Wall clock time and date at job start Tue Mar 31 2020 14:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46962 * 2 1 4 4 H 1.08995 * 109.46985 * 305.68836 * 3 2 1 5 5 C 1.50703 * 109.46719 * 185.69399 * 3 2 1 6 6 H 1.08004 * 120.00018 * 274.99694 * 5 3 2 7 7 C 1.37870 * 120.00105 * 95.00705 * 5 3 2 8 8 N 1.31523 * 120.00364 * 184.82728 * 7 5 3 9 9 Si 1.86797 * 120.00042 * 4.82490 * 7 5 3 10 10 H 1.48498 * 109.47285 * 84.86356 * 9 7 5 11 11 H 1.48501 * 109.47215 * 204.86487 * 9 7 5 12 12 H 1.48502 * 109.47135 * 324.86137 * 9 7 5 13 13 N 1.46502 * 109.47122 * 65.69439 * 3 2 1 14 14 C 1.34771 * 119.99827 * 274.99592 * 13 3 2 15 15 O 1.21281 * 120.00079 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00090 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.72509 * 59.42575 * 16 14 13 18 18 C 1.53310 * 109.64275 * 298.87936 * 16 14 13 19 19 O 1.42833 * 108.35327 * 175.56741 * 18 16 14 20 20 C 1.35872 * 117.85743 * 49.19509 * 19 18 16 21 21 C 1.39130 * 118.48169 * 163.02894 * 20 19 18 22 22 C 1.37966 * 120.23849 * 179.57759 * 21 20 19 23 23 C 1.38388 * 119.93926 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.02220 * 180.08917 * 23 22 21 25 25 C 1.38206 * 119.95637 * 0.06326 * 23 22 21 26 26 C 1.38373 * 121.79785 * 342.73925 * 20 19 18 27 27 C 1.50767 * 121.40453 * 0.52371 * 26 20 19 28 28 H 1.08999 * 109.46815 * 300.00163 * 1 2 3 29 29 H 1.08995 * 109.46789 * 60.00410 * 1 2 3 30 30 H 1.08994 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47360 * 239.99585 * 2 1 3 32 32 H 1.09005 * 109.46690 * 119.99630 * 2 1 3 33 33 H 0.96994 * 120.00035 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99812 * 95.00287 * 13 3 2 35 35 H 1.08996 * 109.69869 * 55.84735 * 18 16 14 36 36 H 1.08997 * 109.68265 * 295.27249 * 18 16 14 37 37 H 1.08003 * 119.88179 * 359.57558 * 21 20 19 38 38 H 1.07996 * 120.02934 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.84573 * 179.97438 * 25 23 22 40 40 H 1.08996 * 109.43755 * 102.23321 * 27 26 20 41 41 H 1.09004 * 109.43397 * 222.14394 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5893 -1.3856 8 7 5.4206 1.4964 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7754 3.3739 -2.9864 11 1 3.7402 1.4495 -4.1028 12 1 1.7562 1.1881 -2.7331 13 7 1.6668 2.0924 1.2588 14 6 0.4509 2.6588 1.3901 15 8 -0.3344 2.6301 0.4663 16 6 0.0671 3.3279 2.6847 17 1 0.7646 4.1370 2.9016 18 6 0.0958 2.3018 3.8234 19 8 -0.1696 2.9836 5.0501 20 6 -1.2419 3.8170 5.0941 21 6 -1.7299 4.2051 6.3379 22 6 -2.8115 5.0572 6.4248 23 6 -3.4144 5.5278 5.2714 24 17 -4.7740 6.6019 5.3783 25 6 -2.9330 5.1426 4.0345 26 6 -1.8478 4.2870 3.9423 27 6 -1.3536 3.8869 2.5753 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8252 1.5977 -2.3975 34 1 2.2948 2.1151 1.9977 35 1 1.0781 1.8317 3.8697 36 1 -0.6675 1.5426 3.6528 37 1 -1.2604 3.8380 7.2386 38 1 -3.1878 5.3560 7.3919 39 1 -3.4052 5.5106 3.1356 40 1 -2.0124 3.1242 2.1603 41 1 -1.3509 4.7588 1.9211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183932268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:20 Heat of formation + Delta-G solvation = -90.387866 kcal Electronic energy + Delta-G solvation = -24971.972400 eV Core-core repulsion = 21262.408613 eV Total energy + Delta-G solvation = -3709.563787 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.07113 -40.62341 -38.78898 -37.18507 -37.09997 -35.25621 -34.40920 -33.25194 -31.68160 -31.13887 -29.40748 -26.81293 -25.73253 -24.55176 -23.75282 -22.48304 -21.39819 -20.82688 -19.31635 -18.94641 -18.16989 -17.69708 -17.26125 -16.96427 -16.43367 -16.16378 -15.82210 -15.41684 -15.05677 -14.99155 -14.78101 -14.59218 -14.55116 -14.19083 -13.80454 -13.71313 -13.64993 -13.46563 -13.27868 -12.94506 -12.59955 -12.52739 -12.34802 -12.15014 -11.89987 -11.84515 -11.73278 -11.69748 -11.54751 -11.20022 -10.84436 -10.68184 -9.93652 -9.72352 -9.14488 -8.39096 -6.44613 0.13133 0.18164 1.16276 1.28318 1.33684 1.43237 1.68557 2.13313 2.26273 2.38266 2.56600 3.02125 3.42980 3.51548 3.62015 3.75642 3.92274 4.06324 4.15388 4.32402 4.33180 4.41187 4.44046 4.48383 4.51683 4.60448 4.83663 4.85505 4.86506 4.93076 5.00594 5.13435 5.20867 5.25154 5.27183 5.29285 5.42226 5.52610 5.57457 5.76787 6.12171 6.27809 6.61605 6.87946 7.21245 7.43290 8.75880 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.002789 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.029565 B =10036.890968 C =10386.352201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.241 3.759 4 H 0.030 0.970 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.923 3.077 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.253 1.253 13 N -0.700 5.700 14 C 0.513 3.487 15 O -0.575 6.575 16 C -0.138 4.138 17 H 0.119 0.881 18 C 0.076 3.924 19 O -0.310 6.310 20 C 0.119 3.881 21 C -0.135 4.135 22 C -0.076 4.076 23 C -0.073 4.073 24 Cl -0.071 7.071 25 C -0.080 4.080 26 C -0.149 4.149 27 C -0.055 4.055 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.270 0.730 34 H 0.405 0.595 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.023 5.663 16.649 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.048 0.952 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.749 3.251 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.177 1.177 13 N -0.349 5.349 14 C 0.299 3.701 15 O -0.455 6.455 16 C -0.159 4.159 17 H 0.137 0.863 18 C 0.000 4.000 19 O -0.224 6.224 20 C 0.074 3.926 21 C -0.154 4.154 22 C -0.094 4.094 23 C -0.100 4.100 24 Cl -0.042 7.042 25 C -0.099 4.099 26 C -0.150 4.150 27 C -0.092 4.092 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.241 0.759 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.103 0.897 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.383 5.677 16.004 24.301 hybrid contribution 0.248 0.340 -1.136 1.212 sum -17.135 6.016 14.868 23.470 Atomic orbital electron populations 1.21781 0.95767 1.00333 1.01260 1.21984 0.95005 0.97856 1.01370 1.18918 0.93138 0.90385 0.83815 0.95176 1.21232 0.90411 1.50164 0.94516 0.92395 1.25587 0.95667 0.94078 1.01385 1.69979 1.11268 1.50460 1.25220 0.86102 0.80059 0.79206 0.79778 1.20145 1.20659 1.17740 1.46382 1.15260 1.55814 1.17431 1.20519 0.81874 0.78339 0.89373 1.90669 1.51607 1.60595 1.42661 1.21936 1.00048 1.00501 0.93462 0.86303 1.23026 1.04589 0.92201 0.80147 1.86048 1.43537 1.56483 1.36293 1.19055 0.87949 0.91722 0.93912 1.20796 0.97531 1.00838 0.96200 1.21088 0.94371 0.95553 0.98397 1.20844 0.94193 0.99822 0.95153 1.98365 1.43560 1.63666 1.98585 1.20894 0.95230 0.96401 0.97361 1.19793 0.99002 1.01681 0.94523 1.20230 0.93860 1.02233 0.92887 0.92822 0.94904 0.92523 0.93344 0.91634 0.92113 0.75917 0.84997 0.90583 0.82301 0.82001 0.84037 0.89742 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.53 71.98 0.61 -4.14 16 2 C -0.12 -4.86 5.59 30.60 0.17 -4.69 16 3 C 0.24 10.55 1.89 44.25 0.08 10.64 16 4 H 0.03 1.47 4.73 -2.39 -0.01 1.46 16 5 C -0.52 -27.08 9.05 25.60 0.23 -26.85 16 6 H 0.06 3.18 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.82 5.47 84.65 0.46 2.28 16 8 N -0.93 -54.44 13.96 21.45 0.30 -54.14 16 9 Si 0.92 43.57 26.99 68.60 1.85 45.42 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.25 -11.60 6.82 99.48 0.68 -10.92 16 13 N -0.70 -24.53 4.91 -446.10 -2.19 -26.72 16 14 C 0.51 16.66 5.75 87.66 0.50 17.16 16 15 O -0.57 -22.54 12.93 -3.03 -0.04 -22.58 16 16 C -0.14 -3.30 2.75 -11.41 -0.03 -3.34 16 17 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 18 C 0.08 1.53 6.26 72.09 0.45 1.98 16 19 O -0.31 -6.57 10.27 -92.11 -0.95 -7.52 16 20 C 0.12 2.47 6.47 22.52 0.15 2.61 16 21 C -0.14 -2.25 9.93 22.42 0.22 -2.02 16 22 C -0.08 -1.15 9.83 22.24 0.22 -0.93 16 23 C -0.07 -1.31 6.32 22.30 0.14 -1.17 16 24 Cl -0.07 -1.18 28.96 -2.72 -0.08 -1.26 16 25 C -0.08 -1.57 9.45 22.33 0.21 -1.36 16 26 C -0.15 -3.17 5.75 -19.75 -0.11 -3.28 16 27 C -0.05 -1.28 4.67 29.89 0.14 -1.14 16 28 H 0.05 1.83 5.63 -2.39 -0.01 1.81 16 29 H 0.03 1.27 7.89 -2.39 -0.02 1.25 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.39 8.14 -2.38 -0.02 2.38 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.41 12.30 8.06 -92.71 -0.75 11.55 16 35 H 0.13 2.28 7.56 -2.39 -0.02 2.26 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.08 2.13 7.69 -2.39 -0.02 2.12 16 41 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -63.09 347.69 2.63 -60.46 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.28 Total: 20.59 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 3.45 Total: -14.24 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -1.89 Total: -80.86 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.99 Total: -30.10 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.85 Total: 45.42 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -63.09 2.63 -60.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.931 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds