Wall clock time and date at job start Tue Mar 31 2020 13:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.50701 * 109.46893 * 120.00041 * 2 1 3 5 5 O 1.21282 * 119.99750 * 240.69126 * 4 2 1 6 6 N 1.34771 * 119.99777 * 60.69710 * 4 2 1 7 7 C 1.47583 * 134.48987 * 185.26136 * 6 4 2 8 8 C 1.53938 * 86.11911 * 155.35681 * 7 6 4 9 9 O 1.42902 * 113.74314 * 269.15654 * 8 7 6 10 10 C 1.50700 * 113.74413 * 137.95260 * 8 7 6 11 11 H 1.08007 * 119.99803 * 5.41390 * 10 8 7 12 12 C 1.37879 * 120.00341 * 185.41518 * 10 8 7 13 13 N 1.31515 * 119.99912 * 15.01799 * 12 10 8 14 14 Si 1.86797 * 120.00063 * 195.02246 * 12 10 8 15 15 H 1.48501 * 109.47085 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.46956 * 299.99901 * 14 12 10 17 17 H 1.48502 * 109.47416 * 59.99777 * 14 12 10 18 18 C 1.47584 * 134.49802 * 5.26195 * 6 4 2 19 19 C 1.50699 * 109.46843 * 240.00083 * 2 1 3 20 20 C 1.38240 * 119.98419 * 233.47513 * 19 2 1 21 21 C 1.38220 * 120.01136 * 179.72490 * 20 19 2 22 22 C 1.38347 * 119.98514 * 0.55416 * 21 20 19 23 23 Cl 1.73598 * 120.01563 * 179.70402 * 22 21 20 24 24 C 1.38361 * 119.97463 * 359.71997 * 22 21 20 25 25 C 1.38210 * 119.98311 * 0.02562 * 24 22 21 26 26 H 1.09007 * 109.47446 * 302.92522 * 1 2 3 27 27 H 1.09002 * 109.47373 * 62.92417 * 1 2 3 28 28 H 1.08999 * 109.47499 * 182.92544 * 1 2 3 29 29 H 1.09000 * 109.46976 * 184.60249 * 3 2 1 30 30 H 1.09000 * 109.46950 * 304.60674 * 3 2 1 31 31 H 1.08999 * 109.46779 * 64.60756 * 3 2 1 32 32 H 1.09008 * 113.76791 * 41.05958 * 7 6 4 33 33 H 1.09004 * 113.87252 * 269.67572 * 7 6 4 34 34 H 0.96699 * 113.99637 * 172.49288 * 9 8 7 35 35 H 0.96997 * 119.99998 * 355.82653 * 13 12 10 36 36 H 1.08994 * 113.76976 * 90.33960 * 18 6 4 37 37 H 1.09000 * 113.76612 * 318.94041 * 18 6 4 38 38 H 1.07992 * 119.99467 * 0.02562 * 20 19 2 39 39 H 1.07999 * 120.00638 * 180.26878 * 21 20 19 40 40 H 1.07996 * 120.00633 * 180.02562 * 24 22 21 41 41 H 1.08007 * 119.98820 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7191 -0.1174 2.0351 6 7 1.7183 -2.0047 1.4366 7 6 1.9424 -2.9605 2.5386 8 6 0.7076 -3.7072 2.0025 9 8 -0.5225 -3.2836 2.5937 10 6 0.8652 -5.2059 1.9844 11 1 1.7478 -5.6612 2.4090 12 6 -0.1171 -5.9957 1.4257 13 7 -1.0361 -5.4558 0.6554 14 14 -0.1428 -7.8328 1.7632 15 1 -1.2900 -8.4509 1.0510 16 1 1.1235 -8.4420 1.2831 17 1 -0.2820 -8.0661 3.2232 18 6 1.0122 -3.0356 0.6512 19 6 2.0323 -0.7104 -1.2305 20 6 2.9344 -1.7506 -1.1078 21 6 3.3911 -2.4063 -2.2356 22 6 2.9540 -2.0139 -3.4882 23 17 3.5329 -2.8318 -4.9057 24 6 2.0554 -0.9689 -3.6107 25 6 1.5954 -0.3176 -2.4818 26 1 -0.3634 0.5586 0.8626 27 1 -0.3634 0.4678 -0.9150 28 1 -0.3634 -1.0263 0.0524 29 1 3.1268 1.4436 -0.0825 30 1 1.6108 1.9796 -0.8458 31 1 1.7456 1.9319 0.9284 32 1 1.7993 -2.5298 3.5297 33 1 2.8703 -3.5258 2.4504 34 1 -1.3092 -3.6657 2.1812 35 1 -1.0592 -4.4944 0.5288 36 1 1.6671 -3.6221 0.0068 37 1 0.1265 -2.6648 0.1353 38 1 3.2787 -2.0542 -0.1303 39 1 4.0926 -3.2218 -2.1394 40 1 1.7135 -0.6624 -4.5882 41 1 0.8943 0.4984 -2.5774 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186840607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:03 Heat of formation + Delta-G solvation = -32.095944 kcal Electronic energy + Delta-G solvation = -26216.934528 eV Core-core repulsion = 22509.898468 eV Total energy + Delta-G solvation = -3707.036059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78394 -39.02800 -37.82875 -36.56412 -34.82988 -34.38495 -32.41004 -31.19934 -29.62693 -28.77667 -27.15272 -25.54473 -25.21902 -23.54030 -22.71718 -21.48638 -19.85287 -18.40907 -18.07988 -17.32451 -16.37429 -15.93136 -15.40175 -15.19032 -14.74431 -14.63589 -14.19260 -13.97259 -13.81322 -13.67137 -13.33228 -12.89437 -12.77747 -12.64567 -12.58394 -12.23915 -12.11972 -11.98387 -11.71306 -11.50304 -11.40786 -11.15455 -10.99481 -10.90676 -10.89064 -10.78864 -10.54402 -10.24529 -9.46688 -9.36201 -9.03444 -8.88156 -8.61062 -8.38606 -7.93435 -6.73244 -4.50443 1.07714 1.25433 2.08424 2.97570 3.28072 3.31062 3.35328 3.50215 3.56331 4.28181 4.50214 4.56823 4.78011 4.82818 4.87845 5.05758 5.08886 5.25810 5.30483 5.37271 5.57760 5.63517 5.65657 5.76769 5.80522 5.85597 5.88751 6.00749 6.01513 6.15724 6.19665 6.23708 6.25220 6.31754 6.42116 6.47564 6.54436 6.72885 6.74151 7.60906 8.06570 8.26409 8.42200 8.56632 8.77725 9.20109 10.59907 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.005348 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.649342 B = 5234.159898 C = 7078.852786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.038 4.038 3 C -0.121 4.121 4 C 0.540 3.460 5 O -0.556 6.556 6 N -0.630 5.630 7 C 0.121 3.879 8 C 0.216 3.784 9 O -0.566 6.566 10 C -0.619 4.619 11 H 0.065 0.935 12 C 0.035 3.965 13 N -0.893 5.893 14 Si 1.069 2.931 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.074 3.926 19 C -0.062 4.062 20 C -0.100 4.100 21 C -0.103 4.103 22 C -0.035 4.035 23 Cl -0.077 7.077 24 C -0.110 4.110 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.373 0.627 35 H 0.266 0.734 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 8.196 -8.690 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.179 4.179 4 C 0.329 3.671 5 O -0.436 6.436 6 N -0.364 5.364 7 C -0.001 4.001 8 C 0.175 3.825 9 O -0.373 6.373 10 C -0.657 4.657 11 H 0.083 0.917 12 C -0.171 4.171 13 N -0.529 5.529 14 Si 0.896 3.104 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.048 4.048 19 C -0.062 4.062 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.062 4.062 23 Cl -0.048 7.048 24 C -0.129 4.129 25 C -0.117 4.117 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.222 0.778 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.074 7.592 -8.410 12.040 hybrid contribution 0.534 0.949 -0.221 1.112 sum 4.608 8.542 -8.631 12.988 Atomic orbital electron populations 1.21983 0.91514 1.03904 1.02521 1.19743 0.97610 0.96168 0.90539 1.21660 1.01637 0.92274 1.02285 1.19897 0.79448 0.80934 0.86835 1.90644 1.39216 1.66165 1.47555 1.50234 1.56016 1.07984 1.22143 1.23313 0.98657 0.86891 0.91236 1.20156 0.82376 0.92688 0.87284 1.86263 1.16240 1.72970 1.61863 1.22202 1.08753 0.89889 1.44862 0.91700 1.25969 0.92495 1.07271 0.91350 1.70992 1.36695 1.13728 1.31528 0.83525 0.76559 0.73723 0.76599 1.20561 1.21140 1.20987 1.24575 0.95178 0.86029 0.99030 1.19652 0.96721 0.95928 0.93947 1.21352 0.96440 0.94943 0.99082 1.21041 1.00457 1.00261 0.90370 1.20914 1.00204 0.97100 0.87936 1.98360 1.87964 1.78608 1.39841 1.20961 0.97100 0.95332 0.99478 1.20852 0.99896 1.00017 0.90891 0.91645 0.91506 0.90905 0.92014 0.91994 0.91339 0.91039 0.89402 0.77776 0.92167 0.89443 0.91480 0.84672 0.84827 0.84962 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.18 37.16 0.30 -1.66 16 2 C -0.04 -0.56 0.62 -156.81 -0.10 -0.66 16 3 C -0.12 -1.59 7.64 37.16 0.28 -1.31 16 4 C 0.54 10.25 5.42 -10.99 -0.06 10.20 16 5 O -0.56 -12.13 16.65 5.56 0.09 -12.03 16 6 N -0.63 -12.34 2.52 -178.31 -0.45 -12.79 16 7 C 0.12 2.52 8.23 -2.98 -0.02 2.50 16 8 C 0.22 4.88 1.08 -90.85 -0.10 4.79 16 9 O -0.57 -13.34 13.46 -35.23 -0.47 -13.81 16 10 C -0.62 -15.27 8.56 -34.44 -0.29 -15.56 16 11 H 0.06 1.60 7.86 -52.48 -0.41 1.18 16 12 C 0.04 0.88 5.23 -17.82 -0.09 0.79 16 13 N -0.89 -22.97 13.07 55.43 0.72 -22.25 16 14 Si 1.07 22.51 29.93 -169.99 -5.09 17.42 16 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.29 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 C 0.07 1.50 4.81 -2.97 -0.01 1.48 16 19 C -0.06 -0.88 4.30 -104.62 -0.45 -1.33 16 20 C -0.10 -1.53 6.83 -39.59 -0.27 -1.80 16 21 C -0.10 -1.44 9.83 -39.55 -0.39 -1.82 16 22 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 23 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 24 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 25 C -0.10 -1.18 8.82 -39.59 -0.35 -1.53 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.73 6.96 -51.93 -0.36 0.37 16 28 H 0.07 1.15 5.32 -51.93 -0.28 0.87 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.64 7.96 -51.93 -0.41 0.22 16 31 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 32 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 33 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 34 H 0.37 8.60 6.88 45.56 0.31 8.92 16 35 H 0.27 6.64 5.28 -40.82 -0.22 6.42 16 36 H 0.09 1.80 7.09 -51.93 -0.37 1.43 16 37 H 0.07 1.34 5.55 -51.93 -0.29 1.05 16 38 H 0.14 2.29 5.50 -52.49 -0.29 2.00 16 39 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.26 7.14 -52.48 -0.37 0.88 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -27.97 343.72 -8.13 -36.10 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.43 Total: 12.93 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.19 Total: -8.31 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.28 Total: -35.04 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.38 Total: -25.85 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.09 Total: 17.42 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.97 -8.13 -36.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186840607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.005 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds