Wall clock time and date at job start Tue Mar 31 2020 13:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47061 * 2 1 4 4 C 1.52993 * 109.47522 * 120.00241 * 2 1 3 5 5 N 1.46501 * 109.46878 * 64.04208 * 4 2 1 6 6 C 1.46505 * 120.00128 * 273.78992 * 5 4 2 7 7 C 1.50695 * 109.47095 * 291.24109 * 6 5 4 8 8 H 1.08001 * 120.00134 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99820 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00214 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99898 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47050 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46840 * 120.00331 * 11 9 7 14 14 H 1.48505 * 109.47117 * 240.00411 * 11 9 7 15 15 S 1.65597 * 120.00095 * 93.79231 * 5 4 2 16 16 O 1.42106 * 106.40417 * 164.69257 * 15 5 4 17 17 O 1.42098 * 106.40345 * 31.77240 * 15 5 4 18 18 C 1.76198 * 107.21970 * 278.23260 * 15 5 4 19 19 C 1.38532 * 120.47462 * 112.87764 * 18 15 5 20 20 C 1.38658 * 118.50752 * 180.02562 * 19 18 15 21 21 C 1.38508 * 119.37820 * 359.97438 * 20 19 18 22 22 N 1.31558 * 120.91547 * 359.97438 * 21 20 19 23 23 C 1.32815 * 121.61975 * 0.02562 * 22 21 20 24 24 C 1.43204 * 119.73732 * 179.72490 * 23 22 21 25 25 N 4.93616 * 63.57440 * 184.38206 * 2 1 3 26 26 H 1.08998 * 109.46327 * 172.12274 * 1 2 3 27 27 H 1.08994 * 109.46722 * 292.12230 * 1 2 3 28 28 H 1.09000 * 109.47149 * 52.12403 * 1 2 3 29 29 H 1.09008 * 109.47054 * 240.00928 * 2 1 3 30 30 H 1.08998 * 109.46860 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47022 * 300.00594 * 3 2 1 32 32 H 1.09004 * 109.46631 * 60.00070 * 3 2 1 33 33 H 1.08996 * 109.47636 * 304.04365 * 4 2 1 34 34 H 1.09000 * 109.47154 * 184.04215 * 4 2 1 35 35 H 1.09004 * 109.46396 * 51.23999 * 6 5 4 36 36 H 1.09002 * 109.47000 * 171.23982 * 6 5 4 37 37 H 0.96998 * 120.00289 * 179.97438 * 10 9 7 38 38 H 1.07998 * 120.74992 * 0.04474 * 19 18 15 39 39 H 1.08001 * 120.30659 * 179.97438 * 20 19 18 40 40 H 1.08010 * 119.53893 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6329 -2.1277 1.2013 6 6 0.3183 -2.5274 1.7096 7 6 0.2889 -2.3671 3.2077 8 1 1.1620 -2.0034 3.7291 9 6 -0.8529 -2.6837 3.9126 10 7 -1.9163 -3.1261 3.2777 11 14 -0.8895 -2.4843 5.7697 12 1 0.4236 -1.9734 6.2386 13 1 -1.9568 -1.5217 6.1431 14 1 -1.1647 -3.7989 6.4033 15 16 2.6586 -3.2658 0.5729 16 8 2.1571 -4.5297 0.9857 17 8 3.9769 -2.8209 0.8615 18 6 2.4876 -3.2110 -1.1799 19 6 3.5353 -2.7756 -1.9748 20 6 3.3561 -2.7485 -3.3494 21 6 2.1450 -3.1546 -3.8850 22 7 1.1660 -3.5649 -3.1079 23 6 1.2963 -3.6063 -1.7868 24 6 0.2021 -4.0543 -0.9788 25 7 -0.6667 -4.4075 -0.3377 26 1 -0.3632 -1.0180 -0.1408 27 1 -0.3632 0.3870 0.9520 28 1 -0.3633 0.6309 -0.8112 29 1 1.8934 -0.5137 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6189 -0.2511 2.1377 34 1 3.1277 -0.6589 1.2860 35 1 -0.4510 -1.8982 1.2617 36 1 0.1307 -3.5698 1.4519 37 1 -2.7195 -3.3491 3.7737 38 1 4.4708 -2.4645 -1.5337 39 1 4.1535 -2.4138 -3.9965 40 1 2.0025 -3.1341 -4.9554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232600726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:04 Heat of formation + Delta-G solvation = 5.727793 kcal Electronic energy + Delta-G solvation = -26624.502018 eV Core-core repulsion = 22953.442576 eV Total energy + Delta-G solvation = -3671.059441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52683 -37.32394 -37.11621 -36.09136 -35.44761 -33.68462 -33.02695 -32.14180 -31.95240 -27.69018 -26.75220 -25.22927 -25.07290 -24.29552 -22.18420 -20.12906 -19.78784 -18.68785 -17.53313 -17.13449 -16.69567 -16.35755 -15.77017 -15.43660 -14.84496 -14.55596 -14.44332 -14.14769 -13.94729 -13.44267 -13.30907 -12.88583 -12.74709 -12.72333 -12.70363 -12.25269 -12.08745 -11.85694 -11.65238 -11.60896 -11.36013 -11.28094 -11.18297 -11.15311 -10.88934 -10.61006 -10.60656 -10.23741 -10.16328 -10.00340 -9.89824 -9.62747 -9.55730 -8.43901 -8.05312 -6.02519 -4.08116 0.08841 0.65355 0.77488 2.70187 2.79476 3.30864 3.35175 3.39184 3.40608 3.43451 3.75256 4.03890 4.28749 4.42978 4.46197 4.55978 4.88602 4.95863 5.05411 5.10764 5.20141 5.31157 5.31325 5.48966 5.61944 5.63346 5.85751 5.90877 6.07593 6.08695 6.16314 6.27180 6.32816 6.55668 6.60552 6.79623 7.26538 7.31459 7.40766 7.55410 7.62955 7.91609 8.22368 8.94000 9.55899 11.05056 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.005669 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.033971 B = 4937.899772 C = 5366.037302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.124 3.876 5 N -0.972 5.972 6 C 0.229 3.771 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.064 3.936 10 N -0.883 5.883 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 S 2.674 3.326 16 O -0.936 6.936 17 O -0.963 6.963 18 C -0.692 4.692 19 C 0.021 3.979 20 C -0.175 4.175 21 C 0.149 3.851 22 N -0.466 5.466 23 C 0.316 3.684 24 C 0.193 3.807 25 N -0.285 5.285 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.263 0.737 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.834 6.177 -15.025 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.201 4.201 4 C -0.002 4.002 5 N -0.812 5.812 6 C 0.108 3.892 7 C -0.573 4.573 8 H 0.081 0.919 9 C -0.139 4.139 10 N -0.521 5.521 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 S 2.759 3.241 16 O -0.925 6.925 17 O -0.953 6.953 18 C -0.778 4.778 19 C -0.006 4.006 20 C -0.196 4.196 21 C -0.009 4.009 22 N -0.176 5.176 23 C 0.176 3.824 24 C -0.125 4.125 25 N 0.039 4.961 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.045 4.735 -13.983 17.314 hybrid contribution 0.681 0.706 0.297 1.025 sum 9.726 5.441 -13.687 17.650 Atomic orbital electron populations 1.21943 0.94373 1.02257 1.01669 1.21638 0.97368 0.96240 0.98531 1.21766 1.00637 0.95789 1.01868 1.21405 0.99206 0.80860 0.98755 1.57386 1.33144 1.18086 1.72560 1.19797 0.76642 0.97698 0.95051 1.21390 0.99042 1.45181 0.91643 0.91871 1.24941 0.95477 0.94951 0.98552 1.69967 1.02962 1.43519 1.35630 0.86506 0.78017 0.77827 0.85454 1.19656 1.21006 1.20882 1.02783 0.73851 0.74488 0.73024 1.93641 1.80095 1.39520 1.79275 1.93514 1.36532 1.82442 1.82785 1.32691 1.00708 1.13130 1.31282 1.21426 0.97115 0.88539 0.93499 1.22461 0.99647 1.01542 0.95972 1.23112 0.87904 0.89651 1.00229 1.67689 1.32395 1.14056 1.03496 1.15678 0.86558 0.91374 0.88809 1.24921 0.94463 0.97536 0.95602 1.81431 1.07540 1.02909 1.04264 0.91829 0.91702 0.93925 0.92404 0.92753 0.92924 0.92221 0.88417 0.90438 0.93824 0.92091 0.92730 0.81974 0.83055 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 7.96 37.16 0.30 -2.01 16 2 C -0.12 -1.65 3.13 -90.62 -0.28 -1.94 16 3 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 4 C 0.12 2.07 5.10 -4.05 -0.02 2.05 16 5 N -0.97 -19.66 2.73 -115.66 -0.32 -19.98 16 6 C 0.23 5.67 3.94 -5.19 -0.02 5.64 16 7 C -0.53 -14.59 8.76 -34.44 -0.30 -14.89 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.88 -25.94 13.29 55.43 0.74 -25.21 16 11 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 S 2.67 51.53 5.09 -107.50 -0.55 50.99 16 16 O -0.94 -21.72 15.10 -57.17 -0.86 -22.58 16 17 O -0.96 -18.17 15.81 -57.17 -0.90 -19.08 16 18 C -0.69 -10.54 5.42 -39.03 -0.21 -10.75 16 19 C 0.02 0.22 9.66 -39.32 -0.38 -0.16 16 20 C -0.18 -1.38 10.11 -39.33 -0.40 -1.78 16 21 C 0.15 1.35 11.18 -17.57 -0.20 1.16 16 22 N -0.47 -6.37 10.28 -11.15 -0.11 -6.49 16 23 C 0.32 5.15 6.58 -85.07 -0.56 4.59 16 24 C 0.19 3.84 12.03 -22.47 -0.27 3.57 16 25 N -0.29 -6.47 16.36 41.84 0.68 -5.79 16 26 H 0.06 1.16 5.89 -51.93 -0.31 0.86 16 27 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 28 H 0.04 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.06 0.76 7.60 -51.92 -0.39 0.37 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.72 7.65 -51.93 -0.40 1.32 16 34 H 0.08 1.16 7.06 -51.93 -0.37 0.80 16 35 H 0.04 1.10 5.06 -51.93 -0.26 0.84 16 36 H 0.06 1.65 4.16 -51.93 -0.22 1.44 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.16 1.46 7.44 -52.49 -0.39 1.07 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -34.32 345.81 -8.07 -42.40 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.84 Total: -1.98 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.10 Total: -14.06 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.99 Total: -57.46 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.77 Total: -41.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.55 Total: 50.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.32 -8.07 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232600726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.126 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds