Wall clock time and date at job start Tue Mar 31 2020 14:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46932 * 2 1 4 4 H 1.08996 * 109.46591 * 55.00547 * 3 2 1 5 5 C 1.50704 * 109.46811 * 175.00314 * 3 2 1 6 6 H 1.07999 * 119.99920 * 120.00547 * 5 3 2 7 7 C 1.37878 * 120.00314 * 300.00016 * 5 3 2 8 8 N 1.31509 * 120.00067 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99803 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47412 * 89.99883 * 9 7 5 11 11 H 1.48499 * 109.47002 * 210.00066 * 9 7 5 12 12 H 1.48502 * 109.46943 * 329.99760 * 9 7 5 13 13 N 1.46495 * 109.47180 * 295.00516 * 3 2 1 14 14 C 1.34773 * 120.00231 * 84.99665 * 13 3 2 15 15 O 1.21285 * 119.99613 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00088 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.70261 * 300.57161 * 16 14 13 18 18 C 1.53404 * 109.70178 * 61.18304 * 16 14 13 19 19 O 1.42824 * 108.38840 * 184.43349 * 18 16 14 20 20 C 1.35861 * 117.88055 * 310.93784 * 19 18 16 21 21 C 1.39140 * 118.48877 * 196.92828 * 20 19 18 22 22 C 1.37735 * 120.29338 * 180.19226 * 21 20 19 23 23 C 1.38382 * 119.92696 * 0.02892 * 22 21 20 24 24 Cl 1.73601 * 120.02409 * 179.87167 * 23 22 21 25 25 C 1.38206 * 119.95369 * 359.88997 * 23 22 21 26 26 C 1.38285 * 121.78417 * 16.98934 * 20 19 18 27 27 C 1.50774 * 121.46386 * 359.69621 * 26 20 19 28 28 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46997 * 299.99136 * 1 2 3 30 30 H 1.08998 * 109.47645 * 59.99670 * 1 2 3 31 31 H 1.09011 * 109.46936 * 240.00794 * 2 1 3 32 32 H 1.08998 * 109.47645 * 120.00330 * 2 1 3 33 33 H 0.97002 * 120.00192 * 179.97438 * 8 7 5 34 34 H 0.97008 * 120.00111 * 264.99653 * 13 3 2 35 35 H 1.08998 * 109.68310 * 304.16147 * 18 16 14 36 36 H 1.09003 * 109.68093 * 64.71431 * 18 16 14 37 37 H 1.08003 * 119.88192 * 0.22498 * 21 20 19 38 38 H 1.07995 * 120.04331 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.84733 * 180.02562 * 25 23 22 40 40 H 1.09002 * 109.44149 * 257.74597 * 27 26 20 41 41 H 1.08999 * 109.43491 * 137.82734 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1434 0.8784 1.2278 8 7 5.4541 0.8795 1.3355 9 14 3.0966 0.1088 2.5700 10 1 2.8757 -1.3273 2.2632 11 1 3.7939 0.2347 3.8750 12 1 1.7879 0.8073 2.6386 13 7 1.6523 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3668 15 8 -0.3394 2.6326 -0.4339 16 6 0.0364 3.3387 -2.6543 17 1 0.7315 4.1487 -2.8753 18 6 0.0502 2.3174 -3.7988 19 8 -0.2292 3.0046 -5.0193 20 6 -1.2992 3.8413 -5.0466 21 6 -1.8015 4.2361 -6.2827 22 6 -2.8826 5.0866 -6.3538 23 6 -3.4726 5.5518 -5.1917 24 17 -4.8332 6.6265 -5.2783 25 6 -2.9777 5.1606 -3.9620 26 6 -1.8918 4.3042 -3.8861 27 6 -1.3830 3.8973 -2.5263 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8902 32 1 1.8934 -0.5139 0.8899 33 1 5.8772 0.4817 2.1125 34 1 2.2718 2.1233 -1.9978 35 1 1.0315 1.8466 -3.8589 36 1 -0.7116 1.5580 -3.6224 37 1 -1.3424 3.8740 -7.1907 38 1 -3.2689 5.3908 -7.3153 39 1 -3.4397 5.5244 -3.0562 40 1 -2.0375 3.1325 -2.1080 41 1 -1.3731 4.7659 -1.8679 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183932211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:12 Heat of formation + Delta-G solvation = -64.309235 kcal Electronic energy + Delta-G solvation = -24981.475945 eV Core-core repulsion = 21273.043013 eV Total energy + Delta-G solvation = -3708.432932 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16132 -39.36514 -37.97736 -36.44154 -35.63354 -34.22925 -32.54838 -31.81779 -30.69946 -30.36052 -27.63118 -25.92533 -24.66622 -22.99711 -22.72619 -21.44499 -20.10289 -19.56317 -18.14066 -17.77525 -16.79660 -16.63466 -15.97385 -15.68363 -15.31247 -15.03782 -14.60632 -14.31387 -13.99054 -13.87450 -13.69259 -13.52273 -13.35608 -12.96430 -12.70275 -12.46308 -12.34647 -12.01521 -11.87044 -11.72678 -11.29957 -11.16879 -11.04418 -11.00273 -10.88506 -10.73090 -10.69206 -10.00095 -9.65476 -9.32363 -9.25366 -9.15350 -8.82353 -8.34790 -8.19991 -6.27099 -4.30322 0.90700 0.94127 1.90611 2.92033 3.03258 3.18293 3.30895 3.31713 3.34667 3.70465 4.25548 4.36619 4.39815 4.47228 4.62939 4.81100 4.91105 5.03583 5.06270 5.11068 5.30736 5.34746 5.44621 5.59608 5.69925 5.78653 5.86890 5.91734 5.94036 5.95232 6.07680 6.10332 6.26952 6.55900 6.61365 6.74681 6.85258 7.09899 7.15492 7.19998 7.42404 8.03874 8.41214 8.67129 8.78923 9.33095 10.84879 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.002686 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.526729 B =10423.458790 C =10780.713753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.512 3.488 15 O -0.542 6.542 16 C -0.149 4.149 17 H 0.110 0.890 18 C 0.072 3.928 19 O -0.307 6.307 20 C 0.137 3.863 21 C -0.136 4.136 22 C -0.081 4.081 23 C -0.067 4.067 24 Cl -0.075 7.075 25 C -0.073 4.073 26 C -0.141 4.141 27 C -0.059 4.059 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.395 0.605 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 6.423 -14.834 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.296 3.704 15 O -0.420 6.420 16 C -0.171 4.171 17 H 0.128 0.872 18 C -0.003 4.003 19 O -0.220 6.220 20 C 0.091 3.909 21 C -0.155 4.155 22 C -0.100 4.100 23 C -0.094 4.094 24 Cl -0.046 7.046 25 C -0.092 4.092 26 C -0.142 4.142 27 C -0.096 4.096 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.113 0.887 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.190 6.380 -14.180 22.448 hybrid contribution -0.178 -0.358 0.627 0.744 sum -16.368 6.022 -13.553 22.088 Atomic orbital electron populations 1.21877 0.96965 0.99113 1.02151 1.22298 0.94305 0.99926 1.01256 1.19180 0.95736 0.88498 0.82693 0.93227 1.21033 0.88528 1.40014 1.07951 0.90157 1.24834 0.94862 0.95109 0.97664 1.69861 1.08697 1.44331 1.29823 0.86907 0.80942 0.79956 0.80955 1.20212 1.22131 1.18477 1.46220 1.14644 1.55532 1.18134 1.19922 0.82805 0.79253 0.88459 1.90688 1.51537 1.59534 1.40259 1.22042 0.99604 1.00184 0.95274 0.87189 1.23029 1.03565 0.92729 0.81027 1.86041 1.43554 1.55904 1.36533 1.18785 0.87667 0.91225 0.93238 1.20476 0.97497 1.01229 0.96292 1.20734 0.95138 0.96564 0.97553 1.20704 0.93989 0.99747 0.94976 1.98361 1.43753 1.63808 1.98725 1.20796 0.95212 0.96370 0.96797 1.19860 0.98385 1.00928 0.95021 1.20325 0.94315 1.02689 0.92304 0.94890 0.92824 0.93118 0.92224 0.92676 0.92210 0.77122 0.86372 0.90819 0.84213 0.84425 0.84563 0.88731 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.51 37.16 0.32 -2.38 16 2 C -0.14 -2.91 5.11 -26.73 -0.14 -3.05 16 3 C 0.24 5.39 1.83 -69.08 -0.13 5.26 16 4 H 0.05 1.24 6.64 -51.93 -0.34 0.89 16 5 C -0.54 -13.91 9.31 -34.44 -0.32 -14.23 16 6 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 9 Si 0.88 21.14 24.41 -169.99 -4.15 16.99 16 10 H -0.28 -6.39 6.83 56.52 0.39 -6.00 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -6.15 6.53 56.52 0.37 -5.79 16 13 N -0.70 -12.41 4.91 -54.93 -0.27 -12.68 16 14 C 0.51 8.41 5.72 -10.99 -0.06 8.35 16 15 O -0.54 -10.61 12.93 5.55 0.07 -10.54 16 16 C -0.15 -1.85 2.75 -91.52 -0.25 -2.10 16 17 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 18 C 0.07 0.79 6.26 37.37 0.23 1.02 16 19 O -0.31 -3.54 10.27 -19.31 -0.20 -3.73 16 20 C 0.14 1.53 6.47 -39.23 -0.25 1.28 16 21 C -0.14 -1.30 9.92 -39.43 -0.39 -1.69 16 22 C -0.08 -0.72 9.82 -39.71 -0.39 -1.11 16 23 C -0.07 -0.66 6.32 -39.54 -0.25 -0.91 16 24 Cl -0.08 -0.69 28.96 -51.86 -1.50 -2.19 16 25 C -0.07 -0.75 9.45 -39.49 -0.37 -1.12 16 26 C -0.14 -1.57 5.75 -104.47 -0.60 -2.17 16 27 C -0.06 -0.70 4.67 -27.81 -0.13 -0.83 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 30 H 0.05 0.90 5.65 -51.93 -0.29 0.61 16 31 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.06 1.23 3.21 -51.93 -0.17 1.07 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.40 6.14 8.01 -40.82 -0.33 5.82 16 35 H 0.12 1.14 7.57 -51.93 -0.39 0.75 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.09 1.19 7.69 -51.93 -0.40 0.80 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -29.76 341.02 -8.28 -38.04 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.32 Total: 5.60 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.83 Total: -11.61 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.50 Total: -37.70 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.13 Total: -14.28 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.15 Total: 16.99 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.76 -8.28 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.268 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds