Wall clock time and date at job start Tue Mar 31 2020 13:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47480 * 2 1 4 4 C 1.50697 * 109.47595 * 120.00942 * 2 1 3 5 5 C 1.38366 * 119.85346 * 299.99871 * 4 2 1 6 6 C 1.37941 * 120.15771 * 179.97438 * 5 4 2 7 7 C 1.39601 * 119.87831 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.13478 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99539 * 173.12634 * 8 7 6 10 10 N 1.34773 * 119.99851 * 353.12045 * 8 7 6 11 11 C 1.47589 * 134.48811 * 174.44061 * 10 8 7 12 12 C 1.53946 * 86.11523 * 155.36123 * 11 10 8 13 13 O 1.42901 * 113.74073 * 269.15537 * 12 11 10 14 14 C 1.50691 * 113.74157 * 137.95405 * 12 11 10 15 15 H 1.08004 * 120.00179 * 1.92408 * 14 12 11 16 16 C 1.37876 * 120.00289 * 181.92439 * 14 12 11 17 17 N 1.31519 * 119.99853 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00380 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47194 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47381 * 300.00276 * 18 16 14 21 21 H 1.48499 * 109.46876 * 60.00261 * 18 16 14 22 22 C 1.47812 * 134.46304 * 354.31238 * 10 8 7 23 23 C 1.39531 * 119.72513 * 0.25866 * 7 6 5 24 24 C 1.38105 * 119.83894 * 359.48730 * 23 7 6 25 25 Cl 1.73602 * 119.94210 * 180.22917 * 24 23 7 26 26 H 1.09001 * 109.46331 * 299.99482 * 1 2 3 27 27 H 1.09000 * 109.47131 * 59.99504 * 1 2 3 28 28 H 1.08998 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46514 * 240.00931 * 2 1 3 30 30 H 1.08994 * 109.47138 * 300.00739 * 3 2 1 31 31 H 1.09004 * 109.46372 * 60.00381 * 3 2 1 32 32 H 1.08992 * 109.47285 * 180.02562 * 3 2 1 33 33 H 1.08003 * 119.92346 * 359.97438 * 5 4 2 34 34 H 1.07995 * 120.06263 * 180.02562 * 6 5 4 35 35 H 1.08999 * 113.76562 * 41.06189 * 11 10 8 36 36 H 1.08999 * 113.86961 * 269.67782 * 11 10 8 37 37 H 0.96706 * 113.99817 * 178.07392 * 13 12 11 38 38 H 0.97001 * 120.00158 * 180.02562 * 17 16 14 39 39 H 1.09002 * 113.76534 * 90.37181 * 22 10 8 40 40 H 1.08996 * 113.83227 * 318.91555 * 22 10 8 41 41 H 1.08001 * 120.08313 * 179.74861 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7106 1.2303 5 6 1.6965 -0.2354 2.4856 6 6 2.1525 -0.8813 3.6160 7 6 2.9553 -2.0166 3.4921 8 6 3.4477 -2.7129 4.6998 9 8 4.0401 -3.7689 4.5934 10 7 3.2397 -2.1767 5.9187 11 6 3.4880 -2.6261 7.3024 12 6 3.5197 -1.1317 7.6708 13 8 4.8235 -0.5504 7.6046 14 6 2.7962 -0.8073 8.9522 15 1 2.3450 -1.5984 9.5329 16 6 2.7102 0.4994 9.3836 17 7 3.2592 1.4628 8.6763 18 14 1.8127 0.9017 10.9717 19 1 1.8619 2.3665 11.2107 20 1 0.3973 0.4654 10.8647 21 1 2.4650 0.1931 12.1020 22 6 2.6734 -0.9012 6.4057 23 6 3.2960 -2.4880 2.2237 24 6 2.8288 -1.8355 1.0998 25 17 3.2462 -2.4232 -0.4795 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.0756 0.6432 2.5807 34 1 1.8889 -0.5093 4.5950 35 1 4.4444 -3.1317 7.4351 36 1 2.6541 -3.1703 7.7457 37 1 4.8433 0.3950 7.8068 38 1 3.1990 2.3821 8.9799 39 1 1.5986 -0.9372 6.5835 40 1 2.9807 -0.0322 5.8239 41 1 3.9201 -3.3634 2.1212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193969218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:11 Heat of formation + Delta-G solvation = -37.330356 kcal Electronic energy + Delta-G solvation = -24955.284739 eV Core-core repulsion = 21248.021699 eV Total energy + Delta-G solvation = -3707.263040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27510 -39.10183 -37.38180 -36.50909 -35.37185 -34.04820 -32.27954 -30.94937 -30.33885 -28.40484 -27.33587 -25.64740 -25.55525 -23.79533 -22.68332 -20.73931 -19.91376 -18.94186 -17.59060 -16.86537 -16.63307 -15.53864 -15.40742 -15.10076 -14.82441 -14.64278 -14.27551 -14.04696 -13.97320 -13.74952 -13.36644 -12.99971 -12.82615 -12.66547 -12.41119 -12.35793 -12.07189 -11.81961 -11.62831 -11.53410 -11.41312 -11.26039 -11.10370 -11.05905 -10.93079 -10.60150 -10.51016 -10.35264 -9.73755 -9.31865 -8.94505 -8.82478 -8.71263 -8.46040 -7.91924 -6.44768 -4.55441 0.81536 1.18032 2.01454 3.03103 3.12787 3.19145 3.21229 3.42665 3.92048 4.14360 4.36945 4.55318 4.75739 4.85821 4.92365 4.97700 5.12180 5.20049 5.27767 5.42997 5.46648 5.59107 5.62060 5.63354 5.76563 5.79079 5.85869 5.97315 6.04165 6.07689 6.15574 6.29162 6.31422 6.36383 6.37697 6.52642 6.55842 6.74097 7.01915 7.57306 7.75542 8.34645 8.47865 8.63930 9.15977 9.36786 10.61904 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.003360 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.364543 B = 8330.295602 C = 9431.507157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.051 4.051 5 C -0.113 4.113 6 C -0.087 4.087 7 C -0.111 4.111 8 C 0.570 3.430 9 O -0.558 6.558 10 N -0.625 5.625 11 C 0.113 3.887 12 C 0.241 3.759 13 O -0.571 6.571 14 C -0.539 4.539 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.284 1.284 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.070 3.930 23 C -0.054 4.054 24 C -0.046 4.046 25 Cl -0.069 7.069 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.392 0.608 38 H 0.274 0.726 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 0.944 -14.869 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.201 4.201 4 C -0.052 4.052 5 C -0.131 4.131 6 C -0.105 4.105 7 C -0.114 4.114 8 C 0.360 3.640 9 O -0.439 6.439 10 N -0.357 5.357 11 C -0.009 4.009 12 C 0.199 3.801 13 O -0.383 6.383 14 C -0.577 4.577 15 H 0.090 0.910 16 C -0.129 4.129 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.198 1.198 22 C -0.053 4.053 23 C -0.073 4.073 24 C -0.073 4.073 25 Cl -0.040 7.040 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.247 0.753 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.167 -0.135 -15.394 16.238 hybrid contribution -0.635 0.835 0.749 1.289 sum -5.802 0.701 -14.645 15.768 Atomic orbital electron populations 1.21845 0.93824 1.02184 1.02145 1.20315 0.96397 0.96439 0.95439 1.21848 1.01474 0.94583 1.02159 1.19882 0.95752 0.93622 0.95910 1.20922 1.00895 1.00585 0.90667 1.22182 0.94428 0.93188 1.00699 1.19958 1.00898 0.97349 0.93242 1.17759 0.79912 0.84196 0.82141 1.90714 1.43345 1.23597 1.86264 1.50084 1.59863 1.21326 1.04432 1.23497 1.00812 0.99155 0.77388 1.19829 0.81741 0.87566 0.90973 1.86080 1.28552 1.30753 1.92895 1.21461 1.35322 0.93530 1.07422 0.91021 1.25059 0.94534 0.95895 0.97421 1.69391 1.44548 1.01005 1.38798 0.86394 0.80053 0.77372 0.82757 1.20991 1.19879 1.19829 1.24515 0.99648 0.84307 0.96790 1.21088 0.97506 0.99184 0.89542 1.20607 1.02786 0.97708 0.86173 1.98339 1.92454 1.87835 1.25406 0.92189 0.92164 0.92447 0.89390 0.92167 0.92142 0.92360 0.84630 0.83128 0.90871 0.89319 0.75331 0.91575 0.89573 0.90599 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.01 37.16 0.33 -0.85 16 2 C -0.07 -0.65 2.99 -91.77 -0.27 -0.92 16 3 C -0.14 -1.24 9.01 37.16 0.33 -0.91 16 4 C -0.05 -0.61 4.79 -104.50 -0.50 -1.11 16 5 C -0.11 -1.40 8.69 -39.64 -0.34 -1.75 16 6 C -0.09 -1.30 9.08 -39.18 -0.36 -1.66 16 7 C -0.11 -1.92 5.87 -104.97 -0.62 -2.53 16 8 C 0.57 11.81 7.99 -12.33 -0.10 11.71 16 9 O -0.56 -12.99 17.10 5.32 0.09 -12.90 16 10 N -0.62 -12.93 3.60 -179.21 -0.64 -13.58 16 11 C 0.11 2.40 8.23 -2.96 -0.02 2.37 16 12 C 0.24 5.54 1.40 -90.85 -0.13 5.41 16 13 O -0.57 -14.28 13.48 -35.23 -0.48 -14.75 16 14 C -0.54 -12.96 8.61 -34.45 -0.30 -13.26 16 15 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 16 C 0.07 1.76 5.39 -17.82 -0.10 1.67 16 17 N -0.90 -21.76 11.20 55.43 0.62 -21.14 16 18 Si 0.91 18.77 29.54 -169.99 -5.02 13.74 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C 0.07 1.41 5.61 -2.84 -0.02 1.39 16 23 C -0.05 -0.84 9.37 -39.15 -0.37 -1.21 16 24 C -0.05 -0.62 6.31 -39.56 -0.25 -0.87 16 25 Cl -0.07 -0.82 26.98 -51.86 -1.40 -2.22 16 26 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.85 6.15 -51.93 -0.32 0.53 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.14 1.37 7.08 -52.48 -0.37 1.00 16 34 H 0.15 2.29 4.09 -52.49 -0.21 2.08 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 37 H 0.39 9.83 6.60 45.56 0.30 10.13 16 38 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 39 H 0.09 1.63 8.00 -51.93 -0.42 1.21 16 40 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 41 H 0.14 2.28 7.67 -52.49 -0.40 1.88 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -27.06 351.72 -8.85 -35.92 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.63 Total: 12.16 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.70 Total: -2.54 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.02 Total: -34.72 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.38 Total: -27.65 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.40 Total: -2.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.06 -8.85 -35.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193969218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.415 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds