Wall clock time and date at job start Tue Mar 31 2020 14:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47032 * 180.02562 * 17 16 14 19 19 O 1.21259 * 120.00303 * 0.02562 * 18 17 16 20 20 C 1.47093 * 119.99832 * 180.02562 * 18 17 16 21 21 C 1.39898 * 120.15854 * 359.72336 * 20 18 17 22 22 C 1.37811 * 119.84117 * 179.81367 * 21 20 18 23 23 C 1.38564 * 120.15805 * 0.44459 * 22 21 20 24 24 Cl 1.73601 * 119.84305 * 179.76460 * 23 22 21 25 25 C 1.38570 * 120.31979 * 359.78639 * 23 22 21 26 26 C 1.37813 * 120.15961 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 30 30 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 31 31 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 32 32 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 33 33 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 34 34 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 35 35 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 36 36 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 37 37 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 38 38 H 1.08008 * 120.07638 * 0.02562 * 21 20 18 39 39 H 1.07997 * 119.92548 * 180.18596 * 22 21 20 40 40 H 1.07996 * 119.92007 * 179.97438 * 25 23 22 41 41 H 1.07999 * 120.08131 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7461 4.5560 3.8536 19 8 -0.9633 4.5850 4.7792 20 6 -3.0734 5.1743 3.9934 21 6 -3.9771 5.1478 2.9258 22 6 -5.2204 5.7259 3.0652 23 6 -5.5728 6.3403 4.2561 24 17 -7.1388 7.0712 4.4207 25 6 -4.6811 6.3746 5.3162 26 6 -3.4362 5.7964 5.1929 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9548 0.8552 -0.5318 33 1 2.2902 2.1166 1.9978 34 1 0.0991 2.6017 3.4901 35 1 0.7539 4.1436 2.8885 36 1 -1.3974 4.6138 1.7493 37 1 -2.0528 3.0720 2.3506 38 1 -3.7023 4.6725 1.9957 39 1 -5.9202 5.7035 2.2430 40 1 -4.9623 6.8556 6.2414 41 1 -2.7420 5.8243 6.0198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183929799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:09 Heat of formation + Delta-G solvation = -91.638267 kcal Electronic energy + Delta-G solvation = -23866.007163 eV Core-core repulsion = 20156.389155 eV Total energy + Delta-G solvation = -3709.618008 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34917 -40.61347 -39.39955 -37.47303 -37.10019 -34.43785 -34.14471 -33.05325 -32.12120 -32.02072 -29.25222 -27.08517 -24.57636 -24.11942 -23.58317 -22.07753 -21.14785 -20.64793 -19.76977 -18.67831 -17.83036 -17.28292 -17.02617 -16.78819 -16.65106 -16.00501 -15.64178 -15.40412 -15.19049 -14.84494 -14.69998 -14.59168 -14.47772 -14.29633 -14.11031 -13.71770 -13.34314 -13.33362 -12.88196 -12.66221 -12.55597 -12.50406 -12.45156 -12.28708 -12.10980 -11.86804 -11.76533 -11.37264 -11.08867 -10.84829 -10.64963 -10.47208 -10.17272 -9.86429 -9.74983 -8.78869 -6.43907 -0.58255 0.21919 1.00414 1.24362 1.46177 1.51267 1.70253 1.82861 2.41295 2.43993 2.60367 3.01437 3.02880 3.61863 3.74872 3.82445 4.06531 4.13938 4.16668 4.18627 4.35258 4.37716 4.44267 4.55272 4.58329 4.68014 4.87060 4.88755 4.90064 4.98558 5.06162 5.09893 5.14531 5.23879 5.25511 5.34428 5.57743 5.61134 5.70044 5.72175 6.01364 6.41741 6.53666 6.89884 7.30386 7.48986 8.60100 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.028021 B = 0.002153 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.001117 B =12999.287979 C =13525.002052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.025 0.975 5 C -0.614 4.614 6 H 0.036 0.964 7 C -0.009 4.009 8 N -0.930 5.930 9 Si 1.074 2.926 10 H -0.285 1.285 11 H -0.242 1.242 12 H -0.272 1.272 13 N -0.708 5.708 14 C 0.503 3.497 15 O -0.576 6.576 16 C -0.124 4.124 17 C -0.144 4.144 18 C 0.407 3.593 19 O -0.480 6.480 20 C -0.178 4.178 21 C -0.054 4.054 22 C -0.125 4.125 23 C -0.013 4.013 24 Cl -0.061 7.061 25 C -0.126 4.126 26 C -0.057 4.057 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.256 0.744 33 H 0.401 0.599 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.719 10.615 12.403 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.043 0.957 5 C -0.652 4.652 6 H 0.054 0.946 7 C -0.209 4.209 8 N -0.565 5.565 9 Si 0.896 3.104 10 H -0.211 1.211 11 H -0.166 1.166 12 H -0.197 1.197 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.457 6.457 16 C -0.164 4.164 17 C -0.182 4.182 18 C 0.287 3.713 19 O -0.357 6.357 20 C -0.179 4.179 21 C -0.072 4.072 22 C -0.143 4.143 23 C -0.040 4.040 24 Cl -0.032 7.032 25 C -0.144 4.144 26 C -0.076 4.076 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.235 0.765 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.914 10.147 10.687 28.946 hybrid contribution 0.910 0.662 2.067 2.353 sum -24.004 10.809 12.754 29.252 Atomic orbital electron populations 1.21762 0.95160 1.00362 1.01681 1.22257 0.95730 0.98338 1.01313 1.18729 0.93171 0.89765 0.83708 0.95706 1.22324 0.91842 1.47945 1.03052 0.94560 1.26898 0.97741 0.92121 1.04180 1.70979 1.08132 1.43459 1.33957 0.83698 0.75138 0.78738 0.72844 1.21105 1.16647 1.19740 1.46166 1.15954 1.56421 1.17100 1.21041 0.81431 0.78209 0.90282 1.90632 1.51329 1.60973 1.42736 1.21420 0.98322 1.01977 0.94718 1.21763 0.96775 1.02912 0.96740 1.22618 0.85391 0.75014 0.88312 1.90532 1.52318 1.50820 1.42061 1.20643 0.96535 1.04288 0.96473 1.21736 0.91665 0.95162 0.98640 1.21330 0.97665 0.98230 0.97124 1.21470 0.87917 0.98324 0.96299 1.98399 1.25689 1.81254 1.97890 1.21225 0.92787 1.01102 0.99310 1.21504 0.95802 0.93231 0.97027 0.92718 0.92891 0.93822 0.92487 0.93055 0.93437 0.76500 0.87664 0.88161 0.86603 0.86268 0.81995 0.82329 0.82706 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.53 71.98 0.61 -4.21 16 2 C -0.14 -5.82 5.28 30.59 0.16 -5.66 16 3 C 0.25 11.55 1.82 44.24 0.08 11.63 16 4 H 0.03 1.24 6.26 -2.39 -0.01 1.23 16 5 C -0.61 -33.20 9.01 25.60 0.23 -32.97 16 6 H 0.04 2.09 7.96 -2.91 -0.02 2.07 16 7 C -0.01 -0.52 5.32 84.66 0.45 -0.07 16 8 N -0.93 -56.34 13.69 21.45 0.29 -56.04 16 9 Si 1.07 49.64 26.27 68.60 1.80 51.44 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.24 -10.08 5.67 99.48 0.56 -9.52 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.71 -26.90 5.03 -446.11 -2.24 -29.14 16 14 C 0.50 16.72 6.42 87.66 0.56 17.28 16 15 O -0.58 -21.75 13.12 -3.03 -0.04 -21.79 16 16 C -0.12 -3.00 4.99 29.85 0.15 -2.85 16 17 C -0.14 -2.81 3.60 29.85 0.11 -2.70 16 18 C 0.41 8.03 7.11 28.01 0.20 8.23 16 19 O -0.48 -12.14 15.97 -2.96 -0.05 -12.19 16 20 C -0.18 -2.93 5.87 -20.15 -0.12 -3.05 16 21 C -0.05 -0.69 9.47 22.57 0.21 -0.48 16 22 C -0.13 -1.49 9.81 22.25 0.22 -1.27 16 23 C -0.01 -0.17 6.33 22.43 0.14 -0.03 16 24 Cl -0.06 -0.76 28.95 -2.72 -0.08 -0.84 16 25 C -0.13 -1.62 9.81 22.25 0.22 -1.40 16 26 C -0.06 -0.88 9.60 22.57 0.22 -0.67 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.87 5.63 -2.38 -0.01 1.85 16 29 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 30 H 0.06 2.53 4.74 -2.38 -0.01 2.52 16 31 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 33 H 0.40 13.96 8.53 -92.71 -0.79 13.17 16 34 H 0.11 2.33 8.10 -2.39 -0.02 2.31 16 35 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 36 H 0.12 2.13 8.04 -2.39 -0.02 2.11 16 37 H 0.12 2.10 8.05 -2.39 -0.02 2.08 16 38 H 0.16 1.54 7.05 -2.91 -0.02 1.52 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.14 2.15 7.65 -2.91 -0.02 2.12 16 Total: -1.00 -67.21 354.97 3.22 -63.99 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.09 Total: 22.78 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 3.45 Total: -18.21 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.95 Total: -85.19 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.09 Total: -33.98 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.80 Total: 51.44 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -67.21 3.22 -63.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183929799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.650 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds