Wall clock time and date at job start Tue Mar 31 2020 14:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37877 * 120.00434 * 294.30421 * 5 3 2 8 8 N 1.31514 * 120.00339 * 153.95015 * 7 5 3 9 9 Si 1.86805 * 120.00054 * 333.96047 * 7 5 3 10 10 H 1.48494 * 109.47190 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46651 * 299.99492 * 9 7 5 12 12 H 1.48501 * 109.47075 * 59.99169 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21366 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.49306 * 120.00195 * 179.97438 * 14 13 3 17 17 O 1.21390 * 119.99840 * 0.02562 * 16 14 13 18 18 N 1.34781 * 120.00195 * 179.97438 * 16 14 13 19 19 C 1.38750 * 120.00085 * 179.97438 * 18 16 14 20 20 N 1.29679 * 124.94322 * 179.71711 * 19 18 16 21 21 C 1.31908 * 116.92257 * 179.84215 * 20 19 18 22 22 C 1.50707 * 122.71393 * 180.22085 * 21 20 19 23 23 C 1.52996 * 117.49980 * 163.87551 * 22 21 20 24 24 C 1.52993 * 117.50204 * 95.24888 * 22 21 20 25 25 C 1.33524 * 114.56945 * 0.44921 * 21 20 19 26 26 S 1.70973 * 124.94227 * 0.02705 * 19 18 16 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.97007 * 119.99410 * 354.97021 * 8 7 5 33 33 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 34 34 H 0.96993 * 119.99572 * 0.02562 * 18 16 14 35 35 H 1.09010 * 115.54515 * 309.57646 * 22 21 20 36 36 H 1.09003 * 117.49672 * 359.97438 * 23 22 21 37 37 H 1.08999 * 117.50039 * 145.01824 * 23 22 21 38 38 H 1.09001 * 117.50376 * 214.98228 * 24 22 21 39 39 H 1.08997 * 117.49800 * 359.97327 * 24 22 21 40 40 H 1.07998 * 125.97058 * 179.73083 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3347 2.6307 -0.4665 16 6 0.0716 3.3213 -2.6738 17 8 0.8579 3.3496 -3.5982 18 7 -1.1445 3.8871 -2.8059 19 6 -1.4971 4.5034 -3.9980 20 7 -2.6394 5.0715 -4.2309 21 6 -2.8051 5.6133 -5.4222 22 6 -4.0774 6.3105 -5.8300 23 6 -4.0241 7.2126 -7.0646 24 6 -4.1324 7.8310 -5.6693 25 6 -1.7561 5.4897 -6.2391 26 16 -0.4917 4.6178 -5.3761 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8117 0.4042 0.4383 33 1 2.2954 2.1150 -1.9977 34 1 -1.7728 3.8642 -2.0674 35 1 -4.9968 5.7521 -5.6535 36 1 -3.0687 7.3021 -7.5816 37 1 -4.9085 7.2478 -7.7007 38 1 -5.0880 8.2731 -5.3875 39 1 -3.2486 8.3270 -5.2682 40 1 -1.6940 5.8591 -7.2520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287709153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:05 Heat of formation + Delta-G solvation = 6.036141 kcal Electronic energy + Delta-G solvation = -24251.197550 eV Core-core repulsion = 20580.151480 eV Total energy + Delta-G solvation = -3671.046070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07342 -40.11963 -38.73050 -37.11491 -35.79720 -34.83557 -32.60546 -31.59927 -29.77409 -27.68221 -26.24178 -24.84085 -22.71265 -22.61188 -22.23738 -21.40425 -19.94502 -19.68589 -18.50264 -18.32067 -17.29854 -16.98414 -16.36423 -16.19242 -15.91778 -15.45643 -15.03674 -14.77913 -14.14951 -13.83332 -13.51684 -13.42515 -12.92035 -12.78657 -12.60933 -12.46374 -12.02988 -11.89316 -11.86575 -11.55591 -11.09969 -10.96458 -10.84624 -10.80717 -10.58438 -10.55059 -9.98881 -9.92871 -9.91076 -9.51330 -9.35664 -9.32595 -8.48651 -8.41473 -8.36446 -6.72303 -4.32376 0.44362 0.94875 1.41444 1.66624 2.07609 2.55869 3.29553 3.32990 3.38959 3.44053 3.53719 3.69564 4.11132 4.35078 4.54499 4.63297 4.71227 4.88616 4.97209 4.98480 5.22559 5.29578 5.48979 5.53863 5.75014 5.81106 5.91019 5.93587 5.94740 6.09510 6.41856 6.50017 6.64222 6.68757 6.82628 7.00281 7.19341 7.31152 7.44884 7.58484 8.05361 8.16155 8.32658 8.67905 9.32855 10.66353 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.002590 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.448245 B =10807.377455 C =11126.822597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.249 3.751 4 H 0.047 0.953 5 C -0.634 4.634 6 H 0.067 0.933 7 C 0.051 3.949 8 N -0.880 5.880 9 Si 1.028 2.972 10 H -0.281 1.281 11 H -0.279 1.279 12 H -0.272 1.272 13 N -0.655 5.655 14 C 0.503 3.497 15 O -0.522 6.522 16 C 0.507 3.493 17 O -0.486 6.486 18 N -0.600 5.600 19 C 0.245 3.755 20 N -0.505 5.505 21 C 0.123 3.877 22 C -0.083 4.083 23 C -0.170 4.170 24 C -0.164 4.164 25 C -0.319 4.319 26 S 0.248 5.752 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.273 0.727 33 H 0.407 0.593 34 H 0.436 0.564 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.911 9.653 -14.815 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.147 3.853 4 H 0.065 0.935 5 C -0.671 4.671 6 H 0.085 0.915 7 C -0.158 4.158 8 N -0.511 5.511 9 Si 0.855 3.145 10 H -0.207 1.207 11 H -0.205 1.205 12 H -0.198 1.198 13 N -0.304 5.304 14 C 0.281 3.719 15 O -0.400 6.400 16 C 0.288 3.712 17 O -0.358 6.358 18 N -0.251 5.251 19 C -0.122 4.122 20 N -0.228 5.228 21 C -0.010 4.010 22 C -0.103 4.103 23 C -0.207 4.207 24 C -0.202 4.202 25 C -0.459 4.459 26 S 0.499 5.501 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.243 0.757 34 H 0.277 0.723 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.992 8.901 -12.870 21.670 hybrid contribution -1.001 0.737 -1.871 2.246 sum -15.992 9.638 -14.741 23.789 Atomic orbital electron populations 1.21921 0.97348 0.99402 1.01733 1.22271 0.93705 0.99206 1.02065 1.19298 0.96509 0.88751 0.80778 0.93513 1.21937 0.89131 1.50798 1.05278 0.91540 1.25619 0.96614 0.91548 1.02015 1.70868 1.13738 1.35711 1.30748 0.84243 0.76104 0.77726 0.76456 1.20665 1.20529 1.19814 1.46249 1.12898 1.52188 1.19065 1.19205 0.84768 0.81641 0.86304 1.90781 1.50341 1.59151 1.39711 1.21281 0.80624 0.78825 0.90475 1.90689 1.48945 1.55771 1.40434 1.42512 1.17272 1.52069 1.13288 1.23350 0.94746 1.00144 0.93931 1.65994 1.19479 1.15538 1.21769 1.18835 0.95573 0.99021 0.87531 1.20326 0.94846 0.92286 1.02880 1.23042 1.03693 1.03096 0.90910 1.22986 1.03652 0.94099 0.99451 1.27227 0.99369 1.12699 1.06595 1.85002 1.13761 1.49702 1.01608 0.92710 0.93722 0.94583 0.92701 0.91210 0.91644 0.75713 0.72330 0.86217 0.88409 0.88022 0.88168 0.88632 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.53 37.16 0.32 -2.41 16 2 C -0.13 -2.80 5.37 -26.73 -0.14 -2.94 16 3 C 0.25 5.57 1.84 -69.09 -0.13 5.44 16 4 H 0.05 1.11 6.12 -51.93 -0.32 0.80 16 5 C -0.63 -16.31 8.92 -34.44 -0.31 -16.61 16 6 H 0.07 1.81 7.96 -52.48 -0.42 1.39 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.88 -25.06 13.70 55.43 0.76 -24.30 16 9 Si 1.03 23.69 26.56 -169.99 -4.51 19.17 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.87 6.34 56.52 0.36 -5.51 16 13 N -0.66 -12.65 5.02 -55.41 -0.28 -12.93 16 14 C 0.50 8.91 6.49 -11.65 -0.08 8.84 16 15 O -0.52 -9.94 13.62 5.48 0.07 -9.87 16 16 C 0.51 7.83 7.85 -11.65 -0.09 7.74 16 17 O -0.49 -7.83 13.93 5.46 0.08 -7.76 16 18 N -0.60 -8.30 5.39 -13.55 -0.07 -8.38 16 19 C 0.25 3.39 8.18 -87.55 -0.72 2.67 16 20 N -0.50 -6.93 10.58 -11.32 -0.12 -7.05 16 21 C 0.12 1.43 6.41 -84.21 -0.54 0.90 16 22 C -0.08 -0.74 6.30 -91.77 -0.58 -1.32 16 23 C -0.17 -1.10 9.91 -26.73 -0.26 -1.37 16 24 C -0.16 -1.24 10.23 -26.73 -0.27 -1.51 16 25 C -0.32 -3.32 10.50 29.08 0.31 -3.02 16 26 S 0.25 3.05 20.21 -107.50 -2.17 0.87 16 27 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 28 H 0.04 0.81 5.63 -51.93 -0.29 0.52 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.53 5.77 -51.93 -0.30 1.23 16 32 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 33 H 0.41 7.47 7.99 -40.82 -0.33 7.14 16 34 H 0.44 5.56 8.29 -40.82 -0.34 5.22 16 35 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 36 H 0.10 0.58 6.79 -51.93 -0.35 0.23 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.18 1.34 6.95 -52.49 -0.36 0.97 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -28.75 346.20 -8.47 -37.22 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.85 Total: 10.10 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.59 Total: -2.32 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.29 Total: -52.64 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.15 Total: -17.62 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.51 Total: 19.17 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.17 Total: 0.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.75 -8.47 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287709153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.257 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds