Wall clock time and date at job start Tue Mar 31 2020 14:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46932 * 2 1 4 4 H 1.08996 * 109.46591 * 55.00547 * 3 2 1 5 5 C 1.50704 * 109.46811 * 175.00314 * 3 2 1 6 6 H 1.07999 * 119.99920 * 120.00547 * 5 3 2 7 7 C 1.37878 * 120.00314 * 300.00016 * 5 3 2 8 8 N 1.31509 * 120.00067 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99803 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47412 * 89.99883 * 9 7 5 11 11 H 1.48499 * 109.47002 * 210.00066 * 9 7 5 12 12 H 1.48502 * 109.46943 * 329.99760 * 9 7 5 13 13 N 1.46495 * 109.47180 * 295.00516 * 3 2 1 14 14 C 1.34773 * 120.00231 * 84.99665 * 13 3 2 15 15 O 1.21285 * 119.99613 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00088 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.70261 * 300.57161 * 16 14 13 18 18 C 1.53404 * 109.70178 * 61.18304 * 16 14 13 19 19 O 1.42824 * 108.38840 * 184.43349 * 18 16 14 20 20 C 1.35861 * 117.88055 * 310.93784 * 19 18 16 21 21 C 1.39140 * 118.48877 * 196.92828 * 20 19 18 22 22 C 1.37735 * 120.29338 * 180.19226 * 21 20 19 23 23 C 1.38382 * 119.92696 * 0.02892 * 22 21 20 24 24 Cl 1.73601 * 120.02409 * 179.87167 * 23 22 21 25 25 C 1.38206 * 119.95369 * 359.88997 * 23 22 21 26 26 C 1.38285 * 121.78417 * 16.98934 * 20 19 18 27 27 C 1.50774 * 121.46386 * 359.69621 * 26 20 19 28 28 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46997 * 299.99136 * 1 2 3 30 30 H 1.08998 * 109.47645 * 59.99670 * 1 2 3 31 31 H 1.09011 * 109.46936 * 240.00794 * 2 1 3 32 32 H 1.08998 * 109.47645 * 120.00330 * 2 1 3 33 33 H 0.97002 * 120.00192 * 179.97438 * 8 7 5 34 34 H 0.97008 * 120.00111 * 264.99653 * 13 3 2 35 35 H 1.08998 * 109.68310 * 304.16147 * 18 16 14 36 36 H 1.09003 * 109.68093 * 64.71431 * 18 16 14 37 37 H 1.08003 * 119.88192 * 0.22498 * 21 20 19 38 38 H 1.07995 * 120.04331 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.84733 * 180.02562 * 25 23 22 40 40 H 1.09002 * 109.44149 * 257.74597 * 27 26 20 41 41 H 1.08999 * 109.43491 * 137.82734 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1434 0.8784 1.2278 8 7 5.4541 0.8795 1.3355 9 14 3.0966 0.1088 2.5700 10 1 2.8757 -1.3273 2.2632 11 1 3.7939 0.2347 3.8750 12 1 1.7879 0.8073 2.6386 13 7 1.6523 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3668 15 8 -0.3394 2.6326 -0.4339 16 6 0.0364 3.3387 -2.6543 17 1 0.7315 4.1487 -2.8753 18 6 0.0502 2.3174 -3.7988 19 8 -0.2292 3.0046 -5.0193 20 6 -1.2992 3.8413 -5.0466 21 6 -1.8015 4.2361 -6.2827 22 6 -2.8826 5.0866 -6.3538 23 6 -3.4726 5.5518 -5.1917 24 17 -4.8332 6.6265 -5.2783 25 6 -2.9777 5.1606 -3.9620 26 6 -1.8918 4.3042 -3.8861 27 6 -1.3830 3.8973 -2.5263 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8902 32 1 1.8934 -0.5139 0.8899 33 1 5.8772 0.4817 2.1125 34 1 2.2718 2.1233 -1.9978 35 1 1.0315 1.8466 -3.8589 36 1 -0.7116 1.5580 -3.6224 37 1 -1.3424 3.8740 -7.1907 38 1 -3.2689 5.3908 -7.3153 39 1 -3.4397 5.5244 -3.0562 40 1 -2.0375 3.1325 -2.1080 41 1 -1.3731 4.7659 -1.8679 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183932211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:12 Heat of formation + Delta-G solvation = -82.445656 kcal Electronic energy + Delta-G solvation = -24982.262399 eV Core-core repulsion = 21273.043013 eV Total energy + Delta-G solvation = -3709.219387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08463 -40.66493 -38.79829 -37.24405 -37.18377 -35.26547 -34.41873 -33.32728 -31.71690 -31.13660 -29.40739 -26.81481 -25.76398 -24.47689 -23.75885 -22.71725 -21.51884 -20.82547 -19.23951 -18.94852 -18.10327 -17.73594 -17.37284 -16.98488 -16.46454 -16.24777 -15.80930 -15.45652 -15.14705 -15.02331 -14.88612 -14.57564 -14.52019 -14.20560 -13.95070 -13.70164 -13.59957 -13.44185 -13.27909 -12.98700 -12.76948 -12.53863 -12.38265 -12.15417 -11.86921 -11.84005 -11.73109 -11.60125 -11.36319 -11.22936 -10.86802 -10.69255 -9.94206 -9.79001 -9.14232 -8.38017 -6.43443 0.13410 0.18610 1.16699 1.26922 1.35589 1.44367 1.65846 2.12663 2.25641 2.36957 2.57058 2.98166 3.41818 3.50184 3.60822 3.75587 3.90345 4.05991 4.14648 4.24595 4.32622 4.33623 4.42056 4.45553 4.49399 4.56597 4.84179 4.86059 4.86262 4.93603 5.00335 5.03790 5.13259 5.21291 5.23008 5.27791 5.40895 5.52203 5.53895 5.64293 6.13148 6.27973 6.59365 6.84214 7.19143 7.41404 8.77120 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.002686 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.526729 B =10423.458790 C =10780.713753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.023 0.977 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.260 1.260 11 H -0.297 1.297 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.516 3.484 15 O -0.572 6.572 16 C -0.137 4.137 17 H 0.120 0.880 18 C 0.075 3.925 19 O -0.310 6.310 20 C 0.119 3.881 21 C -0.135 4.135 22 C -0.076 4.076 23 C -0.074 4.074 24 Cl -0.071 7.071 25 C -0.080 4.080 26 C -0.149 4.149 27 C -0.055 4.055 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.269 0.731 34 H 0.407 0.593 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.550 6.245 -16.509 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.041 0.959 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.224 1.224 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.302 3.698 15 O -0.452 6.452 16 C -0.158 4.158 17 H 0.138 0.862 18 C -0.001 4.001 19 O -0.223 6.223 20 C 0.074 3.926 21 C -0.154 4.154 22 C -0.094 4.094 23 C -0.100 4.100 24 Cl -0.042 7.042 25 C -0.098 4.098 26 C -0.150 4.150 27 C -0.092 4.092 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.103 0.897 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.912 6.210 -15.891 24.737 hybrid contribution 0.316 -0.193 1.061 1.124 sum -17.595 6.018 -14.830 23.785 Atomic orbital electron populations 1.21770 0.95128 1.00588 1.01668 1.22213 0.95875 0.98388 1.01169 1.18791 0.93107 0.89739 0.83883 0.95916 1.21302 0.90444 1.38401 1.06890 0.92442 1.25540 0.95663 0.95960 0.99869 1.69974 1.10306 1.46208 1.30835 0.86053 0.79339 0.79984 0.78330 1.18580 1.22419 1.18372 1.46031 1.15671 1.55815 1.17096 1.20491 0.81657 0.78243 0.89432 1.90679 1.52261 1.60439 1.41796 1.21941 1.00061 1.00472 0.93346 0.86182 1.23053 1.04510 0.92165 0.80331 1.86043 1.43858 1.56126 1.36321 1.19032 0.87972 0.91707 0.93904 1.20738 0.97409 1.00841 0.96385 1.21031 0.94482 0.95606 0.98287 1.20849 0.94181 0.99815 0.95189 1.98365 1.43486 1.63626 1.98708 1.20899 0.95131 0.96333 0.97482 1.19772 0.99033 1.01737 0.94480 1.20236 0.93720 1.02251 0.92987 0.92381 0.94548 0.92384 0.90979 0.94021 0.92138 0.75743 0.84998 0.90539 0.82345 0.82026 0.83995 0.89718 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 8.51 71.98 0.61 -4.17 16 2 C -0.14 -5.56 5.11 30.60 0.16 -5.41 16 3 C 0.25 11.03 1.83 44.25 0.08 11.11 16 4 H 0.02 1.15 6.64 -2.39 -0.02 1.13 16 5 C -0.53 -27.84 9.31 25.60 0.24 -27.60 16 6 H 0.06 3.20 7.98 -2.91 -0.02 3.18 16 7 C 0.03 1.62 5.45 84.66 0.46 2.08 16 8 N -0.93 -55.11 13.96 21.45 0.30 -54.81 16 9 Si 0.94 43.76 24.41 68.60 1.67 45.44 16 10 H -0.26 -11.44 6.83 99.48 0.68 -10.76 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.26 -11.97 6.53 99.48 0.65 -11.32 16 13 N -0.70 -24.29 4.91 -446.09 -2.19 -26.48 16 14 C 0.52 16.49 5.72 87.66 0.50 16.99 16 15 O -0.57 -22.14 12.93 -3.05 -0.04 -22.18 16 16 C -0.14 -3.20 2.75 -11.38 -0.03 -3.23 16 17 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 18 C 0.07 1.49 6.26 72.12 0.45 1.94 16 19 O -0.31 -6.48 10.27 -91.99 -0.94 -7.42 16 20 C 0.12 2.43 6.47 22.50 0.15 2.58 16 21 C -0.14 -2.22 9.92 22.37 0.22 -2.00 16 22 C -0.08 -1.13 9.82 22.19 0.22 -0.92 16 23 C -0.07 -1.30 6.32 22.30 0.14 -1.16 16 24 Cl -0.07 -1.17 28.96 -2.72 -0.08 -1.25 16 25 C -0.08 -1.53 9.45 22.33 0.21 -1.32 16 26 C -0.15 -3.11 5.75 -19.77 -0.11 -3.22 16 27 C -0.05 -1.25 4.67 29.90 0.14 -1.11 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.41 7.85 -2.39 -0.02 1.39 16 30 H 0.06 1.96 5.65 -2.39 -0.01 1.94 16 31 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.04 1.79 3.21 -2.39 -0.01 1.79 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.41 12.26 8.01 -92.70 -0.74 11.52 16 35 H 0.13 2.24 7.57 -2.39 -0.02 2.22 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.08 2.09 7.69 -2.39 -0.02 2.07 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.88 341.02 2.40 -61.49 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.24 Total: 20.63 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 3.43 Total: -15.42 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.89 Total: -81.29 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.98 Total: -29.60 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.67 Total: 45.44 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -63.88 2.40 -61.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.958 kcal (2) G-P(sol) polarization free energy of solvation -63.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds