Wall clock time and date at job start Tue Mar 31 2020 13:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47567 * 2 1 4 4 C 1.50701 * 109.46867 * 120.00195 * 2 1 3 5 5 O 1.21287 * 119.99946 * 242.20641 * 4 2 1 6 6 N 1.34773 * 119.99953 * 62.20749 * 4 2 1 7 7 C 1.47584 * 134.49074 * 175.45126 * 6 4 2 8 8 C 1.53944 * 86.11640 * 155.35734 * 7 6 4 9 9 O 1.42897 * 113.74308 * 269.15198 * 8 7 6 10 10 C 1.50702 * 113.74210 * 137.95198 * 8 7 6 11 11 H 1.07998 * 120.00290 * 359.97438 * 10 8 7 12 12 C 1.37880 * 119.99853 * 179.97438 * 10 8 7 13 13 N 1.31515 * 119.99875 * 179.97438 * 12 10 8 14 14 Si 1.86794 * 120.00063 * 0.02562 * 12 10 8 15 15 H 1.48508 * 109.47115 * 269.99845 * 14 12 10 16 16 H 1.48496 * 109.47366 * 29.99790 * 14 12 10 17 17 H 1.48503 * 109.47399 * 150.00143 * 14 12 10 18 18 C 1.47577 * 134.49453 * 355.44932 * 6 4 2 19 19 C 1.50698 * 109.47115 * 240.00006 * 2 1 3 20 20 C 1.38267 * 119.99363 * 52.91149 * 19 2 1 21 21 C 1.38218 * 120.02920 * 180.02562 * 20 19 2 22 22 C 1.38237 * 120.01124 * 359.97438 * 21 20 19 23 23 C 1.38333 * 119.98670 * 0.02562 * 22 21 20 24 24 Cl 1.73605 * 120.01172 * 180.02562 * 23 22 21 25 25 C 1.38191 * 119.99626 * 232.63449 * 19 2 1 26 26 H 1.09002 * 109.47107 * 292.33184 * 1 2 3 27 27 H 1.08999 * 109.46977 * 52.32340 * 1 2 3 28 28 H 1.08995 * 109.47224 * 172.32168 * 1 2 3 29 29 H 1.08994 * 109.47053 * 182.76746 * 3 2 1 30 30 H 1.09000 * 109.46893 * 302.76978 * 3 2 1 31 31 H 1.09008 * 109.46406 * 62.76229 * 3 2 1 32 32 H 1.09000 * 113.77229 * 41.05551 * 7 6 4 33 33 H 1.09006 * 113.76602 * 269.65498 * 7 6 4 34 34 H 0.96695 * 114.00606 * 178.07833 * 9 8 7 35 35 H 0.96998 * 120.00006 * 180.02562 * 13 12 10 36 36 H 1.08994 * 113.77517 * 90.33477 * 18 6 4 37 37 H 1.09005 * 113.76718 * 318.93606 * 18 6 4 38 38 H 1.08002 * 119.98292 * 359.97426 * 20 19 2 39 39 H 1.07999 * 119.99738 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00997 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00176 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.6962 -0.1100 2.0489 6 7 1.7438 -2.0130 1.4214 7 6 2.1256 -3.0197 2.4308 8 6 0.8182 -3.7401 2.0544 9 8 -0.3047 -3.3448 2.8448 10 6 0.9604 -5.2363 1.9427 11 1 1.9179 -5.7026 2.1216 12 6 -0.1321 -6.0098 1.6121 13 7 -0.0080 -7.3154 1.5142 14 14 -1.7881 -5.2031 1.3020 15 1 -2.5450 -5.1204 2.5771 16 1 -1.5793 -3.8362 0.7608 17 1 -2.5568 -6.0116 0.3218 18 6 0.9191 -3.0055 0.7053 19 6 2.0323 -0.7104 -1.2304 20 6 1.5819 -0.3293 -2.4809 21 6 2.0417 -0.9807 -3.6099 22 6 2.9528 -2.0134 -3.4895 23 6 3.4038 -2.3951 -2.2387 24 17 4.5485 -3.6915 -2.0868 25 6 2.9474 -1.7388 -1.1093 26 1 -0.3633 0.3905 0.9506 27 1 -0.3633 0.6281 -0.8134 28 1 -0.3633 -1.0184 -0.1373 29 1 3.1289 1.4428 -0.0496 30 1 1.6368 1.9705 -0.8641 31 1 1.7178 1.9418 0.9138 32 1 2.1379 -2.6362 3.4511 33 1 3.0252 -3.5795 2.1745 34 1 -1.1339 -3.7733 2.5923 35 1 -0.7764 -7.8595 1.2812 36 1 1.4641 -3.5610 -0.0578 37 1 -0.0320 -2.6107 0.3480 38 1 0.8698 0.4772 -2.5754 39 1 1.6892 -0.6829 -4.5863 40 1 3.3117 -2.5226 -4.3716 41 1 3.3023 -2.0337 -0.1328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186848114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:09 Heat of formation + Delta-G solvation = -13.017405 kcal Electronic energy + Delta-G solvation = -26454.495725 eV Core-core repulsion = 22748.286973 eV Total energy + Delta-G solvation = -3706.208752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80782 -39.07595 -37.87090 -36.45749 -34.92286 -34.54343 -32.55414 -30.97595 -29.84396 -29.02711 -27.29011 -25.83006 -25.41941 -23.62224 -22.74345 -21.43143 -19.83269 -18.42374 -17.77274 -17.19565 -16.46756 -16.29473 -15.73681 -15.42011 -15.06949 -14.63806 -14.28174 -13.91838 -13.72789 -13.66822 -13.42054 -12.97099 -12.90454 -12.79252 -12.39566 -12.29491 -12.22102 -12.13449 -11.89566 -11.60799 -11.46352 -11.27342 -11.15315 -11.01884 -10.82260 -10.65455 -10.62021 -10.15128 -9.69824 -9.31515 -9.01739 -8.95084 -8.71071 -8.65574 -8.04881 -6.42965 -4.48526 1.08876 1.19896 2.17997 2.94389 2.97082 2.98069 3.12137 3.31339 3.53906 4.01078 4.44399 4.48642 4.65552 4.82731 4.94445 5.00397 5.02636 5.12372 5.13698 5.34547 5.52782 5.55900 5.58681 5.70201 5.71804 5.79997 5.84272 5.96937 6.03040 6.14992 6.19425 6.19908 6.24952 6.29044 6.34793 6.39417 6.48970 6.58356 6.70425 7.18778 8.00992 8.22818 8.47382 8.54589 8.61567 9.14578 10.69335 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.006032 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.161956 B = 4640.553858 C = 5610.393265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 C -0.121 4.121 4 C 0.540 3.460 5 O -0.552 6.552 6 N -0.630 5.630 7 C 0.125 3.875 8 C 0.196 3.804 9 O -0.552 6.552 10 C -0.535 4.535 11 H 0.092 0.908 12 C 0.081 3.919 13 N -0.875 5.875 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.258 1.258 17 H -0.283 1.283 18 C 0.064 3.936 19 C -0.057 4.057 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.028 4.028 24 Cl -0.065 7.065 25 C -0.104 4.104 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.351 0.649 35 H 0.271 0.729 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 12.331 -11.052 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 C -0.178 4.178 4 C 0.329 3.671 5 O -0.431 6.431 6 N -0.363 5.363 7 C 0.003 3.997 8 C 0.155 3.845 9 O -0.363 6.363 10 C -0.572 4.572 11 H 0.110 0.890 12 C -0.124 4.124 13 N -0.510 5.510 14 Si 0.685 3.315 15 H -0.193 1.193 16 H -0.183 1.183 17 H -0.210 1.210 18 C -0.059 4.059 19 C -0.058 4.058 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.054 4.054 24 Cl -0.036 7.036 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.203 0.797 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.364 12.898 -10.378 16.723 hybrid contribution -1.290 -0.338 -0.575 1.452 sum 1.074 12.560 -10.953 16.700 Atomic orbital electron populations 1.21986 0.91704 1.03473 1.02832 1.19746 0.97512 0.96284 0.90522 1.21658 1.01782 0.92128 1.02233 1.19856 0.79603 0.80852 0.86780 1.90656 1.40860 1.65531 1.46042 1.50141 1.48789 1.07333 1.30082 1.23325 0.97999 0.85442 0.92936 1.20543 0.84237 0.93495 0.86186 1.86477 1.18494 1.70374 1.60990 1.21219 0.99026 0.87989 1.48991 0.89023 1.24987 0.98653 0.94835 0.93937 1.69851 1.31303 1.04131 1.45733 0.87371 0.85070 0.79939 0.79077 1.19301 1.18327 1.20988 1.24747 0.93932 0.87249 0.99941 1.19497 0.96459 0.95665 0.94139 1.20995 0.99979 1.00145 0.91431 1.21030 0.97063 0.95740 0.98770 1.21053 0.98263 0.98058 0.95930 1.20908 0.96284 0.93371 0.94872 1.98389 1.58811 1.48149 1.98280 1.21308 0.96948 0.95286 0.98713 0.91501 0.91421 0.91178 0.91920 0.91996 0.91289 0.90501 0.88740 0.79710 0.91914 0.88856 0.91131 0.85378 0.85103 0.85046 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.88 37.16 0.29 -1.57 16 2 C -0.04 -0.54 0.62 -156.81 -0.10 -0.64 16 3 C -0.12 -1.52 7.64 37.16 0.28 -1.23 16 4 C 0.54 10.04 5.44 -10.99 -0.06 9.98 16 5 O -0.55 -11.80 16.68 5.55 0.09 -11.70 16 6 N -0.63 -12.13 2.31 -178.32 -0.41 -12.54 16 7 C 0.12 2.55 8.23 -2.97 -0.02 2.52 16 8 C 0.20 4.38 1.06 -90.84 -0.10 4.29 16 9 O -0.55 -12.77 13.32 -35.23 -0.47 -13.24 16 10 C -0.53 -13.63 9.20 -34.44 -0.32 -13.94 16 11 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 13 N -0.87 -24.32 13.96 55.43 0.77 -23.54 16 14 Si 0.86 18.72 24.34 -169.99 -4.14 14.58 16 15 H -0.27 -5.70 7.06 56.52 0.40 -5.30 16 16 H -0.26 -5.22 5.28 56.52 0.30 -4.92 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 C 0.06 1.26 5.32 -2.98 -0.02 1.24 16 19 C -0.06 -0.78 4.30 -104.63 -0.45 -1.23 16 20 C -0.11 -1.18 8.88 -39.58 -0.35 -1.54 16 21 C -0.11 -1.10 10.05 -39.59 -0.40 -1.49 16 22 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 23 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 24 Cl -0.07 -0.93 28.96 -51.86 -1.50 -2.43 16 25 C -0.10 -1.58 6.84 -39.55 -0.27 -1.85 16 26 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 27 H 0.07 0.67 7.33 -51.93 -0.38 0.29 16 28 H 0.07 1.01 5.37 -51.93 -0.28 0.73 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.60 7.96 -51.93 -0.41 0.19 16 31 H 0.07 0.90 8.00 -51.92 -0.42 0.49 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 34 H 0.35 7.75 3.31 45.56 0.15 7.91 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.09 1.84 7.19 -51.93 -0.37 1.46 16 37 H 0.07 1.34 4.62 -51.93 -0.24 1.10 16 38 H 0.13 1.11 7.28 -52.49 -0.38 0.73 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.14 2.40 5.65 -52.49 -0.30 2.11 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -29.41 337.79 -7.63 -37.04 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -4.83 Total: 12.55 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.24 Total: -5.80 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.36 Total: -36.08 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.38 Total: -24.94 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.14 Total: 14.58 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.41 -7.63 -37.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186848114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.026 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds