Wall clock time and date at job start Tue Mar 31 2020 14:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47389 * 2 1 4 4 H 1.09005 * 109.46802 * 304.37621 * 3 2 1 5 5 O 1.42893 * 109.47646 * 64.37482 * 3 2 1 6 6 C 1.35923 * 117.00151 * 261.55355 * 5 3 2 7 7 C 1.38702 * 120.06251 * 1.67782 * 6 5 3 8 8 C 1.38152 * 119.95936 * 179.74627 * 7 6 5 9 9 C 1.38276 * 120.07456 * 0.52741 * 8 7 6 10 10 C 1.38244 * 120.12044 * 359.72350 * 9 8 7 11 11 C 1.38253 * 120.04099 * 0.02745 * 10 9 8 12 12 Cl 1.73605 * 120.03641 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47526 * 184.38010 * 3 2 1 14 14 O 1.21290 * 119.99873 * 257.13685 * 13 3 2 15 15 N 1.34776 * 120.00049 * 77.13208 * 13 3 2 16 16 C 1.37094 * 119.99736 * 176.38601 * 15 13 3 17 17 H 1.08007 * 119.99752 * 222.74047 * 16 15 13 18 18 C 1.38945 * 120.00369 * 42.74806 * 16 15 13 19 19 N 1.31410 * 120.00122 * 20.16641 * 18 16 15 20 20 Si 1.86797 * 120.00103 * 200.17711 * 18 16 15 21 21 H 1.48509 * 109.47315 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.47023 * 299.99402 * 20 18 16 23 23 H 1.48499 * 109.47720 * 59.99494 * 20 18 16 24 24 C 1.46498 * 120.00241 * 356.38896 * 15 13 3 25 25 C 1.52999 * 117.50143 * 193.53436 * 24 15 13 26 26 C 1.52997 * 117.50208 * 124.90823 * 24 15 13 27 27 H 1.09000 * 109.47371 * 300.00073 * 1 2 3 28 28 H 1.08997 * 109.47067 * 60.00407 * 1 2 3 29 29 H 1.09001 * 109.47429 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47260 * 239.99429 * 2 1 3 31 31 H 1.09002 * 109.46937 * 120.00057 * 2 1 3 32 32 H 1.07998 * 120.02131 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.96375 * 180.25231 * 8 7 6 34 34 H 1.08003 * 119.93718 * 179.74414 * 9 8 7 35 35 H 1.08003 * 119.97593 * 179.97438 * 10 9 8 36 36 H 0.97001 * 120.00214 * 174.96517 * 19 18 16 37 37 H 1.09003 * 115.55114 * 339.24062 * 24 15 13 38 38 H 1.09002 * 117.49648 * 359.97438 * 25 24 15 39 39 H 1.08996 * 117.49935 * 145.01624 * 25 24 15 40 40 H 1.09000 * 117.50200 * 214.97641 * 26 24 15 41 41 H 1.08995 * 117.49718 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6140 1.9784 -0.8482 5 8 1.6495 2.0858 1.2147 6 6 0.5427 2.8733 1.1677 7 6 -0.1731 2.9961 -0.0141 8 6 -1.3008 3.7929 -0.0580 9 6 -1.7105 4.4768 1.0718 10 6 -0.9965 4.3609 2.2499 11 6 0.1298 3.5608 2.3008 12 17 1.0259 3.4148 3.7805 13 6 3.5431 1.4438 -0.1085 14 8 4.2219 1.6521 0.8748 15 7 4.1331 1.2136 -1.2982 16 6 5.4972 1.2880 -1.4126 17 1 5.9416 1.7773 -2.2668 18 6 6.3082 0.7338 -0.4298 19 7 5.8265 -0.1821 0.3800 20 14 8.0829 1.2911 -0.2596 21 1 8.7287 0.5532 0.8558 22 1 8.8118 1.0151 -1.5236 23 1 8.1193 2.7481 0.0248 24 6 3.3167 0.8838 -2.4691 25 6 4.0373 0.3273 -3.6987 26 6 3.4856 1.7543 -3.7159 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.1488 2.4661 -0.8983 33 1 -1.8605 3.8853 -0.9770 34 1 -2.5900 5.1025 1.0338 35 1 -1.3184 4.8965 3.1308 36 1 6.4108 -0.6215 1.0176 37 1 2.3190 0.5011 -2.2540 38 1 5.1189 0.2069 -3.6366 39 1 3.5138 -0.4219 -4.2926 40 1 2.5992 1.9439 -4.3213 41 1 4.2038 2.5726 -3.6649 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267124386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:35 Heat of formation + Delta-G solvation = -21.642245 kcal Electronic energy + Delta-G solvation = -26027.644494 eV Core-core repulsion = 22321.061741 eV Total energy + Delta-G solvation = -3706.582753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71131 -40.26317 -38.58011 -37.60744 -37.27990 -34.88435 -34.61038 -32.78316 -31.71711 -30.95165 -28.83156 -26.51292 -24.25957 -23.44895 -23.32049 -22.97735 -22.17518 -21.19244 -19.56311 -18.53674 -17.86508 -17.21234 -16.90242 -16.76102 -16.66257 -15.95266 -15.64921 -15.47002 -15.08383 -14.85850 -14.74035 -14.69213 -14.22483 -13.87091 -13.42182 -13.24950 -13.10918 -12.84939 -12.81578 -12.76954 -12.57737 -12.42459 -12.26452 -12.22322 -12.10242 -12.00825 -11.80708 -11.71763 -11.45546 -11.17356 -10.73424 -9.94598 -9.82326 -9.11232 -8.98114 -8.21827 -5.99373 0.19488 0.37956 1.26517 1.32731 1.42928 1.45242 1.95629 2.14113 2.39339 2.69693 3.08488 3.13827 3.34652 3.61508 3.78096 3.88510 3.93247 4.03519 4.07810 4.19259 4.27393 4.35813 4.37325 4.41008 4.51749 4.52574 4.79616 4.82966 4.92178 4.96218 5.03790 5.10935 5.18909 5.27602 5.31519 5.35310 5.46460 5.48237 5.51772 5.77467 6.14559 6.36405 6.98301 7.17874 7.63453 8.29132 8.85537 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.004784 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.664630 B = 5851.127774 C = 6960.747899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.084 3.916 4 H 0.114 0.886 5 O -0.303 6.303 6 C 0.116 3.884 7 C -0.208 4.208 8 C -0.064 4.064 9 C -0.144 4.144 10 C -0.076 4.076 11 C -0.101 4.101 12 Cl -0.085 7.085 13 C 0.458 3.542 14 O -0.571 6.571 15 N -0.432 5.432 16 C -0.359 4.359 17 H 0.083 0.917 18 C 0.024 3.976 19 N -0.862 5.862 20 Si 0.965 3.035 21 H -0.290 1.290 22 H -0.252 1.252 23 H -0.285 1.285 24 C 0.031 3.969 25 C -0.170 4.170 26 C -0.179 4.179 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.258 0.742 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 5.361 -6.259 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.025 3.975 4 H 0.131 0.869 5 O -0.216 6.216 6 C 0.070 3.930 7 C -0.227 4.227 8 C -0.082 4.082 9 C -0.162 4.162 10 C -0.094 4.094 11 C -0.128 4.128 12 Cl -0.056 7.056 13 C 0.246 3.754 14 O -0.451 6.451 15 N -0.153 5.153 16 C -0.487 4.487 17 H 0.101 0.899 18 C -0.184 4.184 19 N -0.497 5.497 20 Si 0.790 3.210 21 H -0.216 1.216 22 H -0.176 1.176 23 H -0.211 1.211 24 C -0.074 4.074 25 C -0.208 4.208 26 C -0.217 4.217 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.168 0.832 33 H 0.187 0.813 34 H 0.187 0.813 35 H 0.173 0.827 36 H 0.067 0.933 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.528 5.313 -5.251 19.977 hybrid contribution 1.813 -0.190 0.818 1.998 sum -16.715 5.123 -4.433 18.036 Atomic orbital electron populations 1.21855 0.92002 1.03370 1.02557 1.21910 0.98606 0.93373 1.02861 1.22408 0.92841 0.95367 0.86897 0.86876 1.86298 1.41510 1.59047 1.34731 1.19280 0.87658 0.91547 0.94564 1.21564 0.99034 1.05597 0.96489 1.21486 0.93903 0.92657 1.00119 1.21450 1.01646 1.01710 0.91351 1.21222 0.91478 0.95830 1.00871 1.20609 0.99214 1.06084 0.86874 1.98358 1.75692 1.97410 1.34159 1.20466 0.89026 0.81545 0.84388 1.90531 1.66081 1.51042 1.37406 1.42854 1.04971 1.61205 1.06312 1.19051 0.80977 1.38442 1.10189 0.89936 1.26006 1.02653 0.93840 0.95861 1.69948 1.37149 1.22020 1.20563 0.85450 0.79302 0.77953 0.78256 1.21576 1.17572 1.21099 1.22278 0.96696 1.05388 0.82996 1.23132 1.00770 0.97222 0.99674 1.23337 1.03888 0.93847 1.00666 0.93648 0.89705 0.90582 0.89163 0.93961 0.83184 0.81327 0.81325 0.82740 0.93306 0.84643 0.90371 0.86126 0.85163 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.52 71.98 0.61 -2.80 16 2 C -0.13 -4.46 5.27 30.59 0.16 -4.30 16 3 C 0.08 3.35 1.71 29.85 0.05 3.40 16 4 H 0.11 3.66 4.58 -2.38 -0.01 3.65 16 5 O -0.30 -12.88 8.63 -74.23 -0.64 -13.52 16 6 C 0.12 3.84 5.51 22.52 0.12 3.96 16 7 C -0.21 -4.99 7.43 22.36 0.17 -4.83 16 8 C -0.06 -1.06 10.04 22.26 0.22 -0.83 16 9 C -0.14 -2.29 10.04 22.28 0.22 -2.07 16 10 C -0.08 -1.65 9.83 22.27 0.22 -1.43 16 11 C -0.10 -3.12 6.33 22.41 0.14 -2.98 16 12 Cl -0.08 -2.97 28.51 -2.72 -0.08 -3.05 16 13 C 0.46 24.26 6.35 87.66 0.56 24.82 16 14 O -0.57 -37.05 14.07 15.39 0.22 -36.83 16 15 N -0.43 -21.50 2.87 -613.14 -1.76 -23.25 16 16 C -0.36 -19.87 7.69 84.04 0.65 -19.22 16 17 H 0.08 4.37 7.49 -2.91 -0.02 4.35 16 18 C 0.02 1.37 4.32 84.93 0.37 1.74 16 19 N -0.86 -53.80 11.62 21.66 0.25 -53.55 16 20 Si 0.97 46.95 29.60 68.60 2.03 48.98 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.25 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.28 -14.19 7.11 99.48 0.71 -13.49 16 24 C 0.03 1.12 5.47 44.99 0.25 1.37 16 25 C -0.17 -5.49 9.84 30.59 0.30 -5.19 16 26 C -0.18 -5.25 10.13 30.59 0.31 -4.94 16 27 H 0.04 1.22 6.55 -2.39 -0.02 1.20 16 28 H 0.08 1.53 6.88 -2.39 -0.02 1.51 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 2.96 6.03 -2.38 -0.01 2.95 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.15 3.16 4.53 -2.91 -0.01 3.15 16 33 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.26 15.67 8.32 -92.71 -0.77 14.90 16 37 H 0.14 4.03 5.02 -2.39 -0.01 4.02 16 38 H 0.08 3.03 7.03 -2.39 -0.02 3.01 16 39 H 0.12 2.98 8.14 -2.39 -0.02 2.97 16 40 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.07 2.48 8.02 -2.39 -0.02 2.46 16 Total: -1.00 -81.66 346.28 5.43 -76.22 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.06 Total: 18.31 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.35 Total: -13.30 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -1.51 Total: -76.81 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.42 Total: -50.35 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -0.08 Total: -3.05 kcal Total: -81.66 5.43 -76.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267124386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.580 kcal (2) G-P(sol) polarization free energy of solvation -81.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds