 20 40 40 H 1.07996 * 119.92007 * 179.97438 * 25 23 22 41 41 H 1.07999 * 120.08131 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7461 4.5560 3.8536 19 8 -0.9633 4.5850 4.7792 20 6 -3.0734 5.1743 3.9934 21 6 -3.9771 5.1478 2.9258 22 6 -5.2204 5.7259 3.0652 23 6 -5.5728 6.3403 4.2561 24 17 -7.1388 7.0712 4.4207 25 6 -4.6811 6.3746 5.3162 26 6 -3.4362 5.7964 5.1929 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9548 0.8552 -0.5318 33 1 2.2902 2.1166 1.9978 34 1 0.0991 2.6017 3.4901 35 1 0.7539 4.1436 2.8885 36 1 -1.3974 4.6138 1.7493 37 1 -2.0528 3.0720 2.3506 38 1 -3.7023 4.6725 1.9957 39 1 -5.9202 5.7035 2.2430 40 1 -4.9623 6.8556 6.2414 41 1 -2.7420 5.8243 6.0198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183929799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:09 Heat of formation + Delta-G solvation = -73.170492 kcal Electronic energy + Delta-G solvation = -23865.206340 eV Core-core repulsion = 20156.389155 eV Total energy + Delta-G solvation = -3708.817185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51911 -39.29574 -38.60277 -36.89749 -35.38449 -33.10481 -32.43822 -31.72726 -31.51305 -31.06172 -27.52260 -25.98065 -23.72637 -22.98553 -22.29209 -20.61031 -19.79224 -19.51224 -18.13710 -17.63397 -16.73729 -16.23646 -16.02037 -15.73774 -15.38668 -14.89895 -14.66972 -14.32783 -14.10380 -13.95632 -13.72384 -13.24353 -13.10670 -12.72377 -12.52927 -12.44126 -12.21158 -12.05274 -11.90037 -11.82396 -11.71140 -11.30879 -11.14935 -10.90424 -10.70427 -10.45389 -9.99985 -9.90373 -9.61370 -9.60304 -9.25377 -9.20990 -9.03261 -8.35354 -8.09530 -6.59020 -4.23082 0.07470 0.77807 1.56965 1.97870 3.22004 3.23172 3.36968 3.42736 3.51136 3.58753 4.14007 4.22391 4.33887 4.40493 4.65386 4.74290 4.76994 5.04364 5.06187 5.14449 5.15457 5.39705 5.42059 5.62086 5.65701 5.69439 5.82174 5.84789 5.93121 6.05617 6.07898 6.17869 6.25924 6.67515 6.77215 6.94081 7.03024 7.21914 7.34981 7.40141 7.64899 8.22350 8.46827 8.69488 8.97012 9.46265 10.81551 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.028021 B = 0.002153 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.001117 B =12999.287979 C =13525.002052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.041 0.959 5 C -0.617 4.617 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.899 5.899 9 Si 1.041 2.959 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.701 5.701 14 C 0.501 3.499 15 O -0.555 6.555 16 C -0.134 4.134 17 C -0.148 4.148 18 C 0.397 3.603 19 O -0.449 6.449 20 C -0.163 4.163 21 C -0.057 4.057 22 C -0.123 4.123 23 C -0.009 4.009 24 Cl -0.065 7.065 25 C -0.125 4.125 26 C -0.051 4.051 27 H 0.029 0.971 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.394 0.606 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 10.365 12.257 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.059 0.941 5 C -0.655 4.655 6 H 0.079 0.921 7 C -0.169 4.169 8 N -0.532 5.532 9 Si 0.869 3.131 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.348 5.348 14 C 0.287 3.713 15 O -0.436 6.436 16 C -0.175 4.175 17 C -0.185 4.185 18 C 0.274 3.726 19 O -0.324 6.324 20 C -0.164 4.164 21 C -0.076 4.076 22 C -0.142 4.142 23 C -0.035 4.035 24 Cl -0.036 7.036 25 C -0.144 4.144 26 C -0.069 4.069 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.145 9.883 10.507 26.429 hybrid contribution 0.093 0.662 2.035 2.142 sum -22.052 10.545 12.543 27.474 Atomic orbital electron populations 1.21878 0.97405 0.98812 1.01893 1.22363 0.93803 0.99849 1.01835 1.19041 0.95765 0.88540 0.82354 0.94097 1.22106 0.89785 1.49481 1.04119 0.92089 1.25695 0.97565 0.92390 1.01235 1.70870 1.07080 1.40896 1.34315 0.84098 0.75471 0.77668 0.75839 1.20966 1.19511 1.20641 1.46265 1.14685 1.55787 1.18094 1.20388 0.82672 0.79168 0.89112 1.90646 1.50956 1.60426 1.41526 1.21472 0.96817 1.01911 0.97273 1.21758 0.98076 1.02405 0.96302 1.22579 0.85090 0.75836 0.89066 1.90534 1.51317 1.49340 1.41180 1.20713 0.96976 1.03208 0.95514 1.21577 0.91874 0.95516 0.98585 1.21093 0.97531 0.98828 0.96737 1.21303 0.87753 0.98463 0.96021 1.98395 1.25952 1.81338 1.97890 1.21057 0.93272 1.01424 0.98613 1.21423 0.95319 0.93052 0.97099 0.95150 0.93306 0.93026 0.91328 0.93122 0.92116 0.77358 0.88859 0.88767 0.87284 0.87340 0.83434 0.84090 0.84290 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.53 37.15 0.32 -2.47 16 2 C -0.14 -3.06 5.28 -26.73 -0.14 -3.21 16 3 C 0.25 5.75 1.82 -69.08 -0.13 5.62 16 4 H 0.04 1.04 6.26 -51.93 -0.32 0.71 16 5 C -0.62 -16.49 9.01 -34.44 -0.31 -16.80 16 6 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 7 C 0.04 1.05 5.32 -17.82 -0.09 0.96 16 8 N -0.90 -26.62 13.69 55.43 0.76 -25.87 16 9 Si 1.04 24.82 26.27 -169.99 -4.47 20.36 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -5.97 5.67 56.52 0.32 -5.65 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.70 -13.63 5.03 -54.94 -0.28 -13.91 16 14 C 0.50 8.76 6.42 -10.99 -0.07 8.69 16 15 O -0.56 -11.04 13.12 5.56 0.07 -10.97 16 16 C -0.13 -1.75 4.99 -27.88 -0.14 -1.89 16 17 C -0.15 -1.60 3.60 -27.88 -0.10 -1.70 16 18 C 0.40 4.23 7.11 -30.72 -0.22 4.01 16 19 O -0.45 -5.91 15.97 5.58 0.09 -5.82 16 20 C -0.16 -1.48 5.87 -105.06 -0.62 -2.09 16 21 C -0.06 -0.43 9.47 -39.12 -0.37 -0.80 16 22 C -0.12 -0.88 9.81 -39.62 -0.39 -1.27 16 23 C -0.01 -0.07 6.33 -39.34 -0.25 -0.31 16 24 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.97 16 25 C -0.13 -0.91 9.81 -39.61 -0.39 -1.30 16 26 C -0.05 -0.42 9.60 -39.11 -0.38 -0.80 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.92 5.63 -51.92 -0.29 0.63 16 29 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 30 H 0.07 1.58 4.74 -51.92 -0.25 1.33 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 33 H 0.39 6.94 8.53 -40.82 -0.35 6.60 16 34 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.11 1.13 8.04 -51.93 -0.42 0.71 16 37 H 0.11 1.10 8.05 -51.93 -0.42 0.69 16 38 H 0.15 0.91 7.05 -52.48 -0.37 0.54 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.14 1.13 7.65 -52.49 -0.40 0.73 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -31.36 354.97 -8.66 -40.01 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.41 Total: 6.18 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.27 Total: -13.37 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.48 Total: -39.77 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.16 Total: -16.79 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.47 Total: 20.36 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.36 -8.66 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183929799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.158 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds