Wall clock time and date at job start Tue Mar 31 2020 14:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 H 1.09001 * 109.46759 * 305.33642 * 3 2 1 5 5 C 1.50697 * 109.47324 * 185.34132 * 3 2 1 6 6 H 1.08004 * 120.00014 * 245.44792 * 5 3 2 7 7 C 1.37879 * 120.00304 * 65.45148 * 5 3 2 8 8 N 1.31509 * 119.99919 * 9.49907 * 7 5 3 9 9 Si 1.86801 * 120.00054 * 189.50642 * 7 5 3 10 10 H 1.48497 * 109.47403 * 84.98959 * 9 7 5 11 11 H 1.48502 * 109.47199 * 204.99316 * 9 7 5 12 12 H 1.48501 * 109.46935 * 324.98894 * 9 7 5 13 13 O 1.45194 * 109.47213 * 65.33586 * 3 2 1 14 14 C 1.34230 * 117.00097 * 269.99897 * 13 3 2 15 15 O 1.20825 * 119.99928 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00072 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.39991 * 60.17689 * 16 14 13 18 18 C 1.53063 * 109.40333 * 180.02562 * 16 14 13 19 19 C 1.53350 * 108.42346 * 71.14483 * 18 16 14 20 20 C 1.52929 * 108.67121 * 67.53277 * 19 18 16 21 21 H 1.08999 * 109.30063 * 69.35530 * 20 19 18 22 22 C 1.53003 * 109.29839 * 188.93812 * 20 19 18 23 23 F 1.39892 * 109.47374 * 59.99677 * 22 20 19 24 24 F 1.39907 * 109.46672 * 299.99622 * 22 20 19 25 25 F 1.39895 * 109.46967 * 180.02562 * 22 20 19 26 26 N 1.45749 * 110.48686 * 309.24352 * 20 19 18 27 27 C 1.33353 * 124.10708 * 19.08457 * 26 20 19 28 28 O 1.21281 * 118.24911 * 177.75456 * 27 26 20 29 29 H 1.08994 * 109.47376 * 300.00498 * 1 2 3 30 30 H 1.09004 * 109.47028 * 60.00357 * 1 2 3 31 31 H 1.08998 * 109.47096 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47397 * 239.99491 * 2 1 3 33 33 H 1.09001 * 109.47291 * 120.00097 * 2 1 3 34 34 H 0.97001 * 120.00282 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.67902 * 311.41478 * 18 16 14 36 36 H 1.09005 * 109.67835 * 190.87923 * 18 16 14 37 37 H 1.08993 * 109.60772 * 307.78044 * 19 18 16 38 38 H 1.09000 * 109.60562 * 187.28704 * 19 18 16 39 39 H 0.97002 * 117.95147 * 199.07257 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9831 -0.8384 5 6 3.5412 1.4445 -0.1323 6 1 4.1543 1.8073 0.6795 7 6 4.1320 0.9833 -1.2895 8 7 3.3929 0.7179 -2.3445 9 14 5.9821 0.7351 -1.3589 10 1 6.3223 -0.6059 -0.8196 11 1 6.4423 0.8336 -2.7674 12 1 6.6526 1.7807 -0.5450 13 8 1.6628 2.0892 1.2440 14 6 0.4798 2.7230 1.2671 15 8 -0.2176 2.7365 0.2805 16 6 0.0210 3.4168 2.5237 17 1 0.7387 4.1922 2.7919 18 6 -1.3495 4.0538 2.2815 19 6 -2.3929 2.9346 2.1797 20 6 -2.5310 2.2679 3.5490 21 1 -3.0075 2.9620 4.2413 22 6 -3.3960 1.0129 3.4155 23 9 -2.7924 0.1235 2.5203 24 9 -4.6621 1.3681 2.9378 25 9 -3.5252 0.4004 4.6666 26 7 -1.2213 1.8969 4.0701 27 6 -0.0708 2.4155 3.6393 28 8 0.9563 2.0597 4.1771 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8085 0.3938 -3.1588 35 1 -1.3305 4.6233 1.3523 36 1 -1.5994 4.7140 3.1121 37 1 -2.0683 2.1976 1.4452 38 1 -3.3525 3.3554 1.8794 39 1 -1.1842 1.2312 4.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249287028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:22 Heat of formation + Delta-G solvation = -286.049475 kcal Electronic energy + Delta-G solvation = -29671.798421 eV Core-core repulsion = 24971.184205 eV Total energy + Delta-G solvation = -4700.614216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.41575 -47.95074 -47.83248 -41.08955 -39.25428 -37.08005 -35.89837 -33.57122 -33.31302 -31.50952 -30.89650 -27.71103 -26.93693 -23.98442 -23.16827 -23.01692 -21.72736 -20.02430 -19.21191 -18.82961 -18.60817 -18.43175 -17.53104 -16.85814 -16.52056 -16.39861 -15.57638 -15.24678 -14.85630 -14.71230 -14.59783 -14.41498 -14.32352 -14.17718 -14.02330 -13.96691 -13.89519 -13.34854 -13.08145 -12.86433 -12.52425 -12.08109 -11.76581 -11.70848 -11.52850 -11.44269 -11.20943 -11.15774 -10.96567 -10.65759 -10.27378 -10.06832 -9.87921 -9.68701 -9.59826 -9.41054 -8.85872 -8.46117 -6.20240 -4.23406 2.07168 2.41260 2.58169 2.88638 3.27063 3.31743 3.33473 3.36459 3.49598 3.64736 3.84982 4.23072 4.29977 4.32896 4.37660 4.57433 4.74351 5.13067 5.18723 5.32198 5.39451 5.62910 5.73808 5.86616 6.15616 6.22662 6.35154 6.37165 6.79333 6.82016 6.89612 7.08895 7.13587 7.55232 7.66158 7.82914 7.90817 8.10963 8.53247 8.88237 9.40480 10.88792 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.003924 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.166340 B = 7133.677252 C = 7425.873974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.056 0.944 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.907 3.093 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.339 6.339 14 C 0.465 3.535 15 O -0.502 6.502 16 C -0.107 4.107 17 H 0.143 0.857 18 C -0.102 4.102 19 C -0.146 4.146 20 C 0.104 3.896 21 H 0.122 0.878 22 C 0.440 3.560 23 F -0.169 7.169 24 F -0.175 7.175 25 F -0.182 7.182 26 N -0.716 5.716 27 C 0.539 3.461 28 O -0.505 6.505 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.727 5.212 11.767 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 O -0.254 6.254 14 C 0.306 3.694 15 O -0.392 6.392 16 C -0.129 4.129 17 H 0.161 0.839 18 C -0.139 4.139 19 C -0.183 4.183 20 C -0.004 4.004 21 H 0.139 0.861 22 C 0.385 3.615 23 F -0.150 7.150 24 F -0.156 7.156 25 F -0.163 7.163 26 N -0.372 5.372 27 C 0.324 3.676 28 O -0.378 6.378 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -15.299 5.062 11.352 19.712 hybrid contribution 0.591 -0.801 0.053 0.997 sum -14.708 4.261 11.405 19.094 Atomic orbital electron populations 1.21843 0.98051 0.99243 1.00685 1.21928 0.92965 0.99409 1.02350 1.20754 0.95466 0.88607 0.78458 0.92671 1.20994 0.89520 1.43917 1.01774 0.91214 1.24877 0.99095 0.95084 0.94595 1.69981 1.35954 1.44150 1.02215 0.86359 0.84049 0.79003 0.77184 1.20225 1.21080 1.19607 1.86578 1.33250 1.61537 1.44010 1.22347 0.81605 0.77363 0.88109 1.90621 1.55170 1.57999 1.35451 1.21247 1.01214 0.98209 0.92228 0.83950 1.21544 0.90342 0.97166 1.04860 1.22161 1.02472 1.00217 0.93457 1.22228 0.84690 0.92344 1.01147 0.86092 1.20906 0.79808 0.86660 0.74120 1.93272 1.82872 1.70703 1.68165 1.93206 1.42209 1.91799 1.88382 1.93195 1.95999 1.85152 1.41998 1.45327 1.04492 1.45915 1.41486 1.19464 0.82650 0.81863 0.83581 1.90859 1.32180 1.59305 1.55411 0.94998 0.92604 0.94701 0.89144 0.93619 0.92397 0.87958 0.89574 0.87846 0.87802 0.75466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.57 37.15 0.32 -2.72 16 2 C -0.13 -3.18 5.54 -26.73 -0.15 -3.33 16 3 C 0.22 5.81 2.11 -27.88 -0.06 5.75 16 4 H 0.06 1.60 7.10 -51.93 -0.37 1.23 16 5 C -0.52 -14.82 8.82 -34.44 -0.30 -15.12 16 6 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 7 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 8 N -0.89 -25.17 12.16 55.43 0.67 -24.50 16 9 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 O -0.34 -8.09 9.66 -39.26 -0.38 -8.47 16 14 C 0.46 9.05 5.34 36.00 0.19 9.25 16 15 O -0.50 -10.28 11.50 -18.75 -0.22 -10.50 16 16 C -0.11 -1.48 2.94 -93.14 -0.27 -1.76 16 17 H 0.14 1.75 8.14 -51.93 -0.42 1.32 16 18 C -0.10 -0.97 5.14 -26.52 -0.14 -1.11 16 19 C -0.15 -1.40 4.88 -26.59 -0.13 -1.53 16 20 C 0.10 0.89 3.04 -68.37 -0.21 0.68 16 21 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 22 C 0.44 4.36 2.79 37.16 0.10 4.47 16 23 F -0.17 -2.20 16.57 2.25 0.04 -2.17 16 24 F -0.17 -1.65 16.96 2.25 0.04 -1.61 16 25 F -0.18 -1.77 16.83 2.25 0.04 -1.73 16 26 N -0.72 -7.99 5.06 -54.85 -0.28 -8.26 16 27 C 0.54 7.92 6.87 -11.87 -0.08 7.84 16 28 O -0.50 -9.51 17.73 5.56 0.10 -9.41 16 29 H 0.03 0.66 6.05 -51.93 -0.31 0.34 16 30 H 0.05 1.24 7.82 -51.93 -0.41 0.83 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 2.40 6.80 -51.93 -0.35 2.05 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.10 1.01 7.71 -51.93 -0.40 0.61 16 36 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 37 H 0.10 1.37 5.79 -51.93 -0.30 1.07 16 38 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 39 H 0.41 4.24 8.24 -40.82 -0.34 3.91 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -32.65 332.93 -5.37 -38.02 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.56 Total: 3.22 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.82 Total: 4.15 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.40 Total: -32.76 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.50 Total: -28.38 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.11 Total: -5.51 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.65 -5.37 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249287028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -248.034 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds