Wall clock time and date at job start Tue Mar 31 2020 13:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47480 * 2 1 4 4 C 1.50697 * 109.47595 * 120.00942 * 2 1 3 5 5 C 1.38366 * 119.85346 * 299.99871 * 4 2 1 6 6 C 1.37941 * 120.15771 * 179.97438 * 5 4 2 7 7 C 1.39601 * 119.87831 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.13478 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99539 * 173.12634 * 8 7 6 10 10 N 1.34773 * 119.99851 * 353.12045 * 8 7 6 11 11 C 1.47589 * 134.48811 * 174.44061 * 10 8 7 12 12 C 1.53946 * 86.11523 * 155.36123 * 11 10 8 13 13 O 1.42901 * 113.74073 * 269.15537 * 12 11 10 14 14 C 1.50691 * 113.74157 * 137.95405 * 12 11 10 15 15 H 1.08004 * 120.00179 * 1.92408 * 14 12 11 16 16 C 1.37876 * 120.00289 * 181.92439 * 14 12 11 17 17 N 1.31519 * 119.99853 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00380 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47194 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47381 * 300.00276 * 18 16 14 21 21 H 1.48499 * 109.46876 * 60.00261 * 18 16 14 22 22 C 1.47812 * 134.46304 * 354.31238 * 10 8 7 23 23 C 1.39531 * 119.72513 * 0.25866 * 7 6 5 24 24 C 1.38105 * 119.83894 * 359.48730 * 23 7 6 25 25 Cl 1.73602 * 119.94210 * 180.22917 * 24 23 7 26 26 H 1.09001 * 109.46331 * 299.99482 * 1 2 3 27 27 H 1.09000 * 109.47131 * 59.99504 * 1 2 3 28 28 H 1.08998 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46514 * 240.00931 * 2 1 3 30 30 H 1.08994 * 109.47138 * 300.00739 * 3 2 1 31 31 H 1.09004 * 109.46372 * 60.00381 * 3 2 1 32 32 H 1.08992 * 109.47285 * 180.02562 * 3 2 1 33 33 H 1.08003 * 119.92346 * 359.97438 * 5 4 2 34 34 H 1.07995 * 120.06263 * 180.02562 * 6 5 4 35 35 H 1.08999 * 113.76562 * 41.06189 * 11 10 8 36 36 H 1.08999 * 113.86961 * 269.67782 * 11 10 8 37 37 H 0.96706 * 113.99817 * 178.07392 * 13 12 11 38 38 H 0.97001 * 120.00158 * 180.02562 * 17 16 14 39 39 H 1.09002 * 113.76534 * 90.37181 * 22 10 8 40 40 H 1.08996 * 113.83227 * 318.91555 * 22 10 8 41 41 H 1.08001 * 120.08313 * 179.74861 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7106 1.2303 5 6 1.6965 -0.2354 2.4856 6 6 2.1525 -0.8813 3.6160 7 6 2.9553 -2.0166 3.4921 8 6 3.4477 -2.7129 4.6998 9 8 4.0401 -3.7689 4.5934 10 7 3.2397 -2.1767 5.9187 11 6 3.4880 -2.6261 7.3024 12 6 3.5197 -1.1317 7.6708 13 8 4.8235 -0.5504 7.6046 14 6 2.7962 -0.8073 8.9522 15 1 2.3450 -1.5984 9.5329 16 6 2.7102 0.4994 9.3836 17 7 3.2592 1.4628 8.6763 18 14 1.8127 0.9017 10.9717 19 1 1.8619 2.3665 11.2107 20 1 0.3973 0.4654 10.8647 21 1 2.4650 0.1931 12.1020 22 6 2.6734 -0.9012 6.4057 23 6 3.2960 -2.4880 2.2237 24 6 2.8288 -1.8355 1.0998 25 17 3.2462 -2.4232 -0.4795 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.0756 0.6432 2.5807 34 1 1.8889 -0.5093 4.5950 35 1 4.4444 -3.1317 7.4351 36 1 2.6541 -3.1703 7.7457 37 1 4.8433 0.3950 7.8068 38 1 3.1990 2.3821 8.9799 39 1 1.5986 -0.9372 6.5835 40 1 2.9807 -0.0322 5.8239 41 1 3.9201 -3.3634 2.1212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193969218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:11 Heat of formation + Delta-G solvation = -52.656725 kcal Electronic energy + Delta-G solvation = -24955.949340 eV Core-core repulsion = 21248.021699 eV Total energy + Delta-G solvation = -3707.927642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68496 -40.44431 -39.01503 -37.53665 -36.34002 -35.86090 -34.14336 -32.13777 -31.52585 -29.96460 -27.96706 -27.29624 -27.23141 -24.99781 -23.82684 -22.12086 -21.04773 -20.50889 -19.35167 -18.38803 -17.94056 -17.09188 -16.63443 -16.53187 -16.40835 -15.97202 -15.81366 -15.13964 -15.06516 -14.85585 -14.66107 -14.37668 -14.20919 -13.93909 -13.70842 -13.61371 -13.41156 -13.02633 -12.98251 -12.76119 -12.69493 -12.51838 -12.30946 -12.21602 -12.18900 -12.04620 -11.89259 -11.47066 -11.31889 -11.04330 -10.64022 -10.24606 -10.06001 -9.85385 -9.57414 -8.25248 -6.42184 -0.37760 0.05903 0.95634 1.49960 1.52822 1.59194 1.66517 1.84849 2.42287 2.60926 2.97166 3.24950 3.54783 3.63993 3.73891 3.93744 4.07558 4.12129 4.21907 4.27712 4.28031 4.42949 4.55088 4.57765 4.69835 4.76042 4.80085 4.83748 4.84943 4.95265 5.01421 5.04533 5.12337 5.16158 5.22701 5.27456 5.40787 5.48417 5.60454 5.73677 5.93181 6.63167 6.71740 7.01278 7.31116 7.44598 8.80690 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.003360 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.364543 B = 8330.295602 C = 9431.507157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.038 4.038 5 C -0.104 4.104 6 C -0.088 4.088 7 C -0.136 4.136 8 C 0.564 3.436 9 O -0.595 6.595 10 N -0.627 5.627 11 C 0.111 3.889 12 C 0.221 3.779 13 O -0.587 6.587 14 C -0.558 4.558 15 H 0.073 0.927 16 C 0.038 3.962 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.283 1.283 20 H -0.266 1.266 21 H -0.278 1.278 22 C 0.088 3.912 23 C -0.062 4.062 24 C -0.050 4.050 25 Cl -0.053 7.053 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.388 0.612 38 H 0.276 0.724 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 2.500 -16.086 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.200 4.200 4 C -0.039 4.039 5 C -0.122 4.122 6 C -0.106 4.106 7 C -0.140 4.140 8 C 0.356 3.644 9 O -0.479 6.479 10 N -0.359 5.359 11 C -0.011 4.011 12 C 0.179 3.821 13 O -0.399 6.399 14 C -0.596 4.596 15 H 0.091 0.909 16 C -0.163 4.163 17 N -0.554 5.554 18 Si 0.791 3.209 19 H -0.208 1.208 20 H -0.191 1.191 21 H -0.203 1.203 22 C -0.033 4.033 23 C -0.082 4.082 24 C -0.077 4.077 25 Cl -0.024 7.024 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.184 0.816 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.136 1.424 -16.621 18.144 hybrid contribution 0.004 0.352 1.032 1.090 sum -7.132 1.777 -15.589 17.235 Atomic orbital electron populations 1.21855 0.92390 1.02217 1.03413 1.20412 0.97477 0.96777 0.93856 1.21863 1.00911 0.93837 1.03402 1.20280 0.93954 0.92585 0.97078 1.21215 1.00303 1.00890 0.89748 1.22163 0.94261 0.92633 1.01574 1.19730 1.03242 0.98869 0.92118 1.18351 0.79170 0.83959 0.82942 1.90674 1.45097 1.25278 1.86828 1.50099 1.59911 1.21479 1.04384 1.23540 1.00970 0.98402 0.78180 1.20112 0.81360 0.88461 0.92126 1.86069 1.30205 1.30550 1.93055 1.21671 1.35807 0.93967 1.08133 0.90911 1.25684 0.95089 0.95709 0.99848 1.69452 1.44927 1.01208 1.39773 0.85482 0.79202 0.76939 0.79254 1.20827 1.19124 1.20327 1.24340 0.99917 0.84085 0.95007 1.21030 0.97924 0.99280 0.89918 1.20681 1.02723 0.97961 0.86318 1.98343 1.92368 1.87761 1.23946 0.91559 0.90357 0.93056 0.89358 0.90287 0.91635 0.93307 0.81561 0.83434 0.92260 0.87360 0.75771 0.91399 0.88008 0.90484 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.01 71.98 0.65 -1.20 16 2 C -0.07 -1.08 2.99 -11.54 -0.03 -1.11 16 3 C -0.14 -1.99 9.01 71.98 0.65 -1.35 16 4 C -0.04 -0.83 4.79 -19.79 -0.09 -0.93 16 5 C -0.10 -2.33 8.69 22.23 0.19 -2.14 16 6 C -0.09 -2.55 9.08 22.53 0.20 -2.35 16 7 C -0.14 -4.74 5.87 -20.09 -0.12 -4.86 16 8 C 0.56 24.00 7.99 86.79 0.69 24.69 16 9 O -0.59 -28.82 17.10 -3.88 -0.07 -28.89 16 10 N -0.63 -26.36 3.60 -843.00 -3.03 -29.39 16 11 C 0.11 4.79 8.23 86.48 0.71 5.50 16 12 C 0.22 10.23 1.40 -10.88 -0.02 10.21 16 13 O -0.59 -29.98 13.48 -148.98 -2.01 -31.99 16 14 C -0.56 -26.68 8.61 25.60 0.22 -26.46 16 15 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 16 C 0.04 1.78 5.39 84.65 0.46 2.24 16 17 N -0.91 -43.88 11.20 21.45 0.24 -43.64 16 18 Si 0.97 37.74 29.54 68.60 2.03 39.77 16 19 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 22 C 0.09 3.55 5.61 86.44 0.48 4.03 16 23 C -0.06 -1.95 9.37 22.55 0.21 -1.74 16 24 C -0.05 -1.30 6.31 22.29 0.14 -1.16 16 25 Cl -0.05 -1.19 26.98 -2.72 -0.07 -1.26 16 26 H 0.07 0.80 7.38 -2.39 -0.02 0.78 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.45 6.15 -2.38 -0.01 1.44 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.86 7.38 -2.38 -0.02 0.84 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.17 2.71 7.08 -2.91 -0.02 2.69 16 34 H 0.15 4.33 4.09 -2.91 -0.01 4.31 16 35 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.11 4.17 8.09 -2.39 -0.02 4.15 16 37 H 0.39 19.87 6.60 -74.05 -0.49 19.39 16 38 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 39 H 0.10 3.74 8.00 -2.39 -0.02 3.73 16 40 H 0.08 3.06 6.90 -2.39 -0.02 3.04 16 41 H 0.13 4.38 7.67 -2.91 -0.02 4.36 16 Total: -1.00 -58.25 351.72 2.02 -56.23 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.58 Total: 35.79 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.35 Total: 3.38 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.79 Total: -73.03 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -2.08 Total: -60.88 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.07 Total: -1.26 kcal Total: -58.25 2.02 -56.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193969218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.573 kcal (2) G-P(sol) polarization free energy of solvation -58.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds