Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 H 1.08998 * 109.47690 * 305.00511 * 3 2 1 5 5 C 1.50698 * 109.47457 * 185.00143 * 3 2 1 6 6 H 1.08002 * 120.00259 * 240.00652 * 5 3 2 7 7 C 1.37880 * 120.00016 * 59.99810 * 5 3 2 8 8 N 1.31515 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47415 * 90.00124 * 9 7 5 11 11 H 1.48500 * 109.47092 * 210.00594 * 9 7 5 12 12 H 1.48502 * 109.46907 * 329.99914 * 9 7 5 13 13 O 1.45206 * 109.46912 * 65.00160 * 3 2 1 14 14 C 1.34221 * 116.99859 * 270.00006 * 13 3 2 15 15 O 1.20834 * 120.00274 * 359.97438 * 14 13 3 16 16 C 1.50708 * 119.99918 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.39854 * 300.16685 * 16 14 13 18 18 C 1.53075 * 109.32992 * 180.38479 * 16 14 13 19 19 C 1.53344 * 108.42626 * 288.81450 * 18 16 14 20 20 C 1.52919 * 108.67264 * 292.47107 * 19 18 16 21 21 H 1.09002 * 109.30126 * 290.44160 * 20 19 18 22 22 C 1.53008 * 109.13202 * 170.95821 * 20 19 18 23 23 F 1.39900 * 109.46907 * 299.48422 * 22 20 19 24 24 F 1.39897 * 109.46665 * 59.48391 * 22 20 19 25 25 F 1.39898 * 109.46862 * 179.48213 * 22 20 19 26 26 N 1.45753 * 110.48895 * 50.75218 * 20 19 18 27 27 C 1.33351 * 124.10971 * 340.92872 * 26 20 19 28 28 O 1.21277 * 118.24852 * 182.19937 * 27 26 20 29 29 H 1.08996 * 109.47247 * 299.99526 * 1 2 3 30 30 H 1.09005 * 109.47223 * 59.99705 * 1 2 3 31 31 H 1.09004 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47110 * 240.00021 * 2 1 3 33 33 H 1.08994 * 109.47378 * 120.00755 * 2 1 3 34 34 H 0.96993 * 119.99684 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.67337 * 48.54899 * 18 16 14 36 36 H 1.08996 * 109.66772 * 169.04318 * 18 16 14 37 37 H 1.09000 * 109.60126 * 172.71428 * 19 18 16 38 38 H 1.09002 * 109.60004 * 52.22635 * 19 18 16 39 39 H 0.96999 * 117.94805 * 160.94192 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5539 -0.3519 -0.7600 11 1 6.3835 0.9216 -2.8166 12 1 6.5575 2.0720 -0.6890 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7253 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0070 3.4215 2.5089 17 1 -0.0687 2.6963 3.3192 18 6 -1.3663 4.0496 2.2588 19 6 -1.1872 5.2485 1.3197 20 6 -0.4105 6.3383 2.0596 21 1 -1.0391 6.7591 2.8443 22 6 -0.0294 7.4418 1.0706 23 9 0.7778 6.9054 0.0617 24 9 -1.1892 7.9803 0.5032 25 9 0.6717 8.4487 1.7429 26 7 0.7998 5.7867 2.6559 27 6 0.9958 4.4876 2.8842 28 8 2.0280 4.1490 3.4234 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 3.8292 -0.0610 -2.9499 35 1 -2.0265 3.3162 1.7958 36 1 -1.7945 4.3838 3.2038 37 1 -2.1643 5.6316 1.0253 38 1 -0.6309 4.9398 0.4346 39 1 1.5069 6.4033 2.9022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188077904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = -306.691124 kcal Electronic energy + Delta-G solvation = -29401.248035 eV Core-core repulsion = 24699.738731 eV Total energy + Delta-G solvation = -4701.509305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.23690 -48.74021 -48.71082 -42.31217 -40.76163 -38.29678 -37.46382 -35.53947 -34.43126 -33.33403 -31.90568 -29.45997 -28.15934 -25.42136 -24.60037 -23.99532 -23.13357 -21.71124 -20.41387 -19.78910 -19.47297 -19.35438 -18.80884 -18.66124 -17.95684 -17.59274 -17.21011 -16.64238 -16.44638 -15.72043 -15.70192 -15.48083 -15.20084 -15.13295 -14.95705 -14.91277 -14.83822 -14.80323 -14.68055 -14.01016 -13.93530 -13.56827 -13.36934 -13.27345 -13.11251 -12.86854 -12.60916 -12.57584 -12.33327 -12.20314 -12.17234 -11.75889 -11.48845 -11.32893 -11.07812 -10.84489 -10.58101 -10.53859 -8.31190 -6.47000 0.88386 1.32027 1.37081 1.38657 1.49425 1.54660 1.79239 2.07065 2.39066 2.59146 2.82356 2.95853 2.98240 3.31735 3.40913 3.53967 3.77667 3.94236 4.05391 4.37732 4.38774 4.40934 4.54440 4.56263 4.75157 4.81341 4.99466 5.09671 5.11595 5.21501 5.38679 5.43402 5.48569 5.66250 5.78177 5.95441 6.10973 6.55708 6.83187 6.91660 7.24071 8.75269 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.004354 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.455935 B = 6429.643420 C = 7096.521963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C 0.227 3.773 4 H 0.010 0.990 5 C -0.553 4.553 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.974 3.026 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.273 1.273 13 O -0.361 6.361 14 C 0.454 3.546 15 O -0.515 6.515 16 C -0.100 4.100 17 H 0.162 0.838 18 C -0.093 4.093 19 C -0.149 4.149 20 C 0.108 3.892 21 H 0.178 0.822 22 C 0.438 3.562 23 F -0.196 7.196 24 F -0.169 7.169 25 F -0.180 7.180 26 N -0.706 5.706 27 C 0.538 3.462 28 O -0.557 6.557 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.058 0.942 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 12.799 10.477 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.797 3.203 10 H -0.190 1.190 11 H -0.197 1.197 12 H -0.198 1.198 13 O -0.277 6.277 14 C 0.297 3.703 15 O -0.404 6.404 16 C -0.122 4.122 17 H 0.180 0.820 18 C -0.130 4.130 19 C -0.187 4.187 20 C 0.002 3.998 21 H 0.195 0.805 22 C 0.383 3.617 23 F -0.178 7.178 24 F -0.150 7.150 25 F -0.162 7.162 26 N -0.360 5.360 27 C 0.324 3.676 28 O -0.434 6.434 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.077 0.923 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.913 12.362 10.172 21.210 hybrid contribution 1.622 0.341 -0.846 1.861 sum -12.292 12.704 9.325 19.986 Atomic orbital electron populations 1.21705 0.95540 1.00871 1.00432 1.21869 0.95138 0.97654 1.02238 1.20377 0.94240 0.89568 0.78427 0.97225 1.21293 0.90999 1.40023 1.06705 0.92830 1.25696 1.03924 0.93851 0.94295 1.69983 1.37212 1.37804 1.09775 0.85316 0.78198 0.78979 0.77759 1.18965 1.19722 1.19829 1.86567 1.35828 1.62704 1.42594 1.23434 0.80040 0.76864 0.89971 1.90605 1.55301 1.58737 1.35790 1.21445 0.97205 0.97235 0.96275 0.82038 1.21699 0.91647 0.97016 1.02614 1.22204 1.03137 0.94541 0.98769 1.22612 0.88137 0.93100 0.95973 0.80525 1.21175 0.74987 0.83663 0.81853 1.93235 1.74773 1.86054 1.63733 1.93212 1.48385 1.87257 1.86150 1.93202 1.79833 1.63415 1.79737 1.45271 1.20514 1.07518 1.62733 1.19617 0.86783 0.83382 0.77789 1.90838 1.28619 1.80671 1.43274 0.93913 0.94149 0.91898 0.89563 0.93891 0.91914 0.87846 0.84451 0.84320 0.92290 0.75044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.57 71.98 0.62 -4.75 16 2 C -0.13 -6.62 5.49 30.59 0.17 -6.45 16 3 C 0.23 12.62 2.25 29.85 0.07 12.69 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -32.99 8.90 25.60 0.23 -32.76 16 6 H 0.05 3.27 7.81 -2.91 -0.02 3.25 16 7 C 0.02 1.28 5.29 84.66 0.45 1.73 16 8 N -0.91 -52.74 11.29 21.45 0.24 -52.49 16 9 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 O -0.36 -17.97 9.68 -51.33 -0.50 -18.47 16 14 C 0.45 17.94 5.32 71.24 0.38 18.32 16 15 O -0.51 -21.41 11.48 21.94 0.25 -21.16 16 16 C -0.10 -2.62 2.95 -12.42 -0.04 -2.66 16 17 H 0.16 3.55 8.14 -2.39 -0.02 3.53 16 18 C -0.09 -1.43 5.14 30.73 0.16 -1.27 16 19 C -0.15 -2.50 4.86 30.68 0.15 -2.35 16 20 C 0.11 1.58 3.06 45.11 0.14 1.71 16 21 H 0.18 0.79 8.14 -2.39 -0.02 0.77 16 22 C 0.44 8.31 2.79 71.98 0.20 8.51 16 23 F -0.20 -5.51 16.57 44.97 0.75 -4.76 16 24 F -0.17 -2.90 16.93 44.97 0.76 -2.14 16 25 F -0.18 -3.34 16.85 44.97 0.76 -2.58 16 26 N -0.71 -15.20 5.05 -446.64 -2.25 -17.45 16 27 C 0.54 15.81 6.88 87.71 0.60 16.41 16 28 O -0.56 -21.85 17.74 -3.02 -0.05 -21.90 16 29 H 0.04 1.65 6.06 -2.39 -0.01 1.64 16 30 H 0.04 1.77 7.80 -2.38 -0.02 1.75 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.09 4.76 5.95 -2.38 -0.01 4.75 16 33 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.10 1.64 7.71 -2.38 -0.02 1.62 16 36 H 0.14 0.81 8.13 -2.39 -0.02 0.79 16 37 H 0.14 1.38 8.04 -2.39 -0.02 1.36 16 38 H 0.06 1.58 5.78 -2.39 -0.01 1.57 16 39 H 0.41 8.52 8.26 -92.71 -0.77 7.75 16 Total: -1.00 -76.86 331.50 5.45 -71.41 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.35 Total: 13.60 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 3.12 Total: 9.13 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -2.01 Total: -69.95 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -0.30 Total: -61.53 kcal Atomic # 9 Polarization: -11.75 SS G_CDS: 2.26 Total: -9.49 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -76.86 5.45 -71.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188077904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.282 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -312.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -306.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds