Wall clock time and date at job start Tue Mar 31 2020 14:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47399 * 281.93194 * 3 2 1 5 5 C 1.37099 * 119.99893 * 264.14034 * 4 3 2 6 6 H 1.08005 * 119.99671 * 197.43425 * 5 4 3 7 7 C 1.38952 * 120.00095 * 17.43591 * 5 4 3 8 8 N 1.31405 * 120.00049 * 21.52237 * 7 5 4 9 9 Si 1.86796 * 120.00072 * 201.52145 * 7 5 4 10 10 H 1.48496 * 109.47229 * 89.99786 * 9 7 5 11 11 H 1.48501 * 109.47596 * 209.99931 * 9 7 5 12 12 H 1.48504 * 109.47256 * 330.00294 * 9 7 5 13 13 C 1.34778 * 120.00298 * 84.14041 * 4 3 2 14 14 O 1.21285 * 120.00126 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99623 * 359.97438 * 13 4 3 16 16 C 1.52997 * 109.47033 * 179.97438 * 15 13 4 17 17 C 1.50699 * 109.47411 * 180.02562 * 16 15 13 18 18 C 1.38272 * 119.94560 * 89.99942 * 17 16 15 19 19 C 1.38139 * 120.05423 * 180.02562 * 18 17 16 20 20 C 1.38729 * 119.94867 * 0.02562 * 19 18 17 21 21 O 1.35906 * 120.05719 * 180.02562 * 20 19 18 22 22 C 1.42895 * 116.99758 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47511 * 299.99914 * 22 21 20 24 24 F 1.39896 * 109.47342 * 60.00163 * 22 21 20 25 25 C 1.38730 * 119.88795 * 0.27263 * 20 19 18 26 26 C 1.38151 * 119.94076 * 359.43106 * 25 20 19 27 27 H 4.40636 * 5.51478 * 179.97438 * 4 1 2 28 28 H 1.09005 * 109.46957 * 161.93141 * 3 2 1 29 29 H 1.09000 * 109.47203 * 41.93780 * 3 2 1 30 30 H 0.97002 * 120.00177 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.47070 * 60.00149 * 15 13 4 32 32 H 1.08994 * 109.47256 * 300.00113 * 15 13 4 33 33 H 1.09001 * 109.47163 * 60.00577 * 16 15 13 34 34 H 1.08994 * 109.47369 * 300.00261 * 16 15 13 35 35 H 1.07997 * 119.96688 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.02613 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47143 * 180.02562 * 22 21 20 38 38 H 1.08004 * 120.02964 * 179.72345 * 25 20 19 39 39 H 1.07998 * 119.96754 * 180.27000 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2847 1.3513 5 6 3.4768 0.7458 2.1882 6 1 4.0895 0.5551 3.0570 7 6 3.0356 2.0356 1.9188 8 7 1.9842 2.2239 1.1534 9 14 3.9370 3.5018 2.6446 10 1 5.0051 3.9386 1.7099 11 1 2.9790 4.6164 2.8571 12 1 4.5438 3.1162 3.9440 13 6 3.2474 -1.5602 1.7718 14 8 3.6514 -1.7964 2.8907 15 6 2.8705 -2.6929 0.8520 16 6 3.0914 -4.0266 1.5683 17 6 2.7151 -5.1594 0.6484 18 6 3.6664 -5.7147 -0.1875 19 6 3.3238 -6.7528 -1.0320 20 6 2.0241 -7.2377 -1.0416 21 8 1.6848 -8.2593 -1.8713 22 6 0.3287 -8.7077 -1.8272 23 9 0.0273 -9.1556 -0.5366 24 9 -0.5232 -7.6506 -2.1647 25 6 1.0700 -6.6747 -0.2065 26 6 1.4191 -5.6408 0.6407 27 1 -1.0499 0.0001 0.0002 28 1 3.0089 0.9779 -0.3188 29 1 3.0097 -0.7636 -0.6868 30 1 1.6759 3.1242 0.9656 31 1 3.4904 -2.6550 -0.0439 32 1 1.8213 -2.5998 0.5719 33 1 2.4718 -4.0647 2.4643 34 1 4.1407 -4.1194 1.8480 35 1 4.6777 -5.3360 -0.1805 36 1 4.0671 -7.1860 -1.6850 37 1 0.1929 -9.5246 -2.5359 38 1 0.0564 -7.0475 -0.2153 39 1 0.6777 -5.2051 1.2941 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281033826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:01 Heat of formation + Delta-G solvation = -110.748660 kcal Electronic energy + Delta-G solvation = -26290.548725 eV Core-core repulsion = 22028.305348 eV Total energy + Delta-G solvation = -4262.243377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.28806 -48.29352 -41.09050 -40.48343 -38.72797 -37.10746 -34.60549 -33.84830 -33.01040 -32.03980 -30.40960 -28.27715 -27.39549 -26.49006 -24.76696 -23.90793 -22.19920 -20.57738 -19.99210 -19.67014 -19.08021 -18.85640 -18.41193 -18.00727 -17.09552 -16.69644 -16.51177 -16.09057 -15.97164 -15.76820 -15.61511 -14.94159 -14.92243 -14.81105 -14.63837 -14.53610 -14.35658 -14.00676 -13.97047 -13.63871 -13.47431 -13.43925 -13.23427 -12.80436 -12.51225 -12.34906 -12.21712 -12.14623 -12.10054 -11.72933 -11.16855 -11.07857 -10.64029 -10.31310 -10.01274 -9.81652 -9.27208 -8.30696 -5.91072 0.27390 0.33880 1.37371 1.43184 1.54077 1.65560 1.91294 2.15729 2.33823 2.39203 2.59783 2.66301 3.06177 3.22706 3.53256 3.71890 3.81034 3.81344 3.86114 3.92332 4.13985 4.19023 4.36084 4.36403 4.44032 4.54584 4.63983 4.82585 4.92163 4.98886 5.07975 5.15379 5.25218 5.29848 5.42884 5.48804 5.57894 5.69098 6.08010 6.08285 6.46409 7.14336 7.17062 7.45097 8.01861 8.67780 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002604 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.056972 B =10748.940654 C =11368.469798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.152 4.152 3 C 0.234 3.766 4 N -0.454 5.454 5 C -0.353 4.353 6 H 0.074 0.926 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.983 3.017 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.440 3.560 14 O -0.629 6.629 15 C -0.110 4.110 16 C -0.049 4.049 17 C -0.105 4.105 18 C -0.081 4.081 19 C -0.133 4.133 20 C 0.087 3.913 21 O -0.326 6.326 22 C 0.404 3.596 23 F -0.212 7.212 24 F -0.212 7.212 25 C -0.196 4.196 26 C -0.089 4.089 27 H 0.231 0.769 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.271 0.729 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.237 0.763 38 H 0.134 0.866 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -19.679 -11.977 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.153 4.153 3 C 0.112 3.888 4 N -0.172 5.172 5 C -0.480 4.480 6 H 0.092 0.908 7 C -0.201 4.201 8 N -0.509 5.509 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.230 3.770 14 O -0.516 6.516 15 C -0.150 4.150 16 C -0.087 4.087 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.151 4.151 20 C 0.044 3.956 21 O -0.244 6.244 22 C 0.315 3.685 23 F -0.194 7.194 24 F -0.194 7.194 25 C -0.215 4.215 26 C -0.107 4.107 27 H 0.248 0.752 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.252 0.748 38 H 0.151 0.849 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.523 -19.684 -11.625 22.999 hybrid contribution -0.495 1.276 0.930 1.654 sum -3.017 -18.408 -10.695 21.503 Atomic orbital electron populations 1.25127 0.96372 1.04385 1.00840 1.23487 0.95048 0.97289 0.99514 1.18311 0.84495 1.02249 0.83774 1.43940 1.56051 1.04831 1.12421 1.19569 1.31651 0.87122 1.09690 0.90766 1.25951 0.95419 1.00748 0.97955 1.70181 1.19823 1.23094 1.37849 0.85094 0.78288 0.77317 0.78571 1.18887 1.20464 1.20357 1.21072 0.82860 0.84624 0.88403 1.90474 1.52958 1.84577 1.23612 1.21472 1.03029 0.91922 0.98567 1.20115 1.02489 0.90008 0.96118 1.19911 0.94109 0.97805 0.98688 1.21162 1.00255 0.94685 0.93807 1.20679 0.93819 0.98552 1.02052 1.19030 0.95022 0.89508 0.92058 1.86593 1.29170 1.49074 1.59518 1.24311 0.74374 0.86995 0.82864 1.93076 1.92861 1.89196 1.44253 1.93080 1.72125 1.62052 1.92131 1.21560 0.99761 1.00430 0.99708 1.21007 0.96211 0.95524 0.97997 0.75220 0.88978 0.88377 0.91879 0.87812 0.89878 0.92274 0.90679 0.83045 0.82584 0.74761 0.84873 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.97 19.25 74.32 1.43 -8.54 16 2 C -0.15 -6.70 10.87 31.12 0.34 -6.36 16 3 C 0.23 10.26 4.91 84.57 0.42 10.67 16 4 N -0.45 -23.22 2.60 -645.43 -1.68 -24.90 16 5 C -0.35 -19.95 9.33 84.04 0.78 -19.16 16 6 H 0.07 4.53 7.39 -2.91 -0.02 4.51 16 7 C 0.00 0.14 4.87 84.93 0.41 0.55 16 8 N -0.87 -45.63 9.48 21.66 0.21 -45.43 16 9 Si 0.98 42.21 29.60 68.60 2.03 44.25 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.44 21.42 7.56 87.66 0.66 22.09 16 14 O -0.63 -35.48 15.63 -3.05 -0.05 -35.53 16 15 C -0.11 -3.93 4.29 29.85 0.13 -3.81 16 16 C -0.05 -1.60 4.63 29.85 0.14 -1.46 16 17 C -0.10 -2.82 5.14 -19.85 -0.10 -2.92 16 18 C -0.08 -1.83 9.69 22.25 0.22 -1.61 16 19 C -0.13 -2.74 9.99 22.36 0.22 -2.52 16 20 C 0.09 1.96 6.48 22.51 0.15 2.10 16 21 O -0.33 -5.85 10.43 -92.50 -0.96 -6.81 16 22 C 0.40 5.03 5.97 113.37 0.68 5.71 16 23 F -0.21 -3.58 15.60 44.97 0.70 -2.88 16 24 F -0.21 -3.69 15.56 44.97 0.70 -2.99 16 25 C -0.20 -4.80 8.26 22.37 0.18 -4.62 16 26 C -0.09 -2.37 9.69 22.26 0.22 -2.15 16 27 H 0.23 7.23 7.80 -4.42 -0.03 7.19 16 28 H 0.09 4.30 6.44 -2.38 -0.02 4.28 16 29 H 0.10 3.46 6.69 -2.39 -0.02 3.44 16 30 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.10 3.14 7.42 -2.38 -0.02 3.12 16 32 H 0.08 2.96 7.50 -2.39 -0.02 2.94 16 33 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 34 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 35 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.24 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.13 3.09 5.10 -2.91 -0.01 3.07 16 39 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -72.47 346.20 7.90 -64.56 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.08 Total: 21.76 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 5.87 Total: -12.03 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.47 Total: -70.33 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.01 Total: -42.34 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 1.40 Total: -5.87 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.25 kcal Total: -72.47 7.90 -64.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281033826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.184 kcal (2) G-P(sol) polarization free energy of solvation -72.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds