Wall clock time and date at job start Tue Mar 31 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46443 * 2 1 4 4 H 1.08991 * 109.47648 * 305.00340 * 3 2 1 5 5 C 1.50699 * 109.46501 * 185.00060 * 3 2 1 6 6 H 1.08010 * 119.99765 * 239.99884 * 5 3 2 7 7 C 1.37874 * 120.00131 * 60.00771 * 5 3 2 8 8 N 1.31506 * 120.00148 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99899 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47468 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47132 * 119.99811 * 9 7 5 12 12 H 1.48504 * 109.46906 * 239.99280 * 9 7 5 13 13 N 1.46501 * 109.47148 * 65.00507 * 3 2 1 14 14 C 1.34776 * 120.00128 * 274.99873 * 13 3 2 15 15 O 1.21285 * 119.99353 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00357 * 180.02562 * 14 13 3 17 17 H 1.09006 * 109.72716 * 300.57597 * 16 14 13 18 18 C 1.53402 * 109.70350 * 61.16052 * 16 14 13 19 19 O 1.42821 * 108.39333 * 184.40656 * 18 16 14 20 20 C 1.35875 * 117.87310 * 310.87623 * 19 18 16 21 21 C 1.39142 * 118.49055 * 197.12296 * 20 19 18 22 22 C 1.37967 * 120.23307 * 180.22989 * 21 20 19 23 23 C 1.38386 * 119.94739 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.02278 * 179.88389 * 23 22 21 25 25 C 1.38206 * 119.95477 * 359.90625 * 23 22 21 26 26 C 1.38367 * 121.79728 * 17.19270 * 20 19 18 27 27 C 1.50775 * 121.40407 * 359.45086 * 26 20 19 28 28 H 1.08994 * 109.47428 * 59.99943 * 1 2 3 29 29 H 1.09008 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47099 * 299.99463 * 1 2 3 31 31 H 1.08998 * 109.47099 * 240.00537 * 2 1 3 32 32 H 1.08994 * 109.47428 * 120.00057 * 2 1 3 33 33 H 0.97002 * 120.00591 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00098 * 94.98961 * 13 3 2 35 35 H 1.08999 * 109.67910 * 64.68012 * 18 16 14 36 36 H 1.09003 * 109.68291 * 304.13006 * 18 16 14 37 37 H 1.08001 * 119.88370 * 0.21257 * 21 20 19 38 38 H 1.07997 * 120.02489 * 179.97438 * 22 21 20 39 39 H 1.07997 * 119.85038 * 180.02562 * 25 23 22 40 40 H 1.08996 * 109.43385 * 137.98986 * 27 26 20 41 41 H 1.09002 * 109.43637 * 257.90738 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8891 0.6524 7 6 4.1431 0.8787 -1.2280 8 7 3.4061 0.3370 -2.1729 9 14 6.0048 0.8816 -1.3818 10 1 6.5986 1.5475 -0.1948 11 1 6.4970 -0.5171 -1.4631 12 1 6.3988 1.6171 -2.6103 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6643 1.3671 15 8 -0.3394 2.6325 0.4343 16 6 0.0365 3.3385 2.6546 17 1 0.0764 2.6203 3.4737 18 6 0.9890 4.5058 2.9435 19 8 0.6514 5.0584 4.2165 20 6 -0.6542 5.3472 4.4575 21 6 -0.9614 6.2003 5.5130 22 6 -2.2754 6.5141 5.7928 23 6 -3.2927 5.9789 5.0222 24 17 -4.9469 6.3700 5.3744 25 6 -2.9907 5.1324 3.9723 26 6 -1.6729 4.8165 3.6860 27 6 -1.3829 3.8969 2.5269 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8292 -0.0614 -2.9496 34 1 2.2718 2.1231 1.9978 35 1 0.8801 5.2679 2.1719 36 1 2.0173 4.1448 2.9611 37 1 -0.1684 6.6180 6.1156 38 1 -2.5100 7.1762 6.6131 39 1 -3.7858 4.7160 3.3717 40 1 -2.0980 3.0743 2.5289 41 1 -1.4710 4.4518 1.5928 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183932229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:15 Heat of formation + Delta-G solvation = -72.868886 kcal Electronic energy + Delta-G solvation = -24843.815662 eV Core-core repulsion = 21135.011556 eV Total energy + Delta-G solvation = -3708.804107 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07380 -39.16684 -37.90588 -36.39996 -35.35125 -34.12356 -32.53484 -31.41443 -30.40334 -30.31155 -27.13084 -25.84664 -24.56018 -23.05066 -22.88522 -21.12735 -19.80184 -19.35807 -18.07659 -17.65137 -16.65589 -16.53451 -15.79151 -15.34515 -15.22095 -14.89048 -14.42689 -14.34405 -13.93657 -13.83012 -13.57512 -13.43596 -13.05091 -12.75188 -12.61266 -12.37937 -12.10250 -11.67491 -11.58082 -11.31691 -11.19266 -11.05777 -10.99794 -10.89889 -10.82770 -10.66121 -10.36647 -10.24658 -9.70173 -9.17543 -9.12445 -9.06342 -8.57021 -8.30028 -7.94398 -6.18756 -4.28619 0.95018 0.98386 1.94137 3.00837 3.17702 3.19603 3.27865 3.29802 3.37167 3.86273 4.29332 4.43445 4.48793 4.54820 4.71142 4.86548 4.99692 5.10801 5.13071 5.18287 5.39371 5.43756 5.55927 5.64594 5.74526 5.86249 5.97443 6.01535 6.15332 6.31755 6.32785 6.38524 6.58809 6.96606 7.11455 7.16392 7.27778 7.34184 7.54357 7.64629 7.81929 8.10906 8.53784 8.69231 8.99066 9.38981 10.86523 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.026620 B = 0.002648 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.598548 B =10571.041603 C =11396.654721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.509 3.491 15 O -0.541 6.541 16 C -0.149 4.149 17 H 0.106 0.894 18 C 0.072 3.928 19 O -0.308 6.308 20 C 0.137 3.863 21 C -0.137 4.137 22 C -0.082 4.082 23 C -0.068 4.068 24 Cl -0.076 7.076 25 C -0.073 4.073 26 C -0.140 4.140 27 C -0.059 4.059 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 9.916 14.977 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.293 3.707 15 O -0.419 6.419 16 C -0.171 4.171 17 H 0.124 0.876 18 C -0.003 4.003 19 O -0.222 6.222 20 C 0.091 3.909 21 C -0.156 4.156 22 C -0.101 4.101 23 C -0.094 4.094 24 Cl -0.047 7.047 25 C -0.092 4.092 26 C -0.141 4.141 27 C -0.097 4.097 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.109 0.891 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.162 9.833 14.236 20.065 hybrid contribution 1.031 -0.194 0.108 1.054 sum -9.131 9.639 14.344 19.546 Atomic orbital electron populations 1.21840 0.98358 0.98117 1.01138 1.21941 0.92596 0.99792 1.02370 1.18824 0.94313 0.89219 0.80816 0.93203 1.21248 0.90619 1.39161 1.06323 0.92010 1.24884 0.98640 0.94747 0.95377 1.69894 1.35104 1.37505 1.09354 0.86408 0.84810 0.77825 0.78152 1.19714 1.20856 1.20871 1.46554 1.14369 1.55682 1.18677 1.19858 0.83052 0.79684 0.88109 1.90691 1.51281 1.59901 1.40021 1.22052 0.97026 0.98698 0.99360 0.87591 1.23038 0.99423 0.94509 0.83373 1.86035 1.21954 1.78139 1.36042 1.18813 0.83367 0.93831 0.94893 1.20529 0.96509 0.99483 0.99058 1.20779 0.90742 0.99399 0.99143 1.20696 0.85469 1.03298 0.99968 1.98359 1.18392 1.93359 1.94602 1.20796 0.96034 0.96498 0.95869 1.19903 0.92445 1.01689 1.00064 1.20324 0.95449 0.98036 0.95841 0.93130 0.95805 0.94390 0.88232 0.94998 0.92553 0.77915 0.90733 0.86372 0.84245 0.84468 0.84566 0.89134 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.39 2.24 -69.08 -0.15 6.24 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.97 11.29 55.43 0.63 -23.34 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.71 -13.24 4.91 -54.94 -0.27 -13.51 16 14 C 0.51 8.97 5.72 -10.99 -0.06 8.90 16 15 O -0.54 -11.41 12.93 5.55 0.07 -11.34 16 16 C -0.15 -1.97 2.76 -91.53 -0.25 -2.23 16 17 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 18 C 0.07 0.86 6.26 37.37 0.23 1.09 16 19 O -0.31 -3.76 10.27 -19.35 -0.20 -3.95 16 20 C 0.14 1.61 6.47 -39.20 -0.25 1.36 16 21 C -0.14 -1.37 9.94 -39.35 -0.39 -1.76 16 22 C -0.08 -0.76 9.83 -39.63 -0.39 -1.15 16 23 C -0.07 -0.69 6.32 -39.54 -0.25 -0.94 16 24 Cl -0.08 -0.72 28.96 -51.86 -1.50 -2.22 16 25 C -0.07 -0.79 9.45 -39.49 -0.37 -1.16 16 26 C -0.14 -1.64 5.75 -104.44 -0.60 -2.24 16 27 C -0.06 -0.75 4.66 -27.81 -0.13 -0.88 16 28 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 29 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.04 0.78 5.65 -51.93 -0.29 0.48 16 31 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.39 6.27 8.02 -40.82 -0.33 5.94 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 1.27 7.57 -51.93 -0.39 0.87 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.10 1.31 7.69 -51.93 -0.40 0.91 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -28.43 347.81 -9.34 -37.77 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.45 Total: 7.02 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.85 Total: -10.63 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.36 Total: -36.85 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.13 Total: -15.30 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.43 -9.34 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.096 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds