Wall clock time and date at job start Tue Mar 31 2020 14:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47399 * 281.93194 * 3 2 1 5 5 C 1.37099 * 119.99893 * 264.14034 * 4 3 2 6 6 H 1.08005 * 119.99671 * 197.43425 * 5 4 3 7 7 C 1.38952 * 120.00095 * 17.43591 * 5 4 3 8 8 N 1.31405 * 120.00049 * 21.52237 * 7 5 4 9 9 Si 1.86796 * 120.00072 * 201.52145 * 7 5 4 10 10 H 1.48496 * 109.47229 * 89.99786 * 9 7 5 11 11 H 1.48501 * 109.47596 * 209.99931 * 9 7 5 12 12 H 1.48504 * 109.47256 * 330.00294 * 9 7 5 13 13 C 1.34778 * 120.00298 * 84.14041 * 4 3 2 14 14 O 1.21285 * 120.00126 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99623 * 359.97438 * 13 4 3 16 16 C 1.52997 * 109.47033 * 179.97438 * 15 13 4 17 17 C 1.50699 * 109.47411 * 180.02562 * 16 15 13 18 18 C 1.38272 * 119.94560 * 89.99942 * 17 16 15 19 19 C 1.38139 * 120.05423 * 180.02562 * 18 17 16 20 20 C 1.38729 * 119.94867 * 0.02562 * 19 18 17 21 21 O 1.35906 * 120.05719 * 180.02562 * 20 19 18 22 22 C 1.42895 * 116.99758 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47511 * 299.99914 * 22 21 20 24 24 F 1.39896 * 109.47342 * 60.00163 * 22 21 20 25 25 C 1.38730 * 119.88795 * 0.27263 * 20 19 18 26 26 C 1.38151 * 119.94076 * 359.43106 * 25 20 19 27 27 H 4.40636 * 5.51478 * 179.97438 * 4 1 2 28 28 H 1.09005 * 109.46957 * 161.93141 * 3 2 1 29 29 H 1.09000 * 109.47203 * 41.93780 * 3 2 1 30 30 H 0.97002 * 120.00177 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.47070 * 60.00149 * 15 13 4 32 32 H 1.08994 * 109.47256 * 300.00113 * 15 13 4 33 33 H 1.09001 * 109.47163 * 60.00577 * 16 15 13 34 34 H 1.08994 * 109.47369 * 300.00261 * 16 15 13 35 35 H 1.07997 * 119.96688 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.02613 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47143 * 180.02562 * 22 21 20 38 38 H 1.08004 * 120.02964 * 179.72345 * 25 20 19 39 39 H 1.07998 * 119.96754 * 180.27000 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2847 1.3513 5 6 3.4768 0.7458 2.1882 6 1 4.0895 0.5551 3.0570 7 6 3.0356 2.0356 1.9188 8 7 1.9842 2.2239 1.1534 9 14 3.9370 3.5018 2.6446 10 1 5.0051 3.9386 1.7099 11 1 2.9790 4.6164 2.8571 12 1 4.5438 3.1162 3.9440 13 6 3.2474 -1.5602 1.7718 14 8 3.6514 -1.7964 2.8907 15 6 2.8705 -2.6929 0.8520 16 6 3.0914 -4.0266 1.5683 17 6 2.7151 -5.1594 0.6484 18 6 3.6664 -5.7147 -0.1875 19 6 3.3238 -6.7528 -1.0320 20 6 2.0241 -7.2377 -1.0416 21 8 1.6848 -8.2593 -1.8713 22 6 0.3287 -8.7077 -1.8272 23 9 0.0273 -9.1556 -0.5366 24 9 -0.5232 -7.6506 -2.1647 25 6 1.0700 -6.6747 -0.2065 26 6 1.4191 -5.6408 0.6407 27 1 -1.0499 0.0001 0.0002 28 1 3.0089 0.9779 -0.3188 29 1 3.0097 -0.7636 -0.6868 30 1 1.6759 3.1242 0.9656 31 1 3.4904 -2.6550 -0.0439 32 1 1.8213 -2.5998 0.5719 33 1 2.4718 -4.0647 2.4643 34 1 4.1407 -4.1194 1.8480 35 1 4.6777 -5.3360 -0.1805 36 1 4.0671 -7.1860 -1.6850 37 1 0.1929 -9.5246 -2.5359 38 1 0.0564 -7.0475 -0.2153 39 1 0.6777 -5.2051 1.2941 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281033826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:02 Heat of formation + Delta-G solvation = -92.512896 kcal Electronic energy + Delta-G solvation = -26289.757963 eV Core-core repulsion = 22028.305348 eV Total energy + Delta-G solvation = -4261.452615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.63897 -47.63087 -40.14948 -38.75644 -37.75759 -35.23348 -33.24118 -32.04550 -31.19137 -31.09615 -29.20945 -26.68100 -26.27866 -24.97073 -23.36419 -22.99398 -21.11514 -19.21067 -18.83181 -18.39464 -18.19822 -17.84638 -16.64839 -16.34418 -16.25187 -15.33146 -15.16628 -14.85672 -14.51814 -14.46883 -14.23225 -14.11990 -13.97617 -13.94372 -13.61008 -13.28773 -12.97847 -12.90637 -12.61547 -12.27394 -12.05337 -11.91811 -11.63305 -11.26741 -11.07920 -11.04095 -10.97421 -10.53718 -10.44862 -10.28189 -9.34592 -9.26072 -9.06582 -8.88474 -8.49821 -8.20690 -7.85316 -6.32073 -3.84437 1.24910 1.29364 2.30692 3.15799 3.17429 3.26280 3.30791 3.62251 3.70892 3.94181 3.97830 4.06682 4.19641 4.32926 4.70423 4.76679 4.81816 5.04727 5.13569 5.20731 5.34583 5.44742 5.49325 5.64797 5.66117 5.86258 5.92869 6.08762 6.12147 6.29046 6.32174 6.39822 6.45386 6.61035 6.74438 6.77776 7.00153 7.04079 7.57685 8.06956 8.44016 8.82020 9.15268 9.37914 9.93242 10.68855 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002604 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.056972 B =10748.940654 C =11368.469798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.112 4.112 3 C 0.232 3.768 4 N -0.442 5.442 5 C -0.316 4.316 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.451 3.549 14 O -0.585 6.585 15 C -0.125 4.125 16 C -0.060 4.060 17 C -0.091 4.091 18 C -0.084 4.084 19 C -0.132 4.132 20 C 0.089 3.911 21 O -0.323 6.323 22 C 0.411 3.589 23 F -0.200 7.200 24 F -0.198 7.198 25 C -0.186 4.186 26 C -0.079 4.079 27 H 0.199 0.801 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.179 0.821 38 H 0.130 0.870 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 -18.745 -9.976 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.114 4.114 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.443 4.443 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.239 3.761 14 O -0.470 6.470 15 C -0.166 4.166 16 C -0.098 4.098 17 C -0.092 4.092 18 C -0.102 4.102 19 C -0.150 4.150 20 C 0.046 3.954 21 O -0.241 6.241 22 C 0.321 3.679 23 F -0.182 7.182 24 F -0.180 7.180 25 C -0.205 4.205 26 C -0.097 4.097 27 H 0.216 0.784 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.196 0.804 38 H 0.148 0.852 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.252 -18.747 -9.586 21.176 hybrid contribution -0.489 1.046 0.332 1.202 sum -2.740 -17.700 -9.255 20.161 Atomic orbital electron populations 1.24268 0.95377 1.05927 1.02507 1.23188 0.94369 0.95826 0.97998 1.18253 0.84258 1.01893 0.84755 1.43723 1.56000 1.04783 1.11520 1.19676 1.30206 0.85347 1.09072 0.87825 1.25280 0.95165 0.99134 0.97755 1.70091 1.19681 1.22474 1.37816 0.86016 0.79165 0.80550 0.79541 1.20363 1.21161 1.19433 1.20088 0.84150 0.83725 0.88094 1.90514 1.51223 1.83803 1.21425 1.21551 1.02689 0.93430 0.98913 1.20298 1.03118 0.89992 0.96407 1.20134 0.93405 0.97713 0.97909 1.20953 0.99843 0.94869 0.94560 1.20386 0.93451 0.99037 1.02173 1.18822 0.94832 0.89357 0.92368 1.86581 1.27432 1.49934 1.60189 1.23312 0.75866 0.86314 0.82401 1.93100 1.92885 1.89203 1.42984 1.93108 1.71786 1.61027 1.92109 1.21483 0.99226 1.00362 0.99408 1.20942 0.96169 0.95018 0.97589 0.78435 0.87313 0.91993 0.92180 0.90466 0.90128 0.90364 0.90281 0.84808 0.85060 0.80444 0.85205 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.46 19.25 29.55 0.57 -4.89 16 2 C -0.11 -2.51 10.87 -37.12 -0.40 -2.92 16 3 C 0.23 5.10 4.91 -6.84 -0.03 5.06 16 4 N -0.44 -11.06 2.60 -117.94 -0.31 -11.37 16 5 C -0.32 -8.65 9.33 -14.93 -0.14 -8.79 16 6 H 0.10 3.00 7.39 -52.48 -0.39 2.61 16 7 C 0.03 0.80 4.87 -17.47 -0.08 0.72 16 8 N -0.86 -22.63 9.48 55.50 0.53 -22.10 16 9 Si 0.92 20.45 29.60 -169.99 -5.03 15.42 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 13 C 0.45 10.72 7.56 -10.98 -0.08 10.64 16 14 O -0.59 -15.84 15.63 5.55 0.09 -15.75 16 15 C -0.13 -2.27 4.29 -27.89 -0.12 -2.39 16 16 C -0.06 -0.97 4.63 -27.89 -0.13 -1.10 16 17 C -0.09 -1.26 5.14 -104.60 -0.54 -1.80 16 18 C -0.08 -1.03 9.69 -39.61 -0.38 -1.41 16 19 C -0.13 -1.53 9.99 -39.44 -0.39 -1.92 16 20 C 0.09 1.09 6.48 -39.22 -0.25 0.83 16 21 O -0.32 -3.32 10.43 -19.45 -0.20 -3.52 16 22 C 0.41 3.10 5.97 101.05 0.60 3.70 16 23 F -0.20 -1.86 15.60 2.25 0.04 -1.83 16 24 F -0.20 -1.91 15.56 2.25 0.04 -1.87 16 25 C -0.19 -2.38 8.26 -39.43 -0.33 -2.70 16 26 C -0.08 -1.06 9.69 -39.60 -0.38 -1.45 16 27 H 0.20 3.37 7.80 -54.09 -0.42 2.95 16 28 H 0.11 2.52 6.44 -51.93 -0.33 2.19 16 29 H 0.06 1.13 6.69 -51.93 -0.35 0.79 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.08 1.24 7.42 -51.92 -0.39 0.85 16 32 H 0.08 1.46 7.50 -51.93 -0.39 1.07 16 33 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 34 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.18 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.13 1.55 5.10 -52.48 -0.27 1.29 16 39 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -32.63 346.20 -5.94 -38.56 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.19 Total: 5.67 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.10 Total: -8.42 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.22 Total: -33.47 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.12 Total: -19.27 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.07 Total: -3.70 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.63 -5.94 -38.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281033826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.952 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds