Wall clock time and date at job start Tue Mar 31 2020 14:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47172 * 133.00359 * 3 2 1 5 5 C 1.37097 * 120.00206 * 264.96625 * 4 3 2 6 6 H 1.07998 * 120.00186 * 192.13861 * 5 4 3 7 7 C 1.38947 * 119.99986 * 12.14454 * 5 4 3 8 8 N 1.31410 * 120.00214 * 16.48303 * 7 5 4 9 9 Si 1.86796 * 120.00007 * 196.48990 * 7 5 4 10 10 H 1.48502 * 109.47438 * 84.98130 * 9 7 5 11 11 H 1.48497 * 109.47479 * 204.98080 * 9 7 5 12 12 H 1.48500 * 109.47165 * 324.97854 * 9 7 5 13 13 C 1.34785 * 119.99958 * 84.96321 * 4 3 2 14 14 O 1.21291 * 119.99626 * 0.02562 * 13 4 3 15 15 C 1.50696 * 120.00014 * 180.02562 * 13 4 3 16 16 C 1.53003 * 109.46759 * 180.02562 * 15 13 4 17 17 C 1.53001 * 109.46585 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.46950 * 179.97438 * 17 16 15 19 19 C 1.35998 * 117.00443 * 180.02562 * 18 17 16 20 20 C 1.38637 * 120.03540 * 359.72797 * 19 18 17 21 21 C 1.38189 * 119.99426 * 179.72246 * 20 19 18 22 22 C 1.38447 * 120.07128 * 0.55311 * 21 20 19 23 23 F 1.35099 * 119.96829 * 179.74856 * 22 21 20 24 24 C 1.38447 * 120.07445 * 359.71985 * 22 21 20 25 25 C 1.38333 * 120.00202 * 0.02562 * 24 22 21 26 26 F 1.35102 * 120.03320 * 179.97438 * 25 24 22 27 27 H 4.40647 * 5.51394 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.47266 * 13.00033 * 3 2 1 29 29 H 1.08995 * 109.46772 * 253.00571 * 3 2 1 30 30 H 0.97001 * 120.00027 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47350 * 59.99861 * 15 13 4 32 32 H 1.08998 * 109.46925 * 299.99992 * 15 13 4 33 33 H 1.09000 * 109.47189 * 60.00006 * 16 15 13 34 34 H 1.08998 * 109.47165 * 299.99563 * 16 15 13 35 35 H 1.09001 * 109.47791 * 299.99870 * 17 16 15 36 36 H 1.09000 * 109.47065 * 60.00281 * 17 16 15 37 37 H 1.07997 * 120.00460 * 359.97361 * 20 19 18 38 38 H 1.08004 * 119.96714 * 180.25115 * 21 20 19 39 39 H 1.07993 * 120.00007 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9429 -1.0101 5 6 3.4608 0.4953 -2.2640 6 1 4.0001 1.1386 -2.9435 7 6 3.0983 -0.7861 -2.6607 8 7 2.1823 -1.4473 -1.9894 9 14 3.9132 -1.5690 -4.1481 10 1 5.1868 -2.2108 -3.7342 11 1 3.0076 -2.5938 -4.7265 12 1 4.1931 -0.5247 -5.1660 13 6 3.2614 2.2499 -0.7066 14 8 2.9725 2.6459 0.4028 15 6 3.7627 3.2193 -1.7458 16 6 3.8134 4.6268 -1.1479 17 6 4.3230 5.6108 -2.2029 18 8 4.3698 6.9255 -1.6447 19 6 4.8035 7.9262 -2.4571 20 6 5.1812 7.6466 -3.7615 21 6 5.6164 8.6650 -4.5880 22 6 5.6867 9.9630 -4.1116 23 9 6.1172 10.9562 -4.9199 24 6 5.3156 10.2446 -2.8078 25 6 4.8745 9.2283 -1.9794 26 9 4.5128 9.5023 -0.7068 27 1 -1.0502 -0.0003 0.0001 28 1 3.0098 -1.0005 -0.2312 29 1 3.0091 0.3012 0.9828 30 1 1.9294 -2.3419 -2.2661 31 1 3.0902 3.2125 -2.6036 32 1 4.7622 2.9245 -2.0655 33 1 4.4862 4.6333 -0.2904 34 1 2.8140 4.9218 -0.8280 35 1 5.3224 5.3157 -2.5225 36 1 3.6505 5.6044 -3.0607 37 1 5.1315 6.6337 -4.1328 38 1 5.9066 8.4474 -5.6053 39 1 5.3705 11.2575 -2.4375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281570082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:10 Heat of formation + Delta-G solvation = -88.825302 kcal Electronic energy + Delta-G solvation = -25643.861360 eV Core-core repulsion = 21382.568651 eV Total energy + Delta-G solvation = -4261.292709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97379 -49.93425 -41.10626 -40.52579 -38.43196 -37.11462 -34.76143 -33.74063 -33.19775 -31.98293 -30.62224 -29.08417 -27.61607 -26.25937 -24.49130 -23.58312 -22.48473 -20.98847 -19.74419 -19.36225 -18.87946 -18.43091 -18.19141 -17.82400 -17.59409 -16.85285 -16.77103 -16.34768 -16.22174 -16.14664 -16.01892 -15.76276 -15.44413 -15.12494 -14.97276 -14.42398 -13.92325 -13.88536 -13.77574 -13.43340 -13.26486 -12.98189 -12.92755 -12.72558 -12.63721 -12.34909 -12.13655 -12.08078 -11.93462 -11.53237 -11.26332 -11.23839 -10.61234 -10.32744 -10.17799 -9.86137 -9.20546 -8.22733 -5.87628 -0.12030 -0.03743 1.46588 1.53779 1.63477 1.83654 1.97488 2.14640 2.29385 2.34717 2.39807 2.85514 3.13695 3.22020 3.30591 3.54873 3.78207 3.90968 3.96156 3.97551 4.04586 4.15999 4.29953 4.47610 4.52082 4.56630 4.72953 4.74201 4.82585 4.92093 4.97944 4.98327 5.09902 5.15972 5.30154 5.39717 5.48723 5.55674 5.78499 6.22361 6.41631 7.08452 7.13549 7.56495 7.97749 8.75415 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.002452 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.070500 B =11416.463091 C =12747.570059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.145 4.145 3 C 0.234 3.766 4 N -0.451 5.451 5 C -0.356 4.356 6 H 0.125 0.875 7 C -0.009 4.009 8 N -0.888 5.888 9 Si 0.994 3.006 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.253 1.253 13 C 0.441 3.559 14 O -0.640 6.640 15 C -0.103 4.103 16 C -0.092 4.092 17 C 0.063 3.937 18 O -0.328 6.328 19 C 0.080 3.920 20 C -0.149 4.149 21 C -0.107 4.107 22 C 0.079 3.921 23 F -0.136 7.136 24 C -0.149 4.149 25 C 0.069 3.931 26 F -0.140 7.140 27 H 0.236 0.764 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.268 0.732 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 15.555 -9.185 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.146 4.146 3 C 0.111 3.889 4 N -0.168 5.168 5 C -0.482 4.482 6 H 0.143 0.857 7 C -0.211 4.211 8 N -0.526 5.526 9 Si 0.818 3.182 10 H -0.200 1.200 11 H -0.220 1.220 12 H -0.176 1.176 13 C 0.231 3.769 14 O -0.529 6.529 15 C -0.142 4.142 16 C -0.131 4.131 17 C -0.011 4.011 18 O -0.242 6.242 19 C 0.034 3.966 20 C -0.168 4.168 21 C -0.126 4.126 22 C 0.060 3.940 23 F -0.115 7.115 24 C -0.168 4.168 25 C 0.049 3.951 26 F -0.119 7.119 27 H 0.252 0.748 28 H 0.131 0.869 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.193 0.807 38 H 0.193 0.807 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.358 15.576 -8.452 19.188 hybrid contribution -0.294 -0.624 -0.153 0.707 sum 7.065 14.951 -8.604 18.641 Atomic orbital electron populations 1.25183 0.96440 1.03217 1.03442 1.23697 0.95329 0.97971 0.97616 1.18240 0.84437 0.95905 0.90324 1.44027 1.55510 1.05425 1.11874 1.20205 1.36237 1.00451 0.91335 0.85711 1.26179 0.95469 0.97586 1.01904 1.70229 1.27344 1.13342 1.41714 0.84919 0.77508 0.78125 0.77672 1.19970 1.21953 1.17649 1.21030 0.82964 0.83172 0.89686 1.90528 1.58110 1.78409 1.25881 1.21192 1.03995 0.91661 0.97400 1.21081 1.01824 0.92197 0.97969 1.23043 1.03233 0.78013 0.96835 1.86141 1.80759 1.17244 1.40089 1.19328 0.98128 0.87502 0.91678 1.21358 1.02050 1.02489 0.90883 1.21351 0.99098 0.89696 1.02453 1.17275 1.02592 0.85944 0.88235 1.91521 1.87517 1.60358 1.72082 1.21002 1.02328 1.00583 0.92888 1.16879 1.06274 0.91291 0.80660 1.91498 1.89789 1.94278 1.36345 0.74752 0.86915 0.92657 0.92149 0.88283 0.87299 0.92111 0.92828 0.88811 0.89318 0.80729 0.80749 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.90 19.25 74.32 1.43 -10.47 16 2 C -0.14 -7.28 11.86 31.13 0.37 -6.91 16 3 C 0.23 11.69 5.08 84.58 0.43 12.12 16 4 N -0.45 -22.01 2.60 -645.43 -1.68 -23.69 16 5 C -0.36 -16.42 9.27 84.04 0.78 -15.64 16 6 H 0.13 5.03 6.45 -2.91 -0.02 5.01 16 7 C -0.01 -0.44 5.07 84.93 0.43 0.00 16 8 N -0.89 -44.51 9.04 21.66 0.20 -44.32 16 9 Si 0.99 36.27 29.58 68.60 2.03 38.30 16 10 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 11 H -0.29 -11.08 7.11 99.48 0.71 -10.37 16 12 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 13 C 0.44 20.42 7.58 87.65 0.66 21.09 16 14 O -0.64 -33.89 15.65 -3.06 -0.05 -33.94 16 15 C -0.10 -3.43 4.11 29.85 0.12 -3.31 16 16 C -0.09 -2.85 4.87 30.60 0.15 -2.70 16 17 C 0.06 1.37 4.74 71.98 0.34 1.71 16 18 O -0.33 -8.71 10.00 -93.53 -0.94 -9.65 16 19 C 0.08 1.77 6.69 22.52 0.15 1.92 16 20 C -0.15 -2.25 9.04 22.35 0.20 -2.05 16 21 C -0.11 -1.39 10.02 22.31 0.22 -1.17 16 22 C 0.08 1.26 7.30 22.37 0.16 1.43 16 23 F -0.14 -2.27 17.27 44.97 0.78 -1.49 16 24 C -0.15 -2.61 10.00 22.34 0.22 -2.39 16 25 C 0.07 1.56 7.31 22.45 0.16 1.73 16 26 F -0.14 -3.79 17.11 44.97 0.77 -3.02 16 27 H 0.24 8.19 7.80 -4.41 -0.03 8.16 16 28 H 0.11 5.75 5.91 -2.39 -0.01 5.73 16 29 H 0.06 2.74 7.58 -2.39 -0.02 2.72 16 30 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 31 H 0.10 3.06 8.06 -2.39 -0.02 3.04 16 32 H 0.11 3.08 7.74 -2.39 -0.02 3.06 16 33 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 34 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.09 1.55 7.65 -2.39 -0.02 1.53 16 36 H 0.09 1.55 7.67 -2.39 -0.02 1.53 16 37 H 0.18 1.76 6.30 -2.91 -0.02 1.74 16 38 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -65.70 350.54 8.04 -57.66 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 1.09 Total: 24.79 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.84 Total: -4.64 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.48 Total: -68.01 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.98 Total: -43.58 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 1.55 Total: -4.51 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -65.70 8.04 -57.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281570082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.166 kcal (2) G-P(sol) polarization free energy of solvation -65.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds