Wall clock time and date at job start Tue Mar 31 2020 13:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47054 * 2 1 4 4 C 1.50697 * 109.47300 * 120.00438 * 2 1 3 5 5 O 1.21281 * 119.99653 * 238.31776 * 4 2 1 6 6 N 1.34779 * 120.00324 * 58.31739 * 4 2 1 7 7 C 1.47582 * 134.49204 * 185.27768 * 6 4 2 8 8 C 1.53950 * 86.11559 * 155.35515 * 7 6 4 9 9 O 1.42899 * 113.74344 * 269.15080 * 8 7 6 10 10 C 1.50704 * 113.74069 * 137.95160 * 8 7 6 11 11 H 1.08000 * 119.99522 * 6.14860 * 10 8 7 12 12 C 1.37875 * 119.99988 * 186.15599 * 10 8 7 13 13 N 1.31516 * 119.99714 * 184.74692 * 12 10 8 14 14 Si 1.86796 * 119.99867 * 4.74891 * 12 10 8 15 15 H 1.48500 * 109.47182 * 269.99783 * 14 12 10 16 16 H 1.48497 * 109.47298 * 30.00259 * 14 12 10 17 17 H 1.48499 * 109.47171 * 150.00272 * 14 12 10 18 18 C 1.47806 * 134.45504 * 5.13963 * 6 4 2 19 19 C 1.50707 * 109.46889 * 240.00036 * 2 1 3 20 20 C 1.38236 * 120.00566 * 238.67116 * 19 2 1 21 21 C 1.38219 * 120.01092 * 179.77101 * 20 19 2 22 22 C 1.38268 * 120.02573 * 0.50271 * 21 20 19 23 23 C 1.38194 * 120.01252 * 359.74839 * 22 21 20 24 24 C 1.38334 * 120.00409 * 58.94610 * 19 2 1 25 25 Cl 1.73597 * 120.01248 * 359.95198 * 24 19 2 26 26 H 1.09004 * 109.46882 * 304.72296 * 1 2 3 27 27 H 1.08993 * 109.47001 * 64.73054 * 1 2 3 28 28 H 1.09009 * 109.47052 * 184.73548 * 1 2 3 29 29 H 1.09007 * 109.47190 * 185.77453 * 3 2 1 30 30 H 1.09004 * 109.47403 * 305.77546 * 3 2 1 31 31 H 1.08996 * 109.47254 * 65.77675 * 3 2 1 32 32 H 1.08997 * 113.76865 * 41.05570 * 7 6 4 33 33 H 1.09004 * 113.76586 * 269.65676 * 7 6 4 34 34 H 0.96697 * 113.99866 * 172.98175 * 9 8 7 35 35 H 0.97000 * 120.00261 * 354.99264 * 13 12 10 36 36 H 1.09004 * 113.77033 * 90.38168 * 18 6 4 37 37 H 1.08997 * 113.84053 * 318.91860 * 18 6 4 38 38 H 1.08000 * 119.99248 * 359.97438 * 20 19 2 39 39 H 1.08002 * 119.99074 * 180.22920 * 21 20 19 40 40 H 1.07997 * 119.99137 * 179.76866 * 22 21 20 41 41 H 1.07998 * 120.00718 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7546 -0.1303 2.0131 6 7 1.6791 -1.9905 1.4609 7 6 1.8926 -2.9384 2.5718 8 6 0.6229 -3.6499 2.0701 9 8 -0.5804 -3.1769 2.6788 10 6 0.7296 -5.1532 2.0702 11 1 1.5991 -5.6327 2.4950 12 6 -0.2826 -5.9162 1.5280 13 7 -0.2341 -7.2278 1.6112 14 14 -1.7229 -5.0870 0.6751 15 1 -2.7953 -4.8156 1.6658 16 1 -1.2710 -3.8075 0.0717 17 1 -2.2474 -5.9786 -0.3903 18 6 0.9201 -3.0075 0.7030 19 6 2.0323 -0.7104 -1.2305 20 6 2.8496 -1.8182 -1.1041 21 6 3.3065 -2.4726 -2.2325 22 6 2.9549 -2.0137 -3.4885 23 6 2.1422 -0.9033 -3.6162 24 6 1.6803 -0.2507 -2.4869 25 17 0.6588 1.1438 -2.6464 26 1 -0.3633 0.5854 0.8447 27 1 -0.3633 0.4387 -0.9293 28 1 -0.3634 -1.0242 0.0848 29 1 3.1252 1.4442 -0.1034 30 1 1.5947 1.9853 -0.8338 31 1 1.7636 1.9255 0.9371 32 1 1.7836 -2.4897 3.5592 33 1 2.7992 -3.5352 2.4720 34 1 -1.3872 -3.5433 2.2918 35 1 0.5472 -7.6613 1.9887 36 1 1.5404 -3.6247 0.0531 37 1 0.0362 -2.6140 0.2011 38 1 3.1284 -2.1742 -0.1233 39 1 3.9419 -3.3403 -2.1332 40 1 3.3153 -2.5233 -4.3699 41 1 1.8680 -0.5446 -4.5973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186847270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:05 Heat of formation + Delta-G solvation = -28.066478 kcal Electronic energy + Delta-G solvation = -26646.758814 eV Core-core repulsion = 22939.897486 eV Total energy + Delta-G solvation = -3706.861328 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.21361 -40.41025 -39.32656 -37.57890 -36.27139 -36.13446 -34.65239 -31.90363 -30.86737 -30.59883 -28.44551 -27.36544 -26.94802 -24.64671 -23.76121 -22.74517 -21.40313 -20.06792 -19.79235 -18.71243 -17.83725 -17.63203 -17.07704 -16.69170 -16.47557 -15.94780 -15.67809 -15.27888 -15.14889 -14.97295 -14.62116 -14.47555 -14.33651 -14.30675 -14.18374 -13.77689 -13.59720 -13.33592 -13.17225 -13.00170 -12.56613 -12.36296 -12.21324 -12.09318 -11.99661 -11.98578 -11.69982 -11.45812 -11.23419 -10.99676 -10.78564 -10.35405 -9.91127 -9.73236 -9.65148 -8.81186 -6.59697 0.11719 0.23240 1.05977 1.37354 1.43840 1.47902 1.59745 1.77610 2.38336 2.60033 2.84061 3.13197 3.37412 3.40834 3.75764 3.86185 3.90582 3.92612 4.10026 4.29189 4.31294 4.35313 4.37945 4.53373 4.54698 4.61898 4.63142 4.70800 4.77201 4.79589 4.85227 4.88327 4.96038 5.13071 5.21181 5.24907 5.34034 5.45448 5.55797 5.79691 5.90629 6.38708 6.65421 6.76159 6.99926 7.25395 8.53489 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.005414 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.497177 B = 5170.444030 C = 5659.923394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 C -0.128 4.128 4 C 0.540 3.460 5 O -0.586 6.586 6 N -0.628 5.628 7 C 0.121 3.879 8 C 0.189 3.811 9 O -0.562 6.562 10 C -0.611 4.611 11 H 0.038 0.962 12 C -0.008 4.008 13 N -0.924 5.924 14 Si 1.057 2.943 15 H -0.257 1.257 16 H -0.229 1.229 17 H -0.282 1.282 18 C 0.079 3.921 19 C -0.074 4.074 20 C -0.130 4.130 21 C -0.112 4.112 22 C -0.101 4.101 23 C -0.103 4.103 24 C -0.034 4.034 25 Cl -0.051 7.051 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 13.835 -14.669 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.033 4.033 3 C -0.185 4.185 4 C 0.331 3.669 5 O -0.467 6.467 6 N -0.361 5.361 7 C -0.001 4.001 8 C 0.148 3.852 9 O -0.372 6.372 10 C -0.649 4.649 11 H 0.056 0.944 12 C -0.209 4.209 13 N -0.558 5.558 14 Si 0.878 3.122 15 H -0.182 1.182 16 H -0.152 1.152 17 H -0.208 1.208 18 C -0.043 4.043 19 C -0.076 4.076 20 C -0.148 4.148 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.061 4.061 25 Cl -0.022 7.022 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.214 0.786 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.184 0.816 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.060 14.499 -14.661 20.646 hybrid contribution 1.460 -0.699 1.358 2.113 sum 2.520 13.799 -13.303 19.332 Atomic orbital electron populations 1.22342 0.90747 1.03361 1.05148 1.19713 0.98345 0.96415 0.88859 1.21870 1.01100 0.91953 1.03604 1.20575 0.78798 0.80187 0.87299 1.90622 1.39095 1.66707 1.50239 1.50179 1.54260 1.09591 1.22047 1.23212 0.97895 0.87647 0.91346 1.20509 0.83436 0.91604 0.89665 1.86427 1.15786 1.71615 1.63393 1.22350 1.08156 0.91074 1.43337 0.94360 1.27165 1.03452 0.95360 0.94928 1.70901 1.30528 1.10316 1.44092 0.84067 0.73856 0.76841 0.77481 1.18218 1.15246 1.20800 1.24719 0.95315 0.86601 0.97665 1.19347 0.99033 0.96554 0.92622 1.21384 0.97891 0.95386 1.00173 1.21513 0.99304 0.99917 0.92243 1.21514 0.96630 0.95536 0.98186 1.21381 0.97300 0.95518 0.97962 1.20720 0.98933 0.92501 0.93940 1.98309 1.66347 1.40465 1.97068 0.91620 0.88059 0.92270 0.93078 0.88685 0.92253 0.91476 0.88737 0.78630 0.93182 0.88462 0.89035 0.86857 0.83904 0.81641 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 8.16 71.98 0.59 -3.77 16 2 C -0.03 -0.91 0.51 -53.67 -0.03 -0.94 16 3 C -0.13 -3.50 7.51 71.98 0.54 -2.96 16 4 C 0.54 20.54 5.49 87.66 0.48 21.02 16 5 O -0.59 -25.90 16.65 -3.03 -0.05 -25.95 16 6 N -0.63 -24.15 2.45 -839.61 -2.06 -26.21 16 7 C 0.12 5.07 8.23 86.49 0.71 5.78 16 8 C 0.19 8.30 1.06 -10.88 -0.01 8.29 16 9 O -0.56 -24.83 13.43 -148.98 -2.00 -26.83 16 10 C -0.61 -31.42 9.04 25.60 0.23 -31.19 16 11 H 0.04 2.16 8.04 -2.91 -0.02 2.14 16 12 C -0.01 -0.43 5.47 84.65 0.46 0.03 16 13 N -0.92 -52.94 13.70 21.45 0.29 -52.64 16 14 Si 1.06 42.14 24.83 68.60 1.70 43.84 16 15 H -0.26 -9.48 6.95 99.48 0.69 -8.79 16 16 H -0.23 -7.66 4.67 99.48 0.46 -7.19 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 18 C 0.08 2.96 4.33 86.44 0.37 3.34 16 19 C -0.07 -2.03 4.44 -19.84 -0.09 -2.12 16 20 C -0.13 -3.66 6.94 22.26 0.15 -3.51 16 21 C -0.11 -2.47 10.05 22.27 0.22 -2.24 16 22 C -0.10 -1.71 10.05 22.27 0.22 -1.48 16 23 C -0.10 -1.81 9.83 22.29 0.22 -1.59 16 24 C -0.03 -0.76 6.03 22.32 0.13 -0.63 16 25 Cl -0.05 -0.99 22.53 -2.72 -0.06 -1.05 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 2.34 4.75 -2.39 -0.01 2.33 16 28 H 0.06 1.75 5.02 -2.38 -0.01 1.74 16 29 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.09 2.14 5.19 -2.38 -0.01 2.13 16 31 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.09 3.79 8.09 -2.39 -0.02 3.77 16 34 H 0.36 14.52 4.48 -74.06 -0.33 14.19 16 35 H 0.26 15.09 8.72 -92.71 -0.81 14.28 16 36 H 0.10 3.58 7.01 -2.39 -0.02 3.57 16 37 H 0.09 3.20 3.96 -2.39 -0.01 3.19 16 38 H 0.11 3.74 5.13 -2.91 -0.01 3.73 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -65.05 326.41 2.50 -62.55 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: 0.46 Total: 38.28 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.22 Total: -11.98 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.77 Total: -78.86 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -2.05 Total: -52.78 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.70 Total: 43.84 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.06 Total: -1.05 kcal Total: -65.05 2.50 -62.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186847270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.480 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds