Wall clock time and date at job start Tue Mar 31 2020 13:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47054 * 2 1 4 4 C 1.50697 * 109.47300 * 120.00438 * 2 1 3 5 5 O 1.21281 * 119.99653 * 238.31776 * 4 2 1 6 6 N 1.34779 * 120.00324 * 58.31739 * 4 2 1 7 7 C 1.47582 * 134.49204 * 185.27768 * 6 4 2 8 8 C 1.53950 * 86.11559 * 155.35515 * 7 6 4 9 9 O 1.42899 * 113.74344 * 269.15080 * 8 7 6 10 10 C 1.50704 * 113.74069 * 137.95160 * 8 7 6 11 11 H 1.08000 * 119.99522 * 6.14860 * 10 8 7 12 12 C 1.37875 * 119.99988 * 186.15599 * 10 8 7 13 13 N 1.31516 * 119.99714 * 184.74692 * 12 10 8 14 14 Si 1.86796 * 119.99867 * 4.74891 * 12 10 8 15 15 H 1.48500 * 109.47182 * 269.99783 * 14 12 10 16 16 H 1.48497 * 109.47298 * 30.00259 * 14 12 10 17 17 H 1.48499 * 109.47171 * 150.00272 * 14 12 10 18 18 C 1.47806 * 134.45504 * 5.13963 * 6 4 2 19 19 C 1.50707 * 109.46889 * 240.00036 * 2 1 3 20 20 C 1.38236 * 120.00566 * 238.67116 * 19 2 1 21 21 C 1.38219 * 120.01092 * 179.77101 * 20 19 2 22 22 C 1.38268 * 120.02573 * 0.50271 * 21 20 19 23 23 C 1.38194 * 120.01252 * 359.74839 * 22 21 20 24 24 C 1.38334 * 120.00409 * 58.94610 * 19 2 1 25 25 Cl 1.73597 * 120.01248 * 359.95198 * 24 19 2 26 26 H 1.09004 * 109.46882 * 304.72296 * 1 2 3 27 27 H 1.08993 * 109.47001 * 64.73054 * 1 2 3 28 28 H 1.09009 * 109.47052 * 184.73548 * 1 2 3 29 29 H 1.09007 * 109.47190 * 185.77453 * 3 2 1 30 30 H 1.09004 * 109.47403 * 305.77546 * 3 2 1 31 31 H 1.08996 * 109.47254 * 65.77675 * 3 2 1 32 32 H 1.08997 * 113.76865 * 41.05570 * 7 6 4 33 33 H 1.09004 * 113.76586 * 269.65676 * 7 6 4 34 34 H 0.96697 * 113.99866 * 172.98175 * 9 8 7 35 35 H 0.97000 * 120.00261 * 354.99264 * 13 12 10 36 36 H 1.09004 * 113.77033 * 90.38168 * 18 6 4 37 37 H 1.08997 * 113.84053 * 318.91860 * 18 6 4 38 38 H 1.08000 * 119.99248 * 359.97438 * 20 19 2 39 39 H 1.08002 * 119.99074 * 180.22920 * 21 20 19 40 40 H 1.07997 * 119.99137 * 179.76866 * 22 21 20 41 41 H 1.07998 * 120.00718 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7546 -0.1303 2.0131 6 7 1.6791 -1.9905 1.4609 7 6 1.8926 -2.9384 2.5718 8 6 0.6229 -3.6499 2.0701 9 8 -0.5804 -3.1769 2.6788 10 6 0.7296 -5.1532 2.0702 11 1 1.5991 -5.6327 2.4950 12 6 -0.2826 -5.9162 1.5280 13 7 -0.2341 -7.2278 1.6112 14 14 -1.7229 -5.0870 0.6751 15 1 -2.7953 -4.8156 1.6658 16 1 -1.2710 -3.8075 0.0717 17 1 -2.2474 -5.9786 -0.3903 18 6 0.9201 -3.0075 0.7030 19 6 2.0323 -0.7104 -1.2305 20 6 2.8496 -1.8182 -1.1041 21 6 3.3065 -2.4726 -2.2325 22 6 2.9549 -2.0137 -3.4885 23 6 2.1422 -0.9033 -3.6162 24 6 1.6803 -0.2507 -2.4869 25 17 0.6588 1.1438 -2.6464 26 1 -0.3633 0.5854 0.8447 27 1 -0.3633 0.4387 -0.9293 28 1 -0.3634 -1.0242 0.0848 29 1 3.1252 1.4442 -0.1034 30 1 1.5947 1.9853 -0.8338 31 1 1.7636 1.9255 0.9371 32 1 1.7836 -2.4897 3.5592 33 1 2.7992 -3.5352 2.4720 34 1 -1.3872 -3.5433 2.2918 35 1 0.5472 -7.6613 1.9887 36 1 1.5404 -3.6247 0.0531 37 1 0.0362 -2.6140 0.2011 38 1 3.1284 -2.1742 -0.1233 39 1 3.9419 -3.3403 -2.1332 40 1 3.3153 -2.5233 -4.3699 41 1 1.8680 -0.5446 -4.5973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186847270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:06 Heat of formation + Delta-G solvation = -9.109397 kcal Electronic energy + Delta-G solvation = -26645.936773 eV Core-core repulsion = 22939.897486 eV Total energy + Delta-G solvation = -3706.039288 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85005 -39.11346 -37.81981 -36.66759 -35.00262 -34.43117 -32.65099 -30.94580 -29.89222 -28.95781 -27.18898 -25.77089 -25.17124 -23.44380 -22.77472 -21.48462 -19.77015 -18.40301 -18.14039 -17.45037 -16.39172 -16.19724 -15.62373 -15.36087 -15.20084 -14.67231 -14.33708 -14.06243 -13.95189 -13.51507 -13.45343 -13.14977 -13.05957 -12.67788 -12.57122 -12.28526 -12.18770 -12.08889 -11.96937 -11.55503 -11.40863 -11.08626 -10.97089 -10.92420 -10.72235 -10.39207 -10.32905 -9.92222 -9.52020 -9.33547 -9.02242 -8.96489 -8.74524 -8.54657 -8.06651 -6.74223 -4.51006 1.04639 1.16802 1.98231 2.95918 3.06741 3.09897 3.27351 3.31487 3.52643 4.13932 4.48051 4.49014 4.71067 4.80238 4.96740 5.06104 5.10386 5.19020 5.19438 5.31505 5.51704 5.57092 5.73063 5.76605 5.77981 5.88561 5.92041 5.99431 6.04297 6.13168 6.17507 6.23237 6.26897 6.30852 6.39108 6.40151 6.51480 6.58593 6.69479 7.46206 8.03369 8.21385 8.45390 8.52885 8.57520 9.24591 10.61513 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.005414 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.497177 B = 5170.444030 C = 5659.923394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.034 4.034 3 C -0.133 4.133 4 C 0.543 3.457 5 O -0.552 6.552 6 N -0.632 5.632 7 C 0.126 3.874 8 C 0.197 3.803 9 O -0.555 6.555 10 C -0.609 4.609 11 H 0.071 0.929 12 C 0.036 3.964 13 N -0.891 5.891 14 Si 1.026 2.974 15 H -0.275 1.275 16 H -0.265 1.265 17 H -0.279 1.279 18 C 0.058 3.942 19 C -0.057 4.057 20 C -0.106 4.106 21 C -0.106 4.106 22 C -0.111 4.111 23 C -0.110 4.110 24 C -0.028 4.028 25 Cl -0.062 7.062 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.355 0.645 35 H 0.274 0.726 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 12.030 -11.615 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.038 4.038 3 C -0.191 4.191 4 C 0.332 3.668 5 O -0.431 6.431 6 N -0.366 5.366 7 C 0.004 3.996 8 C 0.156 3.844 9 O -0.364 6.364 10 C -0.647 4.647 11 H 0.089 0.911 12 C -0.171 4.171 13 N -0.524 5.524 14 Si 0.854 3.146 15 H -0.202 1.202 16 H -0.191 1.191 17 H -0.205 1.205 18 C -0.064 4.064 19 C -0.058 4.058 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.054 4.054 25 Cl -0.033 7.033 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.205 0.795 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.048 12.681 -11.614 17.318 hybrid contribution 1.034 -0.117 0.370 1.105 sum 3.082 12.565 -11.245 17.141 Atomic orbital electron populations 1.22325 0.91566 1.03942 1.04027 1.19714 0.97785 0.96223 0.90030 1.21882 1.01524 0.92494 1.03160 1.19876 0.79610 0.80716 0.86632 1.90646 1.37576 1.66144 1.48747 1.50271 1.54228 1.09389 1.22715 1.23252 0.98157 0.87123 0.91048 1.20523 0.82993 0.93350 0.87527 1.86445 1.15395 1.71795 1.62795 1.22259 1.09293 0.89047 1.44147 0.91052 1.25768 1.00730 0.95719 0.94931 1.70765 1.30686 1.08955 1.41973 0.84388 0.76203 0.76164 0.77815 1.20219 1.19124 1.20502 1.24979 0.94880 0.87095 0.99424 1.19446 0.97846 0.96062 0.92465 1.21498 0.96306 0.94229 1.00393 1.21295 0.99338 0.99685 0.92132 1.21118 0.97899 0.96019 0.97888 1.20988 0.98452 0.96123 0.97323 1.20629 0.98624 0.92002 0.94191 1.98309 1.66704 1.41022 1.97225 0.91607 0.90064 0.91164 0.92230 0.90829 0.91441 0.90760 0.89217 0.79500 0.91570 0.88925 0.90424 0.84274 0.85082 0.85042 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.16 37.16 0.30 -2.10 16 2 C -0.03 -0.54 0.51 -156.81 -0.08 -0.62 16 3 C -0.13 -1.91 7.51 37.15 0.28 -1.63 16 4 C 0.54 10.35 5.49 -10.99 -0.06 10.29 16 5 O -0.55 -12.05 16.65 5.56 0.09 -11.96 16 6 N -0.63 -12.22 2.45 -178.10 -0.44 -12.66 16 7 C 0.13 2.58 8.23 -2.96 -0.02 2.56 16 8 C 0.20 4.35 1.06 -90.84 -0.10 4.26 16 9 O -0.56 -12.58 13.43 -35.23 -0.47 -13.05 16 10 C -0.61 -15.34 9.04 -34.44 -0.31 -15.65 16 11 H 0.07 1.92 8.04 -52.49 -0.42 1.50 16 12 C 0.04 0.94 5.47 -17.82 -0.10 0.84 16 13 N -0.89 -24.91 13.70 55.43 0.76 -24.15 16 14 Si 1.03 21.70 24.83 -169.99 -4.22 17.48 16 15 H -0.28 -5.54 6.95 56.52 0.39 -5.15 16 16 H -0.27 -4.98 4.67 56.52 0.26 -4.72 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 C 0.06 1.13 4.33 -2.84 -0.01 1.12 16 19 C -0.06 -0.83 4.44 -104.58 -0.46 -1.30 16 20 C -0.11 -1.56 6.94 -39.59 -0.27 -1.83 16 21 C -0.11 -1.30 10.05 -39.58 -0.40 -1.70 16 22 C -0.11 -1.17 10.05 -39.59 -0.40 -1.57 16 23 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 24 C -0.03 -0.36 6.03 -39.50 -0.24 -0.59 16 25 Cl -0.06 -0.70 22.53 -51.86 -1.17 -1.87 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.06 4.75 -51.93 -0.25 0.82 16 28 H 0.07 1.13 5.02 -51.92 -0.26 0.87 16 29 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.07 0.91 5.19 -51.93 -0.27 0.64 16 31 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 34 H 0.36 7.48 4.48 45.56 0.20 7.68 16 35 H 0.27 7.62 8.72 -40.82 -0.36 7.27 16 36 H 0.09 1.75 7.01 -51.93 -0.36 1.38 16 37 H 0.08 1.46 3.96 -51.93 -0.21 1.26 16 38 H 0.14 2.28 5.13 -52.49 -0.27 2.01 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -29.31 326.41 -7.29 -36.60 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.50 Total: 14.20 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.26 Total: -9.51 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.32 Total: -36.81 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.38 Total: -25.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.22 Total: 17.48 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.17 Total: -1.87 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.31 -7.29 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186847270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.491 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds