Wall clock time and date at job start Tue Mar 31 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46443 * 2 1 4 4 H 1.08991 * 109.47648 * 305.00340 * 3 2 1 5 5 C 1.50699 * 109.46501 * 185.00060 * 3 2 1 6 6 H 1.08010 * 119.99765 * 239.99884 * 5 3 2 7 7 C 1.37874 * 120.00131 * 60.00771 * 5 3 2 8 8 N 1.31506 * 120.00148 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99899 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47468 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47132 * 119.99811 * 9 7 5 12 12 H 1.48504 * 109.46906 * 239.99280 * 9 7 5 13 13 N 1.46501 * 109.47148 * 65.00507 * 3 2 1 14 14 C 1.34776 * 120.00128 * 274.99873 * 13 3 2 15 15 O 1.21285 * 119.99353 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00357 * 180.02562 * 14 13 3 17 17 H 1.09006 * 109.72716 * 300.57597 * 16 14 13 18 18 C 1.53402 * 109.70350 * 61.16052 * 16 14 13 19 19 O 1.42821 * 108.39333 * 184.40656 * 18 16 14 20 20 C 1.35875 * 117.87310 * 310.87623 * 19 18 16 21 21 C 1.39142 * 118.49055 * 197.12296 * 20 19 18 22 22 C 1.37967 * 120.23307 * 180.22989 * 21 20 19 23 23 C 1.38386 * 119.94739 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.02278 * 179.88389 * 23 22 21 25 25 C 1.38206 * 119.95477 * 359.90625 * 23 22 21 26 26 C 1.38367 * 121.79728 * 17.19270 * 20 19 18 27 27 C 1.50775 * 121.40407 * 359.45086 * 26 20 19 28 28 H 1.08994 * 109.47428 * 59.99943 * 1 2 3 29 29 H 1.09008 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47099 * 299.99463 * 1 2 3 31 31 H 1.08998 * 109.47099 * 240.00537 * 2 1 3 32 32 H 1.08994 * 109.47428 * 120.00057 * 2 1 3 33 33 H 0.97002 * 120.00591 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00098 * 94.98961 * 13 3 2 35 35 H 1.08999 * 109.67910 * 64.68012 * 18 16 14 36 36 H 1.09003 * 109.68291 * 304.13006 * 18 16 14 37 37 H 1.08001 * 119.88370 * 0.21257 * 21 20 19 38 38 H 1.07997 * 120.02489 * 179.97438 * 22 21 20 39 39 H 1.07997 * 119.85038 * 180.02562 * 25 23 22 40 40 H 1.08996 * 109.43385 * 137.98986 * 27 26 20 41 41 H 1.09002 * 109.43637 * 257.90738 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8891 0.6524 7 6 4.1431 0.8787 -1.2280 8 7 3.4061 0.3370 -2.1729 9 14 6.0048 0.8816 -1.3818 10 1 6.5986 1.5475 -0.1948 11 1 6.4970 -0.5171 -1.4631 12 1 6.3988 1.6171 -2.6103 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6643 1.3671 15 8 -0.3394 2.6325 0.4343 16 6 0.0365 3.3385 2.6546 17 1 0.0764 2.6203 3.4737 18 6 0.9890 4.5058 2.9435 19 8 0.6514 5.0584 4.2165 20 6 -0.6542 5.3472 4.4575 21 6 -0.9614 6.2003 5.5130 22 6 -2.2754 6.5141 5.7928 23 6 -3.2927 5.9789 5.0222 24 17 -4.9469 6.3700 5.3744 25 6 -2.9907 5.1324 3.9723 26 6 -1.6729 4.8165 3.6860 27 6 -1.3829 3.8969 2.5269 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8292 -0.0614 -2.9496 34 1 2.2718 2.1231 1.9978 35 1 0.8801 5.2679 2.1719 36 1 2.0173 4.1448 2.9611 37 1 -0.1684 6.6180 6.1156 38 1 -2.5100 7.1762 6.6131 39 1 -3.7858 4.7160 3.3717 40 1 -2.0980 3.0743 2.5289 41 1 -1.4710 4.4518 1.5928 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183932229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:15 Heat of formation + Delta-G solvation = -88.478691 kcal Electronic energy + Delta-G solvation = -24844.492554 eV Core-core repulsion = 21135.011556 eV Total energy + Delta-G solvation = -3709.480999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.05207 -40.55938 -38.78597 -37.18267 -37.05839 -35.24538 -34.31598 -32.95388 -31.62206 -31.13879 -28.95504 -26.81028 -25.79503 -24.73210 -23.74785 -22.44375 -21.36409 -20.75614 -19.08673 -18.94660 -17.89117 -17.65795 -17.05919 -17.00521 -16.44290 -16.15361 -15.78175 -15.41250 -15.15867 -14.91487 -14.65250 -14.55934 -14.35755 -14.13606 -13.74946 -13.51398 -13.42414 -13.28465 -13.15163 -12.86521 -12.70636 -12.52188 -12.20334 -12.13592 -12.03528 -11.83839 -11.73231 -11.58952 -11.56461 -11.02978 -10.68232 -10.50442 -9.93750 -9.64345 -9.14590 -8.15469 -6.32181 0.13109 0.18230 1.16381 1.44455 1.46677 1.57348 1.73519 2.13693 2.34359 2.51639 2.61437 3.14680 3.43473 3.52016 3.63393 3.75317 3.93825 4.06796 4.16696 4.32556 4.41267 4.48968 4.50224 4.54833 4.58097 4.77143 4.84994 4.86109 4.93220 5.01094 5.07634 5.20896 5.26919 5.28340 5.44123 5.52586 5.56849 5.62533 5.80281 5.92075 6.18049 6.27219 6.76358 6.95317 7.34441 7.54798 8.89907 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.026620 B = 0.002648 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.598548 B =10571.041603 C =11396.654721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.544 4.544 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.578 6.578 16 C -0.135 4.135 17 H 0.124 0.876 18 C 0.075 3.925 19 O -0.309 6.309 20 C 0.118 3.882 21 C -0.134 4.134 22 C -0.075 4.075 23 C -0.073 4.073 24 Cl -0.070 7.070 25 C -0.080 4.080 26 C -0.149 4.149 27 C -0.055 4.055 28 H 0.026 0.974 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.142 0.858 40 H 0.089 0.911 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 10.799 17.570 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.350 5.350 14 C 0.297 3.703 15 O -0.458 6.458 16 C -0.156 4.156 17 H 0.142 0.858 18 C 0.000 4.000 19 O -0.222 6.222 20 C 0.073 3.927 21 C -0.153 4.153 22 C -0.094 4.094 23 C -0.100 4.100 24 Cl -0.041 7.041 25 C -0.099 4.099 26 C -0.150 4.150 27 C -0.092 4.092 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.159 0.841 40 H 0.108 0.892 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.665 10.734 16.877 22.214 hybrid contribution 0.770 -0.411 -0.674 1.103 sum -8.895 10.324 16.202 21.171 Atomic orbital electron populations 1.21681 0.96980 0.99116 1.00311 1.21797 0.93745 0.99315 1.01292 1.18375 0.93629 0.89116 0.81393 0.98102 1.21612 0.91440 1.38650 1.06543 0.90801 1.25734 1.03031 0.94518 0.95170 1.70046 1.36914 1.38489 1.09927 0.85375 0.79511 0.77702 0.78214 1.18275 1.20732 1.21233 1.46282 1.15369 1.55734 1.17646 1.20526 0.81949 0.78731 0.89132 1.90682 1.52244 1.61027 1.41876 1.21935 0.97636 0.99226 0.96833 0.85805 1.23015 0.99680 0.93741 0.83553 1.86040 1.22291 1.78236 1.35669 1.19072 0.83093 0.94769 0.95782 1.20800 0.97394 0.98651 0.98443 1.21092 0.90136 0.98907 0.99224 1.20839 0.86112 1.03131 0.99886 1.98364 1.17979 1.93260 1.94508 1.20891 0.95865 0.96796 0.96313 1.19790 0.93045 1.02181 0.99993 1.20222 0.95100 0.98111 0.95804 0.95514 0.93790 0.93580 0.91148 0.94037 0.92695 0.76060 0.91258 0.84941 0.82233 0.81910 0.84053 0.89250 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.80 5.45 30.60 0.17 -5.63 16 3 C 0.28 13.46 2.24 44.25 0.10 13.56 16 4 H 0.00 0.06 7.58 -2.39 -0.02 0.05 16 5 C -0.54 -27.37 8.73 25.60 0.22 -27.14 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -51.10 11.29 21.45 0.24 -50.86 16 9 Si 0.97 40.87 29.54 68.60 2.03 42.90 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 12 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.70 -26.15 4.91 -446.11 -2.19 -28.33 16 14 C 0.51 17.97 5.72 87.66 0.50 18.47 16 15 O -0.58 -25.09 12.93 -3.05 -0.04 -25.13 16 16 C -0.13 -3.42 2.76 -11.38 -0.03 -3.45 16 17 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 18 C 0.08 1.69 6.26 72.12 0.45 2.14 16 19 O -0.31 -6.89 10.27 -92.14 -0.95 -7.83 16 20 C 0.12 2.56 6.47 22.52 0.15 2.71 16 21 C -0.13 -2.31 9.94 22.42 0.22 -2.09 16 22 C -0.08 -1.18 9.83 22.24 0.22 -0.96 16 23 C -0.07 -1.34 6.32 22.30 0.14 -1.20 16 24 Cl -0.07 -1.20 28.96 -2.72 -0.08 -1.28 16 25 C -0.08 -1.63 9.45 22.33 0.21 -1.42 16 26 C -0.15 -3.34 5.75 -19.75 -0.11 -3.45 16 27 C -0.06 -1.38 4.66 29.89 0.14 -1.24 16 28 H 0.03 1.24 7.85 -2.39 -0.02 1.23 16 29 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.05 1.88 5.65 -2.39 -0.01 1.87 16 31 H 0.07 3.78 5.95 -2.39 -0.01 3.77 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.26 14.01 8.31 -92.71 -0.77 13.23 16 34 H 0.40 12.48 8.02 -92.71 -0.74 11.74 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.13 2.57 7.57 -2.39 -0.02 2.55 16 37 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 41 H 0.08 2.21 7.69 -2.39 -0.02 2.20 16 Total: -1.00 -62.22 347.81 2.77 -59.45 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.32 Total: 24.25 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.44 Total: -13.16 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -1.95 Total: -79.19 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.99 Total: -32.97 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -62.22 2.77 -59.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.026 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds