Wall clock time and date at job start Tue Mar 31 2020 14:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 H 1.08998 * 109.47690 * 305.00511 * 3 2 1 5 5 C 1.50698 * 109.47457 * 185.00143 * 3 2 1 6 6 H 1.08002 * 120.00259 * 240.00652 * 5 3 2 7 7 C 1.37880 * 120.00016 * 59.99810 * 5 3 2 8 8 N 1.31515 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47415 * 90.00124 * 9 7 5 11 11 H 1.48500 * 109.47092 * 210.00594 * 9 7 5 12 12 H 1.48502 * 109.46907 * 329.99914 * 9 7 5 13 13 O 1.45206 * 109.46912 * 65.00160 * 3 2 1 14 14 C 1.34221 * 116.99859 * 270.00006 * 13 3 2 15 15 O 1.20834 * 120.00274 * 359.97438 * 14 13 3 16 16 C 1.50708 * 119.99918 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.39854 * 300.16685 * 16 14 13 18 18 C 1.53075 * 109.32992 * 180.38479 * 16 14 13 19 19 C 1.53344 * 108.42626 * 288.81450 * 18 16 14 20 20 C 1.52919 * 108.67264 * 292.47107 * 19 18 16 21 21 H 1.09002 * 109.30126 * 290.44160 * 20 19 18 22 22 C 1.53008 * 109.13202 * 170.95821 * 20 19 18 23 23 F 1.39900 * 109.46907 * 299.48422 * 22 20 19 24 24 F 1.39897 * 109.46665 * 59.48391 * 22 20 19 25 25 F 1.39898 * 109.46862 * 179.48213 * 22 20 19 26 26 N 1.45753 * 110.48895 * 50.75218 * 20 19 18 27 27 C 1.33351 * 124.10971 * 340.92872 * 26 20 19 28 28 O 1.21277 * 118.24852 * 182.19937 * 27 26 20 29 29 H 1.08996 * 109.47247 * 299.99526 * 1 2 3 30 30 H 1.09005 * 109.47223 * 59.99705 * 1 2 3 31 31 H 1.09004 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47110 * 240.00021 * 2 1 3 33 33 H 1.08994 * 109.47378 * 120.00755 * 2 1 3 34 34 H 0.96993 * 119.99684 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.67337 * 48.54899 * 18 16 14 36 36 H 1.08996 * 109.66772 * 169.04318 * 18 16 14 37 37 H 1.09000 * 109.60126 * 172.71428 * 19 18 16 38 38 H 1.09002 * 109.60004 * 52.22635 * 19 18 16 39 39 H 0.96999 * 117.94805 * 160.94192 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5539 -0.3519 -0.7600 11 1 6.3835 0.9216 -2.8166 12 1 6.5575 2.0720 -0.6890 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7253 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0070 3.4215 2.5089 17 1 -0.0687 2.6963 3.3192 18 6 -1.3663 4.0496 2.2588 19 6 -1.1872 5.2485 1.3197 20 6 -0.4105 6.3383 2.0596 21 1 -1.0391 6.7591 2.8443 22 6 -0.0294 7.4418 1.0706 23 9 0.7778 6.9054 0.0617 24 9 -1.1892 7.9803 0.5032 25 9 0.6717 8.4487 1.7429 26 7 0.7998 5.7867 2.6559 27 6 0.9958 4.4876 2.8842 28 8 2.0280 4.1490 3.4234 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 3.8292 -0.0610 -2.9499 35 1 -2.0265 3.3162 1.7958 36 1 -1.7945 4.3838 3.2038 37 1 -2.1643 5.6316 1.0253 38 1 -0.6309 4.9398 0.4346 39 1 1.5069 6.4033 2.9022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188077904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:14 Heat of formation + Delta-G solvation = -284.515543 kcal Electronic energy + Delta-G solvation = -29400.286430 eV Core-core repulsion = 24699.738731 eV Total energy + Delta-G solvation = -4700.547699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.37582 -47.91479 -47.78745 -41.05945 -39.25674 -37.05977 -35.89238 -33.59241 -33.32067 -31.39543 -30.87705 -27.73335 -26.88485 -23.94908 -23.21894 -22.96049 -21.72354 -19.94071 -19.19229 -18.80786 -18.57192 -18.40199 -17.49277 -16.77845 -16.71035 -16.24884 -15.55884 -15.28803 -14.81104 -14.71411 -14.60364 -14.36873 -14.28732 -14.16619 -13.96989 -13.93031 -13.79958 -13.40012 -12.95374 -12.79889 -12.61657 -12.16102 -11.71058 -11.61137 -11.51671 -11.33875 -11.27523 -11.14582 -10.95280 -10.64786 -10.27498 -10.04167 -9.82814 -9.68543 -9.57828 -9.38451 -8.82427 -8.45006 -6.17713 -4.23867 2.09803 2.43915 2.61650 2.90290 3.26915 3.31873 3.35155 3.39288 3.51238 3.67455 3.88255 4.25386 4.32053 4.33860 4.38236 4.59229 4.75582 5.14361 5.19653 5.32184 5.40380 5.63276 5.72975 5.90167 6.18451 6.24962 6.38615 6.41010 6.81279 6.84263 6.90234 7.12593 7.19056 7.61039 7.71277 7.89521 7.94271 8.14765 8.53766 8.87957 9.41188 10.89175 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.004354 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.455935 B = 6429.643420 C = 7096.521963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.339 6.339 14 C 0.465 3.535 15 O -0.503 6.503 16 C -0.106 4.106 17 H 0.141 0.859 18 C -0.101 4.101 19 C -0.145 4.145 20 C 0.105 3.895 21 H 0.121 0.879 22 C 0.440 3.560 23 F -0.169 7.169 24 F -0.175 7.175 25 F -0.182 7.182 26 N -0.715 5.715 27 C 0.539 3.461 28 O -0.504 6.504 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 12.010 9.126 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.557 4.557 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.254 6.254 14 C 0.306 3.694 15 O -0.393 6.393 16 C -0.128 4.128 17 H 0.159 0.841 18 C -0.139 4.139 19 C -0.183 4.183 20 C -0.003 4.003 21 H 0.139 0.861 22 C 0.385 3.615 23 F -0.150 7.150 24 F -0.156 7.156 25 F -0.164 7.164 26 N -0.372 5.372 27 C 0.325 3.675 28 O -0.377 6.377 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.178 11.534 8.835 18.958 hybrid contribution 1.178 0.474 -0.381 1.326 sum -11.001 12.008 8.454 18.349 Atomic orbital electron populations 1.21858 0.98370 0.99098 1.00601 1.22036 0.92634 0.99281 1.03554 1.20754 0.95243 0.88784 0.78311 0.93476 1.21059 0.89641 1.38797 1.06238 0.91224 1.24865 0.99243 0.94744 0.95001 1.69881 1.35361 1.37989 1.09516 0.86288 0.83938 0.78781 0.77276 1.20295 1.20976 1.19592 1.86581 1.33053 1.61598 1.44138 1.22351 0.81607 0.77470 0.87996 1.90620 1.55421 1.58634 1.34653 1.21242 0.95343 0.97348 0.98898 0.84102 1.21540 0.94654 0.97512 1.00174 1.22152 1.01964 0.93937 1.00226 1.22215 0.89058 0.93882 0.95185 0.86098 1.20912 0.75247 0.83171 0.82184 1.93281 1.73813 1.85586 1.62304 1.93201 1.48953 1.87313 1.86164 1.93195 1.79769 1.63420 1.79969 1.45310 1.19367 1.08460 1.64037 1.19430 0.87394 0.82325 0.78397 1.90860 1.26612 1.79609 1.40604 0.95066 0.92766 0.94723 0.87209 0.93834 0.92413 0.88067 0.89602 0.87820 0.87843 0.75411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.88 2.25 -27.89 -0.06 5.81 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.85 8.90 -34.44 -0.31 -15.16 16 6 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -25.17 11.29 55.43 0.63 -24.55 16 9 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 O -0.34 -8.11 9.68 -39.23 -0.38 -8.49 16 14 C 0.46 9.06 5.32 36.01 0.19 9.25 16 15 O -0.50 -10.28 11.48 -18.76 -0.22 -10.50 16 16 C -0.11 -1.48 2.95 -93.13 -0.27 -1.75 16 17 H 0.14 1.70 8.14 -51.93 -0.42 1.28 16 18 C -0.10 -0.97 5.14 -26.51 -0.14 -1.10 16 19 C -0.15 -1.43 4.86 -26.60 -0.13 -1.56 16 20 C 0.10 0.93 3.06 -68.37 -0.21 0.72 16 21 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 22 C 0.44 4.57 2.79 37.16 0.10 4.67 16 23 F -0.17 -2.34 16.57 2.25 0.04 -2.30 16 24 F -0.17 -1.72 16.93 2.25 0.04 -1.68 16 25 F -0.18 -1.85 16.85 2.25 0.04 -1.81 16 26 N -0.72 -8.29 5.05 -54.85 -0.28 -8.57 16 27 C 0.54 8.12 6.88 -11.87 -0.08 8.04 16 28 O -0.50 -9.72 17.74 5.56 0.10 -9.63 16 29 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 30 H 0.05 1.18 7.80 -51.93 -0.40 0.78 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 33 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.10 0.98 7.71 -51.93 -0.40 0.58 16 36 H 0.09 0.53 8.13 -51.93 -0.42 0.10 16 37 H 0.10 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.10 1.42 5.78 -51.93 -0.30 1.12 16 39 H 0.41 4.45 8.26 -40.82 -0.34 4.11 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -32.80 331.50 -5.40 -38.20 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.51 Total: 3.38 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.83 Total: 4.42 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.35 Total: -33.12 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.50 Total: -28.62 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.80 -5.40 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188077904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.318 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds