Wall clock time and date at job start Tue Mar 31 2020 14:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46780 * 2 1 4 4 H 1.08996 * 109.47255 * 304.77895 * 3 2 1 5 5 C 1.50700 * 109.47161 * 184.77485 * 3 2 1 6 6 H 1.07998 * 120.00576 * 245.45892 * 5 3 2 7 7 C 1.37879 * 119.99754 * 65.45306 * 5 3 2 8 8 N 1.31518 * 119.99700 * 9.49393 * 7 5 3 9 9 Si 1.86797 * 120.00179 * 189.49047 * 7 5 3 10 10 H 1.48503 * 109.47027 * 84.99629 * 9 7 5 11 11 H 1.48497 * 109.47202 * 204.99743 * 9 7 5 12 12 H 1.48497 * 109.47144 * 324.99661 * 9 7 5 13 13 O 1.45201 * 109.47055 * 64.77807 * 3 2 1 14 14 C 1.34222 * 117.00361 * 269.99973 * 13 3 2 15 15 O 1.20825 * 119.99873 * 359.97438 * 14 13 3 16 16 C 1.50704 * 120.00479 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.32630 * 299.78571 * 16 14 13 18 18 C 1.53067 * 109.40196 * 179.97438 * 16 14 13 19 19 C 1.53346 * 108.42571 * 190.97305 * 18 16 14 20 20 C 1.52915 * 108.67743 * 67.52872 * 19 18 16 21 21 H 1.08998 * 109.30164 * 69.55970 * 20 19 18 22 22 C 1.52999 * 109.30306 * 188.93811 * 20 19 18 23 23 F 1.39898 * 109.47312 * 181.03565 * 22 20 19 24 24 F 1.39901 * 109.46911 * 301.03786 * 22 20 19 25 25 F 1.39900 * 109.47144 * 61.03413 * 22 20 19 26 26 N 1.45756 * 110.48880 * 309.25023 * 20 19 18 27 27 C 1.33358 * 124.10722 * 19.06826 * 26 20 19 28 28 O 1.21281 * 118.24812 * 177.78144 * 27 26 20 29 29 H 1.09008 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47041 * 299.99552 * 1 2 3 31 31 H 1.08998 * 109.47380 * 60.00314 * 1 2 3 32 32 H 1.08997 * 109.47104 * 239.99947 * 2 1 3 33 33 H 1.09007 * 109.47192 * 119.99724 * 2 1 3 34 34 H 0.97000 * 119.99592 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.67553 * 71.23719 * 18 16 14 36 36 H 1.09000 * 109.70524 * 310.72297 * 18 16 14 37 37 H 1.09003 * 109.59557 * 307.77244 * 19 18 16 38 38 H 1.08998 * 109.60479 * 187.29113 * 19 18 16 39 39 H 0.96997 * 117.94883 * 198.79092 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6084 1.9805 -0.8440 5 6 3.5423 1.4443 -0.1183 6 1 4.1479 1.8096 0.6979 7 6 4.1438 0.9793 -1.2685 8 7 3.4144 0.7104 -2.3294 9 14 5.9945 0.7315 -1.3202 10 1 6.3300 -0.6078 -0.7733 11 1 6.4674 0.8254 -2.7247 12 1 6.6573 1.7798 -0.5037 13 8 1.6512 2.0933 1.2385 14 6 0.4681 2.7270 1.2487 15 8 -0.2199 2.7380 0.2555 16 6 -0.0019 3.4257 2.4985 17 1 -0.0862 2.7001 3.3074 18 6 -1.3698 4.0626 2.2413 19 6 -1.7014 4.9900 3.4166 20 6 -0.7322 6.1727 3.3957 21 1 -0.9565 6.8071 2.5382 22 6 -0.9006 6.9872 4.6798 23 9 -0.0321 8.0837 4.6538 24 9 -2.2208 7.4402 4.7750 25 9 -0.6028 6.1826 5.7849 26 7 0.6442 5.7027 3.3003 27 6 0.9913 4.4853 2.8811 28 8 2.1722 4.2195 2.8046 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.8376 0.3836 -3.1387 35 1 -2.1283 3.2838 2.1630 36 1 -1.3388 4.6388 1.3165 37 1 -1.5930 4.4449 4.3543 38 1 -2.7242 5.3536 3.3183 39 1 1.3523 6.3152 3.5539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249287024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:19 Heat of formation + Delta-G solvation = -285.564978 kcal Electronic energy + Delta-G solvation = -28745.059706 eV Core-core repulsion = 24044.466499 eV Total energy + Delta-G solvation = -4700.593206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.55389 -48.06492 -48.00153 -40.96829 -39.24549 -37.04600 -35.89192 -33.59088 -33.29270 -31.46580 -30.92208 -27.81320 -26.93755 -23.93006 -23.24380 -23.02495 -21.43981 -19.89523 -19.44644 -18.89797 -18.75352 -18.50598 -17.42003 -17.10827 -16.50714 -16.21659 -15.62584 -15.17859 -14.93303 -14.80181 -14.65183 -14.46671 -14.38214 -14.30601 -14.19274 -14.13165 -14.02955 -13.22453 -12.98698 -12.82909 -12.55979 -12.04825 -11.85398 -11.79108 -11.54759 -11.38350 -11.19829 -11.16830 -10.93242 -10.63009 -10.22374 -9.97036 -9.87780 -9.66763 -9.59074 -9.36901 -8.79508 -8.41475 -6.15365 -4.17383 2.07140 2.33985 2.60338 2.94621 3.20904 3.30049 3.34883 3.38831 3.44754 3.58584 3.76548 4.14725 4.21715 4.33392 4.37625 4.54229 4.79105 4.98411 5.17673 5.18223 5.25959 5.58772 5.68331 5.88466 6.14868 6.21632 6.36282 6.38279 6.79573 6.81983 6.92765 7.11313 7.17415 7.58876 7.71773 7.88976 7.97458 8.17114 8.61491 8.96029 9.46067 10.93852 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.003345 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.564851 B = 8367.935831 C = 9214.334543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.218 3.782 4 H 0.053 0.947 5 C -0.519 4.519 6 H 0.071 0.929 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.907 3.093 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.271 1.271 13 O -0.330 6.330 14 C 0.468 3.532 15 O -0.509 6.509 16 C -0.104 4.104 17 H 0.139 0.861 18 C -0.104 4.104 19 C -0.136 4.136 20 C 0.104 3.896 21 H 0.122 0.878 22 C 0.442 3.558 23 F -0.180 7.180 24 F -0.175 7.175 25 F -0.175 7.175 26 N -0.718 5.718 27 C 0.530 3.470 28 O -0.489 6.489 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 10.934 13.358 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.071 0.929 5 C -0.557 4.557 6 H 0.089 0.911 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.734 3.266 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.196 1.196 13 O -0.245 6.245 14 C 0.309 3.691 15 O -0.399 6.399 16 C -0.127 4.127 17 H 0.156 0.844 18 C -0.141 4.141 19 C -0.174 4.174 20 C -0.004 4.004 21 H 0.140 0.860 22 C 0.387 3.613 23 F -0.161 7.161 24 F -0.156 7.156 25 F -0.156 7.156 26 N -0.375 5.375 27 C 0.315 3.685 28 O -0.360 6.360 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -13.036 10.513 12.748 21.047 hybrid contribution 1.039 0.306 0.215 1.105 sum -11.997 10.819 12.963 20.713 Atomic orbital electron populations 1.21864 0.98122 0.99157 1.00885 1.21941 0.92919 0.99453 1.02391 1.20726 0.95331 0.88398 0.78943 0.92917 1.21020 0.89554 1.43151 1.01982 0.91101 1.24881 0.99045 0.95254 0.94601 1.69991 1.35951 1.44421 1.02210 0.86365 0.84209 0.78926 0.77147 1.20265 1.21141 1.19613 1.86589 1.32806 1.61295 1.43772 1.22257 0.81497 0.77511 0.87842 1.90631 1.55852 1.58965 1.34494 1.21180 0.95375 0.97353 0.98749 0.84373 1.21540 0.94599 0.99615 0.98366 1.22053 0.99093 0.94739 1.01522 1.22177 0.86025 0.98155 0.94071 0.86032 1.20934 0.74116 0.79013 0.87247 1.93213 1.69885 1.56239 1.96769 1.93209 1.35954 1.89794 1.96648 1.93220 1.92975 1.72920 1.56510 1.45347 1.06704 1.15822 1.69637 1.19541 0.89858 0.81971 0.77092 1.90968 1.17597 1.77691 1.49740 0.94677 0.94842 0.92596 0.89173 0.93548 0.92503 0.88458 0.89074 0.89128 0.87558 0.75430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.56 37.16 0.32 -2.66 16 2 C -0.13 -3.14 5.54 -26.73 -0.15 -3.28 16 3 C 0.22 5.86 2.12 -27.88 -0.06 5.80 16 4 H 0.05 1.57 7.10 -51.93 -0.37 1.20 16 5 C -0.52 -15.01 8.82 -34.44 -0.30 -15.31 16 6 H 0.07 2.09 7.83 -52.49 -0.41 1.68 16 7 C 0.06 1.81 5.16 -17.82 -0.09 1.72 16 8 N -0.89 -25.59 12.16 55.43 0.67 -24.92 16 9 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 O -0.33 -7.99 8.75 -45.27 -0.40 -8.39 16 14 C 0.47 9.34 5.60 36.01 0.20 9.54 16 15 O -0.51 -10.90 12.94 -18.75 -0.24 -11.15 16 16 C -0.10 -1.44 2.86 -93.14 -0.27 -1.71 16 17 H 0.14 1.59 8.14 -51.93 -0.42 1.17 16 18 C -0.10 -1.00 4.78 -26.52 -0.13 -1.12 16 19 C -0.14 -0.88 5.03 -26.60 -0.13 -1.01 16 20 C 0.10 0.76 3.04 -68.38 -0.21 0.56 16 21 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 22 C 0.44 3.38 2.79 37.16 0.10 3.48 16 23 F -0.18 -1.52 16.87 2.25 0.04 -1.49 16 24 F -0.17 -1.28 16.92 2.25 0.04 -1.24 16 25 F -0.17 -1.57 16.60 2.25 0.04 -1.53 16 26 N -0.72 -7.63 5.04 -54.85 -0.28 -7.90 16 27 C 0.53 7.89 7.28 -11.87 -0.09 7.80 16 28 O -0.49 -9.84 16.41 -11.80 -0.19 -10.03 16 29 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 31 H 0.05 1.23 7.78 -51.93 -0.40 0.82 16 32 H 0.09 2.37 6.81 -51.93 -0.35 2.01 16 33 H 0.05 1.09 8.14 -51.92 -0.42 0.66 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.97 7.73 -51.93 -0.40 0.57 16 37 H 0.09 0.55 7.58 -51.93 -0.39 0.16 16 38 H 0.11 0.44 8.03 -51.93 -0.42 0.02 16 39 H 0.41 4.11 8.27 -40.82 -0.34 3.78 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -33.70 334.35 -5.76 -39.45 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.65 Total: 1.70 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.80 Total: 3.80 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.40 Total: -32.82 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.83 Total: -29.56 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.70 -5.76 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249287024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.110 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds