Wall clock time and date at job start Tue Mar 31 2020 14:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46962 * 2 1 4 4 H 1.08995 * 109.46985 * 305.68836 * 3 2 1 5 5 C 1.50703 * 109.46719 * 185.69399 * 3 2 1 6 6 H 1.08004 * 120.00018 * 274.99694 * 5 3 2 7 7 C 1.37870 * 120.00105 * 95.00705 * 5 3 2 8 8 N 1.31523 * 120.00364 * 184.82728 * 7 5 3 9 9 Si 1.86797 * 120.00042 * 4.82490 * 7 5 3 10 10 H 1.48498 * 109.47285 * 84.86356 * 9 7 5 11 11 H 1.48501 * 109.47215 * 204.86487 * 9 7 5 12 12 H 1.48502 * 109.47135 * 324.86137 * 9 7 5 13 13 N 1.46502 * 109.47122 * 65.69439 * 3 2 1 14 14 C 1.34771 * 119.99827 * 274.99592 * 13 3 2 15 15 O 1.21281 * 120.00079 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00090 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.72509 * 59.42575 * 16 14 13 18 18 C 1.53310 * 109.64275 * 298.87936 * 16 14 13 19 19 O 1.42833 * 108.35327 * 175.56741 * 18 16 14 20 20 C 1.35872 * 117.85743 * 49.19509 * 19 18 16 21 21 C 1.39130 * 118.48169 * 163.02894 * 20 19 18 22 22 C 1.37966 * 120.23849 * 179.57759 * 21 20 19 23 23 C 1.38388 * 119.93926 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.02220 * 180.08917 * 23 22 21 25 25 C 1.38206 * 119.95637 * 0.06326 * 23 22 21 26 26 C 1.38373 * 121.79785 * 342.73925 * 20 19 18 27 27 C 1.50767 * 121.40453 * 0.52371 * 26 20 19 28 28 H 1.08999 * 109.46815 * 300.00163 * 1 2 3 29 29 H 1.08995 * 109.46789 * 60.00410 * 1 2 3 30 30 H 1.08994 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47360 * 239.99585 * 2 1 3 32 32 H 1.09005 * 109.46690 * 119.99630 * 2 1 3 33 33 H 0.96994 * 120.00035 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99812 * 95.00287 * 13 3 2 35 35 H 1.08996 * 109.69869 * 55.84735 * 18 16 14 36 36 H 1.08997 * 109.68265 * 295.27249 * 18 16 14 37 37 H 1.08003 * 119.88179 * 359.57558 * 21 20 19 38 38 H 1.07996 * 120.02934 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.84573 * 179.97438 * 25 23 22 40 40 H 1.08996 * 109.43755 * 102.23321 * 27 26 20 41 41 H 1.09004 * 109.43397 * 222.14394 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5893 -1.3856 8 7 5.4206 1.4964 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7754 3.3739 -2.9864 11 1 3.7402 1.4495 -4.1028 12 1 1.7562 1.1881 -2.7331 13 7 1.6668 2.0924 1.2588 14 6 0.4509 2.6588 1.3901 15 8 -0.3344 2.6301 0.4663 16 6 0.0671 3.3279 2.6847 17 1 0.7646 4.1370 2.9016 18 6 0.0958 2.3018 3.8234 19 8 -0.1696 2.9836 5.0501 20 6 -1.2419 3.8170 5.0941 21 6 -1.7299 4.2051 6.3379 22 6 -2.8115 5.0572 6.4248 23 6 -3.4144 5.5278 5.2714 24 17 -4.7740 6.6019 5.3783 25 6 -2.9330 5.1426 4.0345 26 6 -1.8478 4.2870 3.9423 27 6 -1.3536 3.8869 2.5753 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8252 1.5977 -2.3975 34 1 2.2948 2.1151 1.9977 35 1 1.0781 1.8317 3.8697 36 1 -0.6675 1.5426 3.6528 37 1 -1.2604 3.8380 7.2386 38 1 -3.1878 5.3560 7.3919 39 1 -3.4052 5.5106 3.1356 40 1 -2.0124 3.1242 2.1603 41 1 -1.3509 4.7588 1.9211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183932268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:21 Heat of formation + Delta-G solvation = -73.258539 kcal Electronic energy + Delta-G solvation = -24971.229616 eV Core-core repulsion = 21262.408613 eV Total energy + Delta-G solvation = -3708.821003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13363 -39.30735 -37.95366 -36.42925 -35.49666 -34.19507 -32.49467 -31.81443 -30.63396 -30.34820 -27.63673 -25.90655 -24.61738 -22.98705 -22.82377 -21.28393 -19.88433 -19.55942 -18.12222 -17.77145 -16.84198 -16.64489 -15.99062 -15.58184 -15.27635 -15.00080 -14.51707 -14.25098 -13.98300 -13.86533 -13.61739 -13.51393 -13.29158 -12.83717 -12.70423 -12.45532 -12.26325 -12.00738 -11.91029 -11.70684 -11.24690 -11.09501 -11.01339 -10.89271 -10.78236 -10.75007 -10.68310 -10.08728 -9.91188 -9.32248 -9.24968 -9.13579 -8.77022 -8.33604 -8.14177 -6.30182 -4.34565 0.91679 0.95250 1.91441 2.94969 3.06799 3.21069 3.29342 3.32854 3.35660 3.75195 4.26143 4.38721 4.42258 4.48932 4.65392 4.82521 4.92137 5.03343 5.07918 5.15514 5.32832 5.36842 5.49137 5.60988 5.70861 5.81519 5.93032 5.95718 5.97068 6.00258 6.10602 6.16017 6.28289 6.55135 6.69738 6.87166 6.90488 7.11490 7.19124 7.26035 7.46305 8.02869 8.44894 8.69286 8.82063 9.31387 10.81392 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.002789 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.029565 B =10036.890968 C =10386.352201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.700 5.700 14 C 0.509 3.491 15 O -0.545 6.545 16 C -0.150 4.150 17 H 0.109 0.891 18 C 0.072 3.928 19 O -0.307 6.307 20 C 0.136 3.864 21 C -0.136 4.136 22 C -0.082 4.082 23 C -0.067 4.067 24 Cl -0.075 7.075 25 C -0.073 4.073 26 C -0.140 4.140 27 C -0.059 4.059 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.360 5.462 14.941 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.348 5.348 14 C 0.293 3.707 15 O -0.424 6.424 16 C -0.172 4.172 17 H 0.128 0.872 18 C -0.003 4.003 19 O -0.221 6.221 20 C 0.091 3.909 21 C -0.155 4.155 22 C -0.100 4.100 23 C -0.094 4.094 24 Cl -0.047 7.047 25 C -0.092 4.092 26 C -0.141 4.141 27 C -0.097 4.097 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.113 0.887 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.704 5.468 14.266 21.910 hybrid contribution -0.211 0.358 -0.719 0.830 sum -15.914 5.826 13.548 21.697 Atomic orbital electron populations 1.21908 0.97448 0.98918 1.01939 1.22078 0.93603 0.99387 1.01360 1.19204 0.95607 0.89122 0.82672 0.93041 1.20996 0.88610 1.51961 0.95500 0.90305 1.24941 0.94874 0.93627 0.98827 1.69879 1.09775 1.48056 1.24579 0.86910 0.81252 0.79627 0.82258 1.19874 1.21168 1.18342 1.46679 1.14216 1.55510 1.18385 1.19982 0.83015 0.79329 0.88373 1.90677 1.50879 1.59705 1.41139 1.22043 0.99576 1.00183 0.95398 0.87247 1.23006 1.03623 0.92800 0.80859 1.86045 1.43229 1.56263 1.36526 1.18807 0.87649 0.91235 0.93235 1.20529 0.97617 1.01243 0.96135 1.20786 0.95057 0.96539 0.97638 1.20700 0.93989 0.99752 0.94958 1.98361 1.43842 1.63856 1.98608 1.20793 0.95312 0.96433 0.96668 1.19886 0.98318 1.00830 0.95092 1.20322 0.94466 1.02702 0.92162 0.93332 0.93061 0.95023 0.92000 0.92952 0.92161 0.77320 0.86404 0.90857 0.84206 0.84433 0.84578 0.88741 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.53 37.16 0.32 -2.37 16 2 C -0.13 -2.54 5.59 -26.73 -0.15 -2.69 16 3 C 0.24 5.22 1.89 -69.08 -0.13 5.09 16 4 H 0.05 1.26 4.73 -51.93 -0.25 1.01 16 5 C -0.53 -13.64 9.05 -34.44 -0.31 -13.95 16 6 H 0.08 2.13 8.06 -52.48 -0.42 1.71 16 7 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 9 Si 0.87 20.93 26.99 -169.99 -4.59 16.34 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.26 -6.09 6.82 56.52 0.39 -5.70 16 13 N -0.70 -12.60 4.91 -54.93 -0.27 -12.87 16 14 C 0.51 8.54 5.75 -10.99 -0.06 8.48 16 15 O -0.55 -10.87 12.93 5.56 0.07 -10.80 16 16 C -0.15 -1.91 2.75 -91.58 -0.25 -2.16 16 17 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.07 0.81 6.26 37.32 0.23 1.04 16 19 O -0.31 -3.60 10.27 -19.34 -0.20 -3.80 16 20 C 0.14 1.55 6.47 -39.20 -0.25 1.30 16 21 C -0.14 -1.32 9.93 -39.35 -0.39 -1.71 16 22 C -0.08 -0.73 9.83 -39.63 -0.39 -1.12 16 23 C -0.07 -0.67 6.32 -39.54 -0.25 -0.92 16 24 Cl -0.08 -0.70 28.96 -51.86 -1.50 -2.20 16 25 C -0.07 -0.77 9.45 -39.49 -0.37 -1.14 16 26 C -0.14 -1.59 5.75 -104.44 -0.60 -2.19 16 27 C -0.06 -0.72 4.67 -27.82 -0.13 -0.85 16 28 H 0.05 0.87 5.63 -51.93 -0.29 0.58 16 29 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.39 6.20 8.06 -40.82 -0.33 5.87 16 35 H 0.12 1.16 7.56 -51.93 -0.39 0.77 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.09 1.22 7.69 -51.93 -0.40 0.82 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -29.49 347.69 -8.76 -38.25 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.45 Total: 5.61 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.84 Total: -11.08 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.50 Total: -37.56 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.13 Total: -14.59 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.49 -8.76 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.005 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds