Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47028 * 2 1 4 4 H 1.09000 * 109.47079 * 54.99816 * 3 2 1 5 5 O 1.42896 * 109.47057 * 295.00107 * 3 2 1 6 6 C 1.35925 * 117.00625 * 94.54053 * 5 3 2 7 7 C 1.38718 * 120.05245 * 1.76883 * 6 5 3 8 8 C 1.38154 * 119.95364 * 179.74442 * 7 6 5 9 9 C 1.38281 * 120.07569 * 0.53414 * 8 7 6 10 10 C 1.38249 * 120.12070 * 359.71936 * 9 8 7 11 11 C 1.38257 * 120.04294 * 0.02562 * 10 9 8 12 12 Cl 1.73596 * 120.04236 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47217 * 174.99736 * 3 2 1 14 14 O 1.21290 * 119.99835 * 119.99955 * 13 3 2 15 15 N 1.34771 * 119.99856 * 300.00474 * 13 3 2 16 16 C 1.37106 * 119.99916 * 179.97438 * 15 13 3 17 17 H 1.07994 * 119.99985 * 224.38635 * 16 15 13 18 18 C 1.38949 * 119.99861 * 44.38290 * 16 15 13 19 19 N 1.31416 * 119.99781 * 18.32332 * 18 16 15 20 20 Si 1.86798 * 120.00116 * 198.32179 * 18 16 15 21 21 H 1.48499 * 109.47378 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47360 * 300.00452 * 20 18 16 23 23 H 1.48502 * 109.46816 * 60.00142 * 20 18 16 24 24 C 1.46497 * 120.00404 * 359.97438 * 15 13 3 25 25 C 1.53003 * 117.50169 * 188.09995 * 24 15 13 26 26 C 1.53003 * 117.49833 * 119.47374 * 24 15 13 27 27 H 1.09006 * 109.47251 * 60.00141 * 1 2 3 28 28 H 1.08997 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47147 * 299.99992 * 1 2 3 30 30 H 1.09000 * 109.47147 * 240.00008 * 2 1 3 31 31 H 1.08996 * 109.47231 * 119.99821 * 2 1 3 32 32 H 1.07992 * 120.02380 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.96264 * 180.25314 * 8 7 6 34 34 H 1.08002 * 119.94178 * 179.74113 * 9 8 7 35 35 H 1.08001 * 119.98032 * 180.02562 * 10 9 8 36 36 H 0.97002 * 119.99988 * 174.96677 * 19 18 16 37 37 H 1.09001 * 115.54746 * 333.81233 * 24 15 13 38 38 H 1.08996 * 117.49408 * 359.97438 * 25 24 15 39 39 H 1.08997 * 117.49999 * 145.02561 * 25 24 15 40 40 H 1.09000 * 117.49868 * 214.97780 * 26 24 15 41 41 H 1.08995 * 117.49718 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5100 2.8027 -1.2092 7 6 -0.2218 2.9240 -0.0370 8 6 -1.3896 3.6621 -0.0261 9 6 -1.8356 4.2708 -1.1848 10 6 -1.1115 4.1476 -2.3561 11 6 0.0606 3.4145 -2.3714 12 17 0.9694 3.2593 -3.8423 13 6 3.5419 1.4444 0.1239 14 8 4.2217 1.9437 -0.7477 15 7 4.1297 0.8912 1.2032 16 6 5.4961 0.8924 1.3156 17 1 6.0122 -0.0001 1.6370 18 6 6.2168 2.0420 1.0161 19 7 5.6097 3.2069 0.9781 20 14 8.0486 1.9316 0.6674 21 1 8.5798 3.2876 0.3768 22 1 8.7452 1.3701 1.8526 23 1 8.2771 1.0493 -0.5050 24 6 3.3086 0.2885 2.2562 25 6 4.0165 -0.1515 3.5392 26 6 3.5120 -1.2000 2.5456 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.1235 2.4456 0.8675 33 1 -1.9573 3.7600 0.8875 34 1 -2.7510 4.8438 -1.1748 35 1 -1.4617 4.6243 -3.2597 36 1 6.1242 4.0177 0.8414 37 1 2.2979 0.6859 2.3495 38 1 5.0932 0.0070 3.5996 39 1 3.4716 -0.0436 4.4770 40 1 2.6352 -1.7819 2.8299 41 1 4.2564 -1.7310 1.9523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267124389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = -21.797093 kcal Electronic energy + Delta-G solvation = -26064.097698 eV Core-core repulsion = 22357.508231 eV Total energy + Delta-G solvation = -3706.589467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74216 -40.31247 -38.55913 -37.66073 -37.28915 -34.91938 -34.55317 -32.76017 -31.72344 -30.98374 -28.80712 -26.51084 -24.29193 -23.44755 -23.28049 -23.07517 -22.14249 -21.15706 -19.58722 -18.52144 -17.90374 -17.22890 -16.91451 -16.88114 -16.61077 -15.89783 -15.65300 -15.32533 -15.12364 -15.07448 -14.70038 -14.56028 -14.24844 -13.87017 -13.44237 -13.26427 -13.02094 -12.88062 -12.82709 -12.78607 -12.59192 -12.46101 -12.28367 -12.22315 -12.12195 -12.05401 -11.82667 -11.52624 -11.35783 -11.20030 -10.71645 -9.96935 -9.83507 -9.12195 -8.98449 -8.24330 -6.02893 0.18130 0.37467 1.25195 1.32766 1.43068 1.45541 1.95803 2.15689 2.38267 2.68326 3.07941 3.12757 3.30813 3.62278 3.79104 3.88057 3.93969 4.02025 4.12768 4.17824 4.24837 4.36455 4.40268 4.42972 4.50638 4.53725 4.80921 4.86057 4.92525 5.02002 5.05896 5.11321 5.18784 5.28705 5.29870 5.37167 5.45610 5.46542 5.51828 5.76071 6.14596 6.35206 6.97593 7.16652 7.61177 8.27529 8.84149 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.004793 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.517992 B = 5840.464179 C = 6987.048258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.082 3.918 4 H 0.099 0.901 5 O -0.303 6.303 6 C 0.120 3.880 7 C -0.210 4.210 8 C -0.066 4.066 9 C -0.144 4.144 10 C -0.075 4.075 11 C -0.100 4.100 12 Cl -0.082 7.082 13 C 0.464 3.536 14 O -0.576 6.576 15 N -0.433 5.433 16 C -0.355 4.355 17 H 0.083 0.917 18 C 0.021 3.979 19 N -0.871 5.871 20 Si 0.968 3.032 21 H -0.290 1.290 22 H -0.250 1.250 23 H -0.284 1.284 24 C 0.038 3.962 25 C -0.170 4.170 26 C -0.178 4.178 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.259 0.741 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 -3.013 2.962 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.023 3.977 4 H 0.117 0.883 5 O -0.215 6.215 6 C 0.073 3.927 7 C -0.229 4.229 8 C -0.084 4.084 9 C -0.162 4.162 10 C -0.094 4.094 11 C -0.128 4.128 12 Cl -0.054 7.054 13 C 0.252 3.748 14 O -0.456 6.456 15 N -0.154 5.154 16 C -0.482 4.482 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.506 5.506 20 Si 0.793 3.207 21 H -0.216 1.216 22 H -0.174 1.174 23 H -0.210 1.210 24 C -0.067 4.067 25 C -0.207 4.207 26 C -0.216 4.216 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.163 0.837 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.174 0.826 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.044 -2.617 2.133 18.357 hybrid contribution 1.744 0.323 -0.582 1.867 sum -16.300 -2.294 1.552 16.533 Atomic orbital electron populations 1.21888 0.92579 1.03437 1.02170 1.22194 0.98477 0.92631 1.04380 1.22380 0.93072 0.95808 0.86458 0.88324 1.86260 1.37589 1.62410 1.35241 1.19237 0.86666 0.92429 0.94336 1.21552 0.98616 1.06086 0.96614 1.21471 0.93871 0.93039 1.00030 1.21439 1.01727 1.01899 0.91167 1.21229 0.91091 0.95946 1.01101 1.20580 0.98001 1.07729 0.86452 1.98349 1.75159 1.97205 1.34665 1.20429 0.89026 0.82657 0.82659 1.90522 1.66083 1.46947 1.42095 1.42804 1.04901 1.52798 1.14890 1.19066 0.81400 0.97161 1.50562 0.89924 1.26075 1.03152 0.94452 0.94813 1.69924 1.37842 0.98129 1.44741 0.85401 0.79252 0.76926 0.79090 1.21561 1.17433 1.21018 1.22114 0.96061 0.96081 0.92415 1.23178 1.01163 1.02820 0.93586 1.23385 1.03991 0.91508 1.02755 0.93957 0.90091 0.90431 0.92908 0.87143 0.83657 0.81558 0.81277 0.82580 0.93216 0.85308 0.90177 0.86136 0.85120 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.45 71.98 0.61 -2.66 16 2 C -0.14 -4.33 5.27 30.60 0.16 -4.17 16 3 C 0.08 3.30 1.79 29.85 0.05 3.36 16 4 H 0.10 3.54 4.80 -2.39 -0.01 3.53 16 5 O -0.30 -13.12 8.65 -73.67 -0.64 -13.76 16 6 C 0.12 4.18 5.35 22.52 0.12 4.30 16 7 C -0.21 -5.58 7.18 22.36 0.16 -5.42 16 8 C -0.07 -1.25 10.04 22.26 0.22 -1.03 16 9 C -0.14 -2.55 10.04 22.28 0.22 -2.33 16 10 C -0.08 -1.74 9.83 22.28 0.22 -1.52 16 11 C -0.10 -3.24 6.33 22.41 0.14 -3.10 16 12 Cl -0.08 -2.91 28.50 -2.72 -0.08 -2.99 16 13 C 0.46 24.69 6.45 87.66 0.57 25.25 16 14 O -0.58 -37.49 14.27 15.97 0.23 -37.26 16 15 N -0.43 -21.44 2.84 -613.13 -1.74 -23.18 16 16 C -0.35 -19.53 7.75 84.04 0.65 -18.88 16 17 H 0.08 4.35 7.49 -2.91 -0.02 4.33 16 18 C 0.02 1.25 4.38 84.93 0.37 1.62 16 19 N -0.87 -54.30 11.76 21.66 0.25 -54.04 16 20 Si 0.97 46.73 29.59 68.60 2.03 48.76 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 22 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 24 C 0.04 1.36 4.29 44.99 0.19 1.55 16 25 C -0.17 -5.38 9.81 30.60 0.30 -5.08 16 26 C -0.18 -5.10 9.34 30.60 0.29 -4.81 16 27 H 0.04 1.09 6.29 -2.38 -0.02 1.08 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.41 6.80 -2.39 -0.02 1.39 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 3.10 4.30 -2.39 -0.01 3.09 16 32 H 0.15 3.54 4.53 -2.91 -0.01 3.53 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.26 15.69 8.32 -92.71 -0.77 14.92 16 37 H 0.13 3.86 6.27 -2.39 -0.01 3.84 16 38 H 0.08 3.03 6.87 -2.39 -0.02 3.01 16 39 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -81.31 343.79 5.40 -75.91 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 1.06 Total: 19.47 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.28 Total: -12.91 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -1.49 Total: -77.22 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.41 Total: -51.02 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.08 Total: -2.99 kcal Total: -81.31 5.40 -75.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267124389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.114 kcal (2) G-P(sol) polarization free energy of solvation -81.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds