Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47028 * 2 1 4 4 H 1.09000 * 109.47079 * 54.99816 * 3 2 1 5 5 O 1.42896 * 109.47057 * 295.00107 * 3 2 1 6 6 C 1.35925 * 117.00625 * 94.54053 * 5 3 2 7 7 C 1.38718 * 120.05245 * 1.76883 * 6 5 3 8 8 C 1.38154 * 119.95364 * 179.74442 * 7 6 5 9 9 C 1.38281 * 120.07569 * 0.53414 * 8 7 6 10 10 C 1.38249 * 120.12070 * 359.71936 * 9 8 7 11 11 C 1.38257 * 120.04294 * 0.02562 * 10 9 8 12 12 Cl 1.73596 * 120.04236 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47217 * 174.99736 * 3 2 1 14 14 O 1.21290 * 119.99835 * 119.99955 * 13 3 2 15 15 N 1.34771 * 119.99856 * 300.00474 * 13 3 2 16 16 C 1.37106 * 119.99916 * 179.97438 * 15 13 3 17 17 H 1.07994 * 119.99985 * 224.38635 * 16 15 13 18 18 C 1.38949 * 119.99861 * 44.38290 * 16 15 13 19 19 N 1.31416 * 119.99781 * 18.32332 * 18 16 15 20 20 Si 1.86798 * 120.00116 * 198.32179 * 18 16 15 21 21 H 1.48499 * 109.47378 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47360 * 300.00452 * 20 18 16 23 23 H 1.48502 * 109.46816 * 60.00142 * 20 18 16 24 24 C 1.46497 * 120.00404 * 359.97438 * 15 13 3 25 25 C 1.53003 * 117.50169 * 188.09995 * 24 15 13 26 26 C 1.53003 * 117.49833 * 119.47374 * 24 15 13 27 27 H 1.09006 * 109.47251 * 60.00141 * 1 2 3 28 28 H 1.08997 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47147 * 299.99992 * 1 2 3 30 30 H 1.09000 * 109.47147 * 240.00008 * 2 1 3 31 31 H 1.08996 * 109.47231 * 119.99821 * 2 1 3 32 32 H 1.07992 * 120.02380 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.96264 * 180.25314 * 8 7 6 34 34 H 1.08002 * 119.94178 * 179.74113 * 9 8 7 35 35 H 1.08001 * 119.98032 * 180.02562 * 10 9 8 36 36 H 0.97002 * 119.99988 * 174.96677 * 19 18 16 37 37 H 1.09001 * 115.54746 * 333.81233 * 24 15 13 38 38 H 1.08996 * 117.49408 * 359.97438 * 25 24 15 39 39 H 1.08997 * 117.49999 * 145.02561 * 25 24 15 40 40 H 1.09000 * 117.49868 * 214.97780 * 26 24 15 41 41 H 1.08995 * 117.49718 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5100 2.8027 -1.2092 7 6 -0.2218 2.9240 -0.0370 8 6 -1.3896 3.6621 -0.0261 9 6 -1.8356 4.2708 -1.1848 10 6 -1.1115 4.1476 -2.3561 11 6 0.0606 3.4145 -2.3714 12 17 0.9694 3.2593 -3.8423 13 6 3.5419 1.4444 0.1239 14 8 4.2217 1.9437 -0.7477 15 7 4.1297 0.8912 1.2032 16 6 5.4961 0.8924 1.3156 17 1 6.0122 -0.0001 1.6370 18 6 6.2168 2.0420 1.0161 19 7 5.6097 3.2069 0.9781 20 14 8.0486 1.9316 0.6674 21 1 8.5798 3.2876 0.3768 22 1 8.7452 1.3701 1.8526 23 1 8.2771 1.0493 -0.5050 24 6 3.3086 0.2885 2.2562 25 6 4.0165 -0.1515 3.5392 26 6 3.5120 -1.2000 2.5456 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.1235 2.4456 0.8675 33 1 -1.9573 3.7600 0.8875 34 1 -2.7510 4.8438 -1.1748 35 1 -1.4617 4.6243 -3.2597 36 1 6.1242 4.0177 0.8414 37 1 2.2979 0.6859 2.3495 38 1 5.0932 0.0070 3.5996 39 1 3.4716 -0.0436 4.4770 40 1 2.6352 -1.7819 2.8299 41 1 4.2564 -1.7310 1.9523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267124389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = -2.330599 kcal Electronic energy + Delta-G solvation = -26063.253568 eV Core-core repulsion = 22357.508231 eV Total energy + Delta-G solvation = -3705.745337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41220 -38.77472 -37.27626 -36.10794 -35.94354 -33.42599 -32.79480 -30.91301 -30.67586 -29.87855 -27.31222 -24.68902 -23.17917 -22.33776 -21.81082 -21.76047 -20.69518 -19.51142 -18.32898 -16.79728 -16.17609 -16.10141 -15.66137 -15.50532 -14.85925 -14.48742 -14.27024 -13.96372 -13.69658 -13.58014 -13.44254 -13.12565 -12.92259 -12.33438 -12.13824 -11.99798 -11.79350 -11.42327 -11.35174 -11.23499 -11.08616 -10.96814 -10.87332 -10.82254 -10.66352 -10.53425 -10.26975 -10.12077 -9.95823 -9.76814 -8.81048 -8.72992 -8.13800 -7.85237 -7.08806 -6.15375 -3.92395 1.20067 1.42436 2.42221 3.25982 3.33252 3.37622 3.41253 3.69320 3.96018 4.24859 4.64616 4.72598 4.82758 4.91256 5.00874 5.11003 5.22781 5.27010 5.28464 5.40325 5.45310 5.53438 5.59665 5.66287 5.71358 5.75512 5.89238 5.99688 6.10712 6.14671 6.17163 6.23118 6.27869 6.36460 6.43882 6.51090 6.64902 6.70760 6.88664 7.54845 7.61797 8.22161 8.97688 9.09509 9.57407 10.19114 10.93617 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.004793 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.517992 B = 5840.464179 C = 6987.048258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.068 3.932 4 H 0.085 0.915 5 O -0.265 6.265 6 C 0.158 3.842 7 C -0.205 4.205 8 C -0.075 4.075 9 C -0.160 4.160 10 C -0.075 4.075 11 C -0.076 4.076 12 Cl -0.058 7.058 13 C 0.485 3.515 14 O -0.506 6.506 15 N -0.421 5.421 16 C -0.350 4.350 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.832 5.832 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.277 1.277 23 H -0.273 1.273 24 C 0.069 3.931 25 C -0.173 4.173 26 C -0.207 4.207 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.266 0.734 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.215 -2.212 0.660 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.008 3.992 4 H 0.102 0.898 5 O -0.175 6.175 6 C 0.110 3.890 7 C -0.224 4.224 8 C -0.093 4.093 9 C -0.179 4.179 10 C -0.093 4.093 11 C -0.104 4.104 12 Cl -0.029 7.029 13 C 0.270 3.730 14 O -0.381 6.381 15 N -0.143 5.143 16 C -0.477 4.477 17 H 0.097 0.903 18 C -0.137 4.137 19 N -0.464 5.464 20 Si 0.742 3.258 21 H -0.211 1.211 22 H -0.203 1.203 23 H -0.198 1.198 24 C -0.037 4.037 25 C -0.211 4.211 26 C -0.246 4.246 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.589 -1.771 -0.228 14.698 hybrid contribution 0.808 0.089 0.102 0.819 sum -13.781 -1.682 -0.126 13.884 Atomic orbital electron populations 1.21953 0.95665 1.01801 1.01733 1.22246 0.95972 0.95458 1.05038 1.22598 0.97349 0.93365 0.85843 0.89759 1.86329 1.35298 1.61032 1.34890 1.18865 0.86686 0.90955 0.92527 1.21381 0.97880 1.05457 0.97681 1.20983 0.95090 0.94977 0.98264 1.20911 1.01211 1.03321 0.92421 1.20854 0.92364 0.96917 0.99202 1.20195 0.96710 1.06071 0.87388 1.98368 1.74227 1.96984 1.33315 1.19334 0.86371 0.83895 0.83381 1.90584 1.63826 1.43973 1.39739 1.42592 1.04977 1.53144 1.13626 1.18787 0.79463 0.97451 1.51949 0.90260 1.25267 0.99230 0.94546 0.94673 1.69804 1.36707 0.97727 1.42202 0.86242 0.83241 0.77448 0.78915 1.21141 1.20313 1.19848 1.21760 0.95348 0.93838 0.92729 1.23116 1.02497 1.02830 0.92611 1.23355 1.03204 0.93236 1.04825 0.92613 0.92410 0.92681 0.90584 0.88289 0.84253 0.85471 0.85407 0.84770 0.92359 0.88082 0.87298 0.89767 0.89663 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.45 37.16 0.31 -1.65 16 2 C -0.15 -2.39 5.27 -26.73 -0.14 -2.53 16 3 C 0.07 1.35 1.79 -27.88 -0.05 1.30 16 4 H 0.08 1.53 4.80 -51.93 -0.25 1.28 16 5 O -0.26 -5.50 8.65 -39.41 -0.34 -5.84 16 6 C 0.16 2.74 5.35 -39.19 -0.21 2.53 16 7 C -0.21 -2.94 7.18 -39.43 -0.28 -3.23 16 8 C -0.07 -0.87 10.04 -39.60 -0.40 -1.27 16 9 C -0.16 -1.77 10.04 -39.56 -0.40 -2.17 16 10 C -0.07 -0.95 9.83 -39.57 -0.39 -1.33 16 11 C -0.08 -1.23 6.33 -39.36 -0.25 -1.48 16 12 Cl -0.06 -0.97 28.50 -51.86 -1.48 -2.45 16 13 C 0.48 12.34 6.45 -10.99 -0.07 12.27 16 14 O -0.51 -15.42 14.27 -14.36 -0.20 -15.62 16 15 N -0.42 -10.20 2.84 -107.73 -0.31 -10.51 16 16 C -0.35 -9.35 7.75 -14.93 -0.12 -9.46 16 17 H 0.08 2.03 7.49 -52.49 -0.39 1.64 16 18 C 0.07 2.07 4.38 -17.47 -0.08 1.99 16 19 N -0.83 -24.64 11.76 55.50 0.65 -23.99 16 20 Si 0.91 21.94 29.59 -169.99 -5.03 16.91 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.07 1.30 4.29 -67.93 -0.29 1.01 16 25 C -0.17 -2.93 9.81 -26.72 -0.26 -3.20 16 26 C -0.21 -3.28 9.34 -26.72 -0.25 -3.53 16 27 H 0.05 0.77 6.29 -51.93 -0.33 0.44 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.61 6.80 -51.93 -0.35 0.26 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.50 4.30 -51.93 -0.22 1.28 16 32 H 0.14 1.88 4.53 -52.49 -0.24 1.64 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.27 7.62 8.32 -40.82 -0.34 7.28 16 37 H 0.10 1.66 6.27 -51.93 -0.33 1.33 16 38 H 0.11 2.09 6.87 -51.93 -0.36 1.73 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -33.44 343.79 -9.38 -42.82 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.98 Total: 4.23 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.87 Total: -10.72 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.35 Total: -34.50 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.55 Total: -21.46 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.48 Total: -2.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.44 -9.38 -42.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267124389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.491 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds